Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
3,696
datasets available to search
ShareScore release 0.9.0
Dataset results
3,696 results for “reference”
Mid-Atlantic Satellite Derived Shorelines, Transects, Trends, Reference Shorelines, Timeseries Data
<p>Geographic scope: Delmarva Peninsula, New Jersey Shore, Long Island (ocean side)</p> <p>Temporal range: 1984-2022 (variable timespacing)</p> <p>Satellites: L5, L7, L8, S2</p> <p>The shorelines and timeseries data were extracted with code and models available at <a href="https://github.com/mlundine/Shoreline_Extraction_GAN">https://github.com/mlundine/Shoreline_Extraction_GAN</a>.</p> <p>Each region's folder contains the extracted shorelines, the transects (200 m longshore spacing), the transects scaled to the linear trends, the reference shoreline, the csvs for each transect's cross-shore position timeseries (Region_#.csv) and the linear fit (Site_#_linear_trend.csv). The cross-shore positions here have not been corrected to tides or wave data. Feel free to experiment with corrections and/or timeseries analysis tools.</p> <p> </p> <p> </p>
The ztd estimated values from three models named Site-wise, Grid-wise, and GPT3 and the ztd reference values provided by IGS between 2016 and 2020.
<p>The data includes the zenith total delay (ztd) values computed by three models provided by the VMF data server, namely <strong>Site-wise, Grid-wise, and GPT3</strong>, for target stations during the period from 2016 to 2020, along with the corresponding ztd values extracted from <strong>IGS-ztd</strong> for the respective sites and epochs.</p> <p>These data are utilized for specific accuracy analysis and model evaluation.</p>
CSRM-1.0: A China Seismological Reference Model
<p>This high-resolution CSRM-1.0 is constructed for the top 100 km of the crust and uppermost mantle in continental China, based on the constraints of the <em>P</em>-wave polarization angle, short-period Rayleigh wave ellipticity from ambient noise, long-period Rayleigh wave ellipticity from earthquake data, receiver function, empirical Green's function, Rayleigh wave phase/group velocity dispersion curves from regional earthquakes, and <em>Pn</em>-wave travel time extracted from seismic data of 4435 seismic stations during 1990 and 2020. The CSRM-1.0 has a spatial crustal resolution of about <strong>60 km</strong> beneath the north-south seismic belt and the trans-north China orogen and about <strong>120 km</strong> beneath the rest of continental China, and a spatial mantle resolution of about <strong>300 km</strong>. The seismic constraints used for the construction of the model consist of the <strong>479,321</strong> polarization angle measurements from the P-wave waveforms of 9361 tele-seismic earthquakes, the short-period (4 - 8 s) Rayleigh wave ellipticity estimated from continuous seismic ambient noise waveforms recorded by <strong>4211</strong> seismic stations, the <strong>622,972 </strong>receiver functions calculated based on the waveforms of 9361 tele-seismic events, the <strong>639,171 </strong>inter-station empirical Green's functions from seismic ambient noise, the long-period (20 - 80 s) Rayleigh wave ellipticity estimated from earthquake waveform data of <strong>4193</strong> seismic stations, the <strong>54,792 </strong>event-staion Rayleigh wave dispersion curves from regional earthquakes, and the <strong>50,867 </strong><em>Pn</em>-wave travel time data. Please click on <a href="https://doi.org/10.5281/zenodo.8103561"><strong>link</strong></a> for the datasets. Click <a href="https://doi.org/10.1029/2024JB029520"><strong>link</strong></a> for the paper. Please click <a href="http://chinageorefmodel.org/csrm-visualizers/csrm-1-0-visualizer">link</a> for online visualization of the CSRM-1.0.</p> <p>高分辨率的 CSRM-1.0 是中国大陆地区地壳和上地幔顶部 100 公里的三维地震学模型。构建该模型的地震学约束提取自 1990 至2020 年期间 <strong>4435 </strong>个台站记录的地震数据,包括远震 <em>P </em>波极化角度,从地震背景噪声提取的短周期瑞利波椭率,远震接收函数,从地震背景噪声提取的经验格林函数,从区域地震提取的瑞利波相/群速度频散曲线,以及 <em>Pn</em> 波走时。CSRM-1.0 模型在南北地震带和华北造山带的地壳中的空间分辨率约为 <strong>60 km </strong>而在中国大陆其他地区的地壳中分辨率约为 <strong>120 km</strong>,并且其在中国大陆上地幔顶部的分辨率约为 <strong>300 km</strong>。用于构建模型的地震学约束包括利用 9361 个远震事件 P 波波形测量得到的 <strong>479,321</strong> 个极化角度测量值,利用 <strong>4211</strong> 个地震台站连续地震背景噪声波形数据测量的短周期(4-8 秒)瑞利波椭率,基于 9361个远震事件波形计算的 <strong>622,972 </strong>条接收函数,利用地震背景噪声数据中计算的 <strong>639,171 </strong>条台站间经验格林函数,利用 <strong>4193 </strong>个台站记录的地震波形数据测量的长周期(20-80 秒)瑞利波椭率,利用区域地震波形计算的 <strong>54,792</strong> 条事件-台站间瑞利波频散曲线,以及 <strong>50,867 </strong>个 Pn 波走时数据。下载上述数据库请点击<strong><a href="https://doi.org/10.5281/zenodo.8103561">链接</a></strong>。查看文章请点击<a href="https://doi.org/10.1029/2024JB029520"><strong>链接</strong></a>。模型在线绘图请点击<a href="http://chinageorefmodel.org/csrm-visualizers/csrm-1-0-visualizer">链接</a>。</p> <p>If you face any problem or issue in the usage of this model, please feel free to communicate with the corresponding author Xiao Xiao (<strong>xiaox.seis@gmail.com</strong>). </p>
