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FIGURE 7. With n in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 7. With n = ca. 51 Kalanchoe crenata, a widely distributed African species, is a hexaploid. Photograph: Gideon F. Smith.
FIGURE 8 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 8. Kalanchoe tubiflora, one of the most invasive of the Malagasy kalanchoes, is a tetraploid with 2n = 68. Its leaves are tricussately arranged, rather than decussately. Photograph: Gideon F. Smith.
FIGURE 5 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 5. Prof. Flávio Resende (right) and Prof. Fernando Catarino (left) at an exhibition of the students of the Faculty of Sciences of the University of Lisbon, Portugal. Photographer unknown. Photograph supplied courtesy of Prof. Fernando Catarino and reproduced with his permission.
FIGURE 3 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 3. While based at Cornell University, Ithaca, U.S.A., Dr Charles H. ['Chas'] Uhl (28 May 1918, Schenectady, New York–29 August 2010, Jefferson, Georgia, U.S.A.) was a pioneering researcher on the cytology and cytogenetics of the family Crassulaceae, including on Kalanchoe. Photograph taken in the early-1990s at the then home of Uhl's daughter, Mary, in Edinburgh, Great Britain, by Ray Stephenson. Reproduced with permission and © of Ray Stephenson.
FIGURE 6 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 6. Kalanchoe pinnata, which is widely naturalised in mild-climate parts of the world, appears to be an aneuploid with three additional chromosomes. Photograph: Gideon F. Smith.
FIGURE 1 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 1. Cultivars and selections that contain genetic material of Kalanchoe blossfeldiana, such as K. 'Else-Flower' depicted here, remain exceedingly popular as horticultural material for, especially, the indoor plant market. Photograph: Gideon F. Smith.
FIGURE 4 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 4. In the 1980s, Dr Edith Maria Raadts (3 December 1914, Rees am Rhein, Germany–3 January 2004, Agnesheim in Rees, Germany) published extensively on the cytology of Kalanchoe, especially of the East African species, while she was based at the Botanischer Garten und Botanisches Museum (BGBM) Berlin. Photographer unknown. Reproduced with the permission of the Botanischer Garten und Botanisches Museum Berlin, Freie Universität Berlin, Germany.
FIGURE 2 in A review of the cytotaxonomy of Kalanchoe (Crassulaceae subfam. Kalanchooideae) with reference to evolutionary trends in the genus
FIGURE 2. Material of Kalanchoe with generally fairly narrow leaves and variously incised leaf margins is sold under various monikers such as K. 'Katapifa', K. 'Scorpion' and K. 'Tarantula'. Material illustrated here has double flowers and is the product of complex breeding programmes that likely included K. blossfeldiana. Photograph: Gideon F. Smith.
Normalized CT images and reference segmentations of thoracic and lumbar vertebrae from the CSI 2014 workshop
<p>This is the dataset of the vertebra segmentation challenge of the <a href="http://csi-workshop.weebly.com/challenges.html">CSI 2014 workshop</a> that was held in conjunction with MICCAI 2014.</p> <ul> <li><strong>1-10</strong>: Training set, scans of 10 young adult (16-35 years old)</li> <li><strong>11-15</strong>: Test set, scans of 5 young adult (20-35 years old)</li> <li><strong>16-20</strong>: Test set, scans of 5 patients with vertebral compression fractures </li> </ul> <p>Scans were acquired at the Department of Radiological Sciences, University of California, Irvine, School of Medicine and were published under the <a href="http://opendatacommons.org/licenses/pddl/1.0/">ODC Public Domain Dedication and License</a> on <a href="http://spineweb.digitalimaginggroup.ca/">SpineWeb</a> (datasets 2 and 15). The dataset and challenge is further described in this publication: <a href="http://dx.doi.org/10.1016/j.compmedimag.2015.12.006">A multi-center milestone study of clinical vertebral CT segmentation</a></p> <p>The data that is published here has been normalized:</p> <ul> <li>Voxel values are Hounsfield values and have been clipped to [-1000, 3095]</li> <li>Image origin has been set to 0,0,0</li> <li>Image orientation has been standardized to RAI orientation</li> <li>Small islands and other obvious mistakes have been removed</li> <li>Segmentation masks have been smoothed with a 2x2x2 median filter</li> <li>Vertebrae have been anatomically labeled (8 = T1, 9 = T2, ..., 24 = L5)</li> <li>Because not always all visible vertebrae were segmented in the original data, only segmentations of the thoracic and lumbar vertebrae have been retained</li> </ul> <p><strong>License</strong></p> <p>This dataset is released under the <a href="https://opendatacommons.org/licenses/by/1-0/">Open Data Commons Attribution License</a> (which the original license allows me to do). When using this dataset for publication of any kind, please reference the following paper to meet the attribution requirement:</p> <blockquote> <p>Yao J, Burns JE, Forsberg D, Seitel A, Rasoulian A, Abolmaesumi P, Hammernik K, Urschler M, Ibragimov B, Korez R, Vrtovec T, Castro-Mateos I, Pozo JM, Frangi AF, Summers RM, Li S. A multi-center milestone study of clinical vertebral CT segmentation. Comput Med Imaging Graph. 2016; 49:16-28. doi: 10.1016/j.compmedimag.2015.12.006.</p> </blockquote> <p>There is no need to reference this upload, referencing the original authors is sufficient.</p> <p><strong>Notes</strong></p> <p>The dataset contains 2 cases with only 4 lumbar vertebrae in which L5/S1 has not been segmented (i.e., label 25 is missing).</p> <p>The resolution and segmentation quality of the diseased cases (16-20) is quite low.</p>
FIGURE 1 in Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny
FIGURE 1. Maximum Likelihood phylogram of concatenated ITS and 28S sequences from type material of type species for dictyoceratid genera. Numbers at branches are bootstrap values> 50%. Taxon names in bold depict sequences yielded in the course of the target capturing approach as described here. Species names are followed by museum voucher number and type status. The tree is rooted with Candidaspongia flabellata Bergquist, Sorokin & Karuso, a dysideid Dictyoceratida. Scale bar represents substitutions / site.
Quantitative NMR interpretation without reference
<p>The publication describes the quantitative interpretation of the 1D Proton NMR experiment using only absolute signal intensities with the variation of common experimental parameters and their application. The data provided contains all NMR data (raw, processed and integrated) and the Apple Numbers v12.1 spreadsheet used for the interpretation and graph creation. </p>
Pre-computed MGCs from human microbiome reference genomes
<p>This dataset contains non-redundant metabolic gene clusters (MGCs) collected by running gutSMASH and BiG-MAP on a collection of unique high-quality reference genomes. This collection consist of MGCs predicted by gutSMASH using 1,520 genomes from the Culturable Genome Reference (CGR), 2,308 genomes from the Human Microbiome Project (HMP) and 414 Clostridia genomes as input and then filtered for redundancy using the family module of BiG-MAP. For more information: <a href="http://doi.org/10.1101/2021.02.25.432841">https://doi.org/10.1101/2021.02.25.432841</a></p> <p><strong>BiG-MAP_mg.pickle</strong> -> suitable for <strong>metagenome</strong> analyses</p> <p><strong>BiG-MAP_mt.pickle </strong>-> suitable for <strong>metatranscriptome </strong>analyses</p> <p>The files can be used as direct input in the third module of BiG-MAP (BiG-MAP.map.py: <a href="https://github.com/medema-group/BiG-MAP">https://github.com/medema-group/BiG-MAP</a>).</p>
Supplementary material 1 from: Lagos-Kutz D, Favret C, Giordano R, Voegtlin D (2014) Molecular and morphological differentiation between Aphis gossypii Glover (Hemiptera, Aphididae) and related species, with particular reference to the North American Midwest. ZooKeys 459: 49-72. https://doi.org/10.3897/zookeys.459.7850
Table S1. Collection information.: Explanation note: Collection information for specimens included in this study. INHS voucher and GenBank accession numbers are for specimens originating from a specific collection.
Supplementary material 2 from: Lagos-Kutz D, Favret C, Giordano R, Voegtlin D (2014) Molecular and morphological differentiation between Aphis gossypii Glover (Hemiptera, Aphididae) and related species, with particular reference to the North American Midwest. ZooKeys 459: 49-72. https://doi.org/10.3897/zookeys.459.7850
Table S2. Morphological characters useful to discriminate Aphid gossypii, Aphid monardae, Aphid oestlundi and Aphid sedi.: Explanation note: Morphological characters useful to discriminate Aphid gossypii, Aphid monardae, Aphid oestlundi and Aphid sedi. For all measurements and counts the range is given and the mean is in parentheses. All measurements in mm. Abbreviations: B base of last antennal segment, CA cauda, DBIII: Distance from the base of antennal segment III to the first secondary sensorium, HT2 second hind tarsus, LHIII longest Hair on ant. segm. III, PT: Processus terminalis, SIPH siphunculi, URS ultimate rostral segment. Data of oviparae of Aphid gossypii from Kim et al. (2010a).
Fig. 4 in The Jordan theropod (Maastrichtian, Montana, U.S.A.) referred to the genus Aublysodon.
Fig. 4 - Comparison of The skulls of A, Aubtysodon; B, Coelopbysis (AMNB 7224); C, Dromaeosaurus (modified from Coibert & Russell, 1969, Fig. 1); D, Velociraptor (modified from Barsbold, 1982, Fig. la); E, Sauromitboides (modified from Barsbold, 1974, Pl. 1), V, Dromiceiomimus (modified from Russell, 1972, Fig. 5, and ROM 840); G, Caegnatbus (modified from Sternberg, 1949, Fig. 1, and Barsbold, 1982, Fig. c); H, Albeltosaurus libratus (modified from Gilmore, 1946, Pl. 4, Fig. 3); I, Daspletosaurus torosus (modified from Russell, 1970, Fig. 6); J, " Albertosaurus " lancensis (modified from Gilmore, 1946, Pl. 1); H, Tyrannosaurus (modified from Osborn, 1912, Fig. 1); L, lingual (top) and labial (bottom) views of the dentaries of " Cbirostenotes " (modified from Gilmore, 1924, Fig. 3). Scale bar represents 10 cm. Comparaison des cranes des divers théropodes: A, Aubtysodon; B, Coelopbysis (AMNB 7224); C, Dromaeosaurus (modifiés d'après Colbert & Russell 1969, Fig. 1); D, Velociraptor (modifié d'après Barsbold 1982, Fig. la); E, Sauromitboides (modifié d'après Barsbold 1974, Pl. 1); F, Dromiceiomimus (modifié d'après Russell 1972, Fig. 5 et ROM 840); C, Caenagnatbus (modifié d'après Sternberg 1949, Fig. 1 et Barsbold 1982, Fig. c); H, Albertosaurus libratus (modifié d'après Gilmore 1946, PI. 4, Fig. 3); I, Daspletosaurus torosus (modifié d'après Russell 1970, Fig. 6); J, " Albertosaurud' lancensis (modifié d'après Gilmore 1946, Pl. 1); K, Tyrannosaurus (modifié d'après Osborn 1912, Fig. 1); L, les vues linguale (en haut) et labiale (en bas) des dentaires du " Cbirostenotes " (modifié d'après Gilmore 1924, Fig. 3). Echelle = 10 cm.
Fig. 2 in The Jordan theropod (Maastrichtian, Montana, U.S.A.) referred to the genus Aublysodon.
Fig. 2 - Cheek teeth of Aubtysodon mirandus. Left sixth maxillary tooth, as preserved, in lateral (A) and posterior (B) aspects. Right fourth dentary tooth, rendered in unworn condition, in anterior (C) and labial (D) aspects. Scale bar represents 10 mm. Les dents jugales de VAubtysodon mirandus. Sixième dent maxiliaire gauche telle qu'elle est conservée en vue laterale (A) et vue postérieure (B). Quatrième dent du dentaire droit, figurées sans usure en vue antérieure (C) et en vue labiale (D). Echelle: 10 mm.
Fig. 2 in The Jordan theropod (Maastrichtian, Montana, U.S.A.) referred to the genus Aublysodon.
Fig. 2 - Cheek teeth of Aubtysodon mirandus. Left sixth maxillary tooth, as preserved, in lateral (A) and posterior (B) aspects. Right fourth dentary tooth, rendered in unworn condition, in anterior (C) and labial (D) aspects. Scale bar represents 10 mm. Les dents jugales de VAubtysodon mirandus. Sixième dent maxiliaire gauche telle qu'elle est conservée en vue laterale (A) et vue postérieure (B). Quatrième dent du dentaire droit, figurées sans usure en vue antérieure (C) et en vue labiale (D). Echelle: 10 mm.
Fig. 4 in The Jordan theropod (Maastrichtian, Montana, U.S.A.) referred to the genus Aublysodon.
Fig. 4 - Comparison of The skulls of A, Aubtysodon; B, Coelopbysis (AMNB 7224); C, Dromaeosaurus (modified from Coibert & Russell, 1969, Fig. 1); D, Velociraptor (modified from Barsbold, 1982, Fig. la); E, Sauromitboides (modified from Barsbold, 1974, Pl. 1), V, Dromiceiomimus (modified from Russell, 1972, Fig. 5, and ROM 840); G, Caegnatbus (modified from Sternberg, 1949, Fig. 1, and Barsbold, 1982, Fig. c); H, Albeltosaurus libratus (modified from Gilmore, 1946, Pl. 4, Fig. 3); I, Daspletosaurus torosus (modified from Russell, 1970, Fig. 6); J, " Albertosaurus " lancensis (modified from Gilmore, 1946, Pl. 1); H, Tyrannosaurus (modified from Osborn, 1912, Fig. 1); L, lingual (top) and labial (bottom) views of the dentaries of " Cbirostenotes " (modified from Gilmore, 1924, Fig. 3). Scale bar represents 10 cm. Comparaison des cranes des divers théropodes: A, Aubtysodon; B, Coelopbysis (AMNB 7224); C, Dromaeosaurus (modifiés d'après Colbert & Russell 1969, Fig. 1); D, Velociraptor (modifié d'après Barsbold 1982, Fig. la); E, Sauromitboides (modifié d'après Barsbold 1974, Pl. 1); F, Dromiceiomimus (modifié d'après Russell 1972, Fig. 5 et ROM 840); C, Caenagnatbus (modifié d'après Sternberg 1949, Fig. 1 et Barsbold 1982, Fig. c); H, Albertosaurus libratus (modifié d'après Gilmore 1946, PI. 4, Fig. 3); I, Daspletosaurus torosus (modifié d'après Russell 1970, Fig. 6); J, " Albertosaurud' lancensis (modifié d'après Gilmore 1946, Pl. 1); K, Tyrannosaurus (modifié d'après Osborn 1912, Fig. 1); L, les vues linguale (en haut) et labiale (en bas) des dentaires du " Cbirostenotes " (modifié d'après Gilmore 1924, Fig. 3). Echelle = 10 cm.
Reference files for urchin-workflow3
<p><a href="https://github.com/kokitsuyuzaki/urchin-workflow3">urchin-workflow3</a> performs some analytical tools for Sea Urchin single-cell RNA-Seq datasets in our study.</p> <p>These reference files are supposed to be set in the directory <code>data/Shimoda</code> in urchin-workflow3 to annotate cell type label and create marker gene list.</p>
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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