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Figure 5 from: Sylvester SP, Peterson PM, Romaschenko K, Bravo-Pedraza WJ, Cuta-Alarcon LE, Soreng RJ (2020) New combinations and updated descriptions in Podagrostis (Agrostidinae, Poaceae) from the Neotropics and Mexico. PhytoKeys 148: 21-50. https://doi.org/10.3897/phytokeys.148.50042
Figure 5 Podagrostis trichodes. A Whole plant B spikelets, with the floret detached and raised above the glumes so that the rachilla prolongation (indicated with a red arrow) can be seen C section of inflorescence D leaf blade, showing abaxial surface. A, B images of specimen L.E. Cuta-Alarcon 362 (FMB) C, D images of specimen M.C. Gomez 1 (US3534984).
Figure 4 from: Sylvester SP, Peterson PM, Romaschenko K, Bravo-Pedraza WJ, Cuta-Alarcon LE, Soreng RJ (2020) New combinations and updated descriptions in Podagrostis (Agrostidinae, Poaceae) from the Neotropics and Mexico. PhytoKeys 148: 21-50. https://doi.org/10.3897/phytokeys.148.50042
Figure 4 Podagrostis rosei. A Whole plant B ligular area of upper culm leaf C section of inflorescence showing spikelets. D Floret, lateral view, with the rachilla prolongation indicated with a red arrow. A Digitized image of specimen P.M. Peterson 19503 (US00895358) courtesy of United States National Herbarium (US) B, C image of specimen P.M. Peterson 19124 (US00900682) D image of specimen J.R. Reeder 4662 (US00486613).
Figure 1 from: Sylvester SP, Peterson PM, Romaschenko K, Bravo-Pedraza WJ, Cuta-Alarcon LE, Soreng RJ (2020) New combinations and updated descriptions in Podagrostis (Agrostidinae, Poaceae) from the Neotropics and Mexico. PhytoKeys 148: 21-50. https://doi.org/10.3897/phytokeys.148.50042
Figure 1 Podagrostis bacillata. A Whole plant B spikelets, the center spikelet at anthesis with the palea opened out and the rachilla prolongation visible (indicated with a red arrow) C leaf blades showing the densely scabrous abaxial surface and the central blade opened out to reveal the scabrous adaxial surface. A, B Images of specimen A.M. Evans 145 (US2589766A) courtesy of United States National Herbarium (US) C image of specimen R.W. Pohl 11705A (US3096988).
Fig. 6 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 6. Distribution of Winitia in Thailand. Winitia expansa Chaowasku (■), Winitia longipes (Craib) Chaowasku & Aongyong comb. nov. (●), and Winitia thailandana Chaowasku & Aongyong sp. nov. (▲).
Fig. 3 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 3. Flowers and floral organs of Winitia cauliflora (Scheff.) Chaowasku (A, C, E, G) and Winitia longipes (Craib) Chaowasku & Aongyong comb. nov. (B, D, F, H). A–B. Flowers. C–D. Male flowers with petals removed. E–F. Stamens, abaxial (left) and adaxial (right) sides. G–H. Female flowers with petals removed. A, C, E, G from Chaowasku 185 (CMUB); B from Gardner et al. ST1665 (L); D, F, H from Aongyong 8 (CMUB). Photographs by T. Chaowasku (A) and S. Gardner (B).
Fig. 1 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 1. Phylogram derived from maximum likelihood analysis, with support values shown: SR/BS/PP. Maximally supported clades are represented by thick branches without support values shown; strongly supported clades are represented by thick branches with support values shown; branches without support values shown signify SR <50%, BS <50%, and PP <0.85. ** signifies SR/BS <50%. Scale bar unit = substitutions per site. MAL. = Malmeeae; MON. = Monocarpieae.
Fig. 4 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 4. Flowers and floral organs of Winitia thailandana Chaowasku & Aongyong sp. nov. A–B. Flower. C. Flower with petals removed. D. Stamen, abaxial (above) and adaxial (below) sides. E. Back side of flower, showing sepals (abaxial side). A, B from Gardner & Sidisunthorn ST0817 (L), photographs by S. Gardner; C–E from Aongyong 9 (CMUB).
Fig. 2 in Generic status of Winitia (Annonaceae, Miliuseae) reaffirmed by molecular phylogenetic analysis, including a new species and a new combination from Thailand
Fig. 2. Part of multiple sequence alignment of trnL-trnF intergenic spacer, showing an indel (arrow) potentially diagnostic for generic discrimination in Miliuseae.
Figures 43-47 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 43-47 Bumba lennoni male, IBSP 229902 and female IBSP 229498: (43) bulb in prolateral view; (44) bulb in dorsal view; (45) detail of embolus tip; (46) tibial apophysis, left leg I, ventral view; (47) female genitalia. Scale bars: 43 = 1 mm; 44 = 400 μm; 45, 46 = 1 mm; 47 = 500 μm.
Figures 22-28 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 22-28 Bumba mineiros sp. nov. male and female, IBSP 112230: (22) palpal bulb in ventral view; (23) palpal bulb in prolateral view; (24, 25) detail of embolus tip; (26) tibial apophysis, left leg I, ventral view; (27) detail of embolus tip; (28) female genitalia. Scale bars: 22, 23 = 1 mm; 24, 25 = 100 μm; 26 = 1 mm; 27 = 100 μm; 28 = 500 μm.
Figures 15-21 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 15-21 Bumba rondonia sp. nov. male, IBSP 151868, IBSP 113013 and female IBSP 113015: (15) bulb in prolateral view; (16) detail of embolus tip; (17) bulb in prolateral view; (18) bulb in retrolateral view; (19) tibial apophysis, left leg I, ventral view; (20) female genitalia, dorsal view; (21) female genitalia, ventral view. Scale bars: 15 = 1 mm; 16 = 500 μm; 17, 18 = 1 mm; 19 = 1 mm; 20, 21 = 500 μm.
Figures 56-61 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 56-61 Bumba humile (IBSP): (56, 57) male juvenile; (58, 59) adult, body coloration in live specimen; (60, 61) habitat, Brasil, Bahia, São Desidério. Photo: Victor M. Ghirotto.
Figures 36-42 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 36-42 Bumba tapajos sp. nov. male, IBSP 213497: (36) bulb in retrolateral view; (37) bulb in prolateral view; (38, 39, 40) detail of embolus tip; (41) tibial apophysis, left leg I, ventral view; (42) tibial apophysis, left leg I, prolateral view. Scale bars: 36, 37 = 1 mm; 38, 39, 40 = 500 μm; 41, 42 = 2 mm.
Figures 8-14 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 8-14 Bumba humile male, IBSP 112330, female, IBSP 133660: (8) bulb in retrolateral view; (9, 10, 11) detail of embolus tip; (12) tibial apophysis, Left leg I, ventral view; (13) female genitalia, dorsal view; (14) detail of female genitalia, dorsal view. Scale bars: 8 = 1 mm; 9, 10, 11 = 200 μm; 12, 13 = 2 mm; 14 = 500 μm.
Figures 1-7 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 1-7 Bumba morphological characters: (1) Cuspules on labium (Bumba humile, male, IBSP 112330); (2) detail of embolus tip (B. humile, male, IBSP 119888); (3) palp of B. mineiros sp. nov., retrolateral view, left leg (male, IBSP 112230); (4) detail of embolous tip (B. lenoni, male, IBSP 229902); (5) tricobothria of leg I B. mineiros sp. nov. (male, IBSP 112230); (6) tarsal organ male leg I B. mineiros sp. nov. (male, IBSP 112230); (7) tibial apophysis of B. tapajos sp. nov., ventral view, left leg (male, IBSP 213497). Scale bars: 1 = 500 mm; 2 = 200 μm; 3 = 1 mm; 4 = 1 mm; 5, 6 = 50 μm; 7 = 2 mm.
Figures 29-35 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 29-35 Bumba cuiaba sp. nov. male IBSP 113755 and female IBSP 109108: (29) detail of embolus tip; (30) bulb in retrolateral view; (31) bulb in ventral view; (32) detail of abdomen, longitudinal row, male, dorsal view; (33) tibial apophysis, left leg I, ventral view; (34) detail of embolus tip; (35) female genitalia. Scale bars: 29 = 100 μm; 30, 31 = 500 μm; 32 = 2 mm; 33 = 1 mm; 34 = 300 μm; 35 = 500 μm.
Figures 48-54 from: Lucas SM, Passanha V, Brescovit AD (2020) New combination and redescription of Bumba humile, description of four new species and new records from Brazil (Araneae: Theraphosidae: Theraphosinae). Zoologia 37: 1-17. https://doi.org/10.3897/zoologia.37.e46744
Figures 48-54 Bumba horrida male IBSP 101117, IBSP 229497 and female IBSP 10117, IBSP 229497: (48) bulb in retrolateral view (IBSP 101117); (49) bulb in prolateral view (IBSP 229497); (50) tibial apophysis, left leg I, retrolateral view (IBSP 229497); (51, 52) detail of embolus tip (IBSP 101117); (53) female genitalia (IBSP 229497); (54) female genitalia (IBSP 101117). Scale bars: 48 = 1 mm, 49 = 2 mm; 50, 51 = 1 mm; 52 = 300 μm; 53 = 500 μm, 54 = 2 mm.
Combining genome-wide studies of breast, prostate, ovarian and endometrial cancers maps cross-cancer susceptibility loci and identifies new genetic associations
<p>Data set linked to the paper, "Combining genome-wide studies of breast, prostate, ovarian and endometrial cancers maps cross-cancer susceptibility loci and identifies new genetic associations". Pre-print of the paper is here: <a href="https://doi.org/10.1101/2020.06.16.146803">https://doi.org/10.1101/2020.06.16.146803</a>.</p> <p> </p> <p>cross_cancer_sum_stats.txt.gz contains summary genome-wide association statistics for susceptibility to single cancers (breast (BR), prostate (PR), ovarian (OV), endometrial (EN), estrogen receptor (ER)-positive breast (POS), ER-negative breast (NEG), and high-grade serous ovarian (HGS) cancers) and from the cross-cancer meta-analysis (main [main] and subtype-focused [sub]). EA in the header refers to the effect allele, OA is the other allele, EAF is the effect allele frequency in the largest of the single cancer data sets (BR), IMPR2 is the imputation quality in the largest of the single cancer data sets (BR), SE is the standard error, PVAL is the P-value, RE2Cs1 is the RE2C statistic mean effect part, RE2Cs2 is the RE2C statistic heterogeneity part, RE2Cp* is the RE2C* P-value. More on RE2Cp* can be found here: <a href="http://software.buhmhan.com/RE2C/index.php?mid=contact&act=dispBoardWrite">http://software.buhmhan.com/RE2C/index.php?mid=contact&act=dispBoardWrite</a> and in <a href="https://academic.oup.com/bioinformatics/article/33/14/i379/3953957">https://academic.oup.com/bioinformatics/article/33/14/i379/3953957</a> SNP names in cross_cancer_sum_stats.txt.gz include the chromosome and build 37 position.</p> <p> </p> <p>main_tetrachoric_corr_matrix.txt and subtype_tetrachoric_corr_matrix.txt provide the tetrachoric correlation matrices used in the main and subtype-focused meta-analyses. These were also used to specify the cryptic.cor argument of the exh.abf function of MetABF. More on MetABF can be found here: <a href="https://github.com/trochet/metabf">https://github.com/trochet/metabf</a> and in <a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/gepi.22202">https://onlinelibrary.wiley.com/doi/abs/10.1002/gepi.22202</a></p> <p> </p> <p>prior_sigmas_for_metabf.txt contains the values used to specify the prior.sigma argument of the exh.abf function in MetABF.</p> <p> </p> <p>The breast cancer data used are described in <a href="https://pubmed.ncbi.nlm.nih.gov/29059683/"><strong>PMID 29059683</strong></a> and can be downloaded from <a href="http://bcac.ccge.medschl.cam.ac.uk/bcacdata/oncoarray/oncoarray-and-combined-summary-result/gwas- summary-results-breast-cancer-risk-2017/">http://bcac.ccge.medschl.cam.ac.uk/bcacdata/oncoarray/oncoarray-and-combined-summary-result/gwas- summary-results-breast-cancer-risk-2017/</a> (this link also includes acknowledgements). The prostate cancer data are described in <a href="https://pubmed.ncbi.nlm.nih.gov/29892016/"><strong>PMID 29892016</strong></a> and can be downloaded from: <a href="http://practical.icr.ac.uk/blog/?page_id=8164">http://practical.icr.ac.uk/blog/?page_id=8164</a> (this link also includes acknowledgements). The ovarian cancer data used are described in <a href="https://pubmed.ncbi.nlm.nih.gov/28346442/"><strong>PMID 28346442</strong></a> and can be downloaded from <a href="https://www.ebi.ac.uk/gwas/studies/GCST004415">https://www.ebi.ac.uk/gwas/studies/GCST004415</a>. The endometrial cancer data are described in <a href="https://pubmed.ncbi.nlm.nih.gov/30093612/"><strong>PMID 30093612</strong></a> and can be downloaded from <a href="https://www.ebi.ac.uk/gwas/studies/GCST006464">https://www.ebi.ac.uk/gwas/studies/GCST006464</a>. These links point to the same data that form the basis of the cross_cancer_sum_stats.txt.gz file.</p> <p> </p> <p><strong>The sample size and precision of the data presented should preclude identification of any individual study participant. However, in downloading these data, you undertake not to attempt to identify individual study participant and not to re-post these data to a third-party website. Please cite the PMIDs highlighted above along with the appropriate acknowledements if you use the cross_cancer_sum_stats.txt.gz file.</strong></p> <p> </p> <p>If you have any questions about this repository, please email Siddhartha Kar at siddhartha dot kar at bristol dot ac dot uk</p>
FIGURE 2 in A new Indian species of the orb-weaving spider genus Glenognatha Simon, 1887 with a new combination and a new synonymy of Tylorida marmorea (Pocock, 1901) (Araneae, Tetragnathinae)
FIGURE 2. Collecting locality of Glenognatha paullula n. sp.
Figure 5 from: Yang L-H, Wen F, Kong H-H, Sun Z-X, Su L-Y, Kang M (2020) Two new combinations in Oreocharis (Gesneriaceae) based on morphological, molecular and cytological evidence. In: Shui Y-M, Chen W-H, Ren M-X, Wen F, Hong X, Qiu Z-J, Wei Y-G, Kang M (Eds) Taxonomy of Gesneriaceae in China and Vietnam. PhytoKeys 157: 43-58. https://doi.org/10.3897/phytokeys.157.32609
Figure 5 Geographical distribution of Oreocharis guileana (green dot), O. baolianis (red triangle) and O. pilosopetiolata (blue square).
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.