Dataset - No Reference Image Quality assessment Scores for Humanities Online Repositories
<p>The dataset contains data on No-Reference Image Quality Assessment (NR-IQA) scores for online repositories in the humanities.</p>
A tufA reference sequence library for the green algal genus Caulerpa (Bryopsidales)
<p>A 1230 nucleotide <em>tuf</em>A gene sequence alignment (in fasta format) of 89 <em>Caulerpa</em> species and nine '<em>Pseudochlorodesmis</em>' species, a Maximum Likelihood phylogeny (pdf file) based on this alignment, and an Excel file with listing details about all taxa included. These were first published in Draisma & Sauvage (2024): Jeju Journal of Islands Sciences 1: 1-11.</p> <p>https://www.jjis.or.kr/articles/xml/VxXM/</p> <p> </p>
1000 Genomes and S-LDSC reference files for CT-FM (Kim et al., 2024, in prep)
Open the record for dataset details and reuse information.
ccRCC reference datasets to benchmark UnitedMet
Open the record for dataset details and reuse information.
Supporting data for: "mtGrasp: Streamlined mitochondrial genome reference-grade assembly and standardization to enhance mitogenome resources and improve the development of environmental DNA assays"
<p>Here, we provide supporting data for the manuscript "mtGrasp: Streamlined mitochondrial genome reference-grade assembly and standardization to enhance mitogenome resources and improve the development of environmental DNA assays".</p> <p>Phylogenetic_analysis.tar.gz contains the script and fasta files used for the phylogenetic analysis, and Mitogenomes.tar.gz contains the mitochondrial sequences utilized that are not publicly available in GenBank.</p>
Bond graph references
<p>Complete database of bond graph publications</p>
Output files of the reference model from Baïsset et al. paper entitled « Weakening induced by phase nucleation in metamorphic rocks: insights from numerical models »
<p>Here you can find the Output files of the Reference Model.</p> <p>These files can be read using the files "ReadHDF5_Baisset2024.m" provided with the code here: </p> <p>https://doi.org/10.5281/zenodo.11473988</p> <p> </p>
1K_genomes_reference_panel
<p>The 1K Genomes Reference Panel for Europeans was downloaded from the GitHub repository of LOGODetect (https://github.com/ghm17/LOGODetect).</p>
Variant metadata for 1K genomes reference panel
<p>1K genomes reference panel - variant metadata</p>
Human reference files for YASIM-scTCR
<p>Updates:</p> <ul> <li>2024/06/24: Added missing gene usage bias and CDR3 deletion/insertion tables from huARdb.</li> </ul>
Reference plasmids for KleTy and PlasT
Open the record for dataset details and reuse information.
Lab_02_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_02_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1> <p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank" rel="noopener">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p> <p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="../doi/10.5281/zenodo.10081970" target="_blank" rel="noopener">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank" rel="noopener">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="../doi/10.5281/zenodo.10081970" target="_blank" rel="noopener">here</a>.</p> <p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
Lab_32_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards
<h1>Lab_32_SOP - Concordant inter-laboratory derived concentrations of ceramides in human plasma reference materials via authentic standards - mzML files</h1><p>This dataset is part of the <a href="https://doi.org/10.5281/zenodo.12632989" target="_blank">ILS Ceramide Ring Trial</a>. The suffix 'SOP' indicates that the results were obtained using the recommended and standard operating procedure protocol to prepare and measure all samples, while the suffix 'OTHER' indicates that the corresponding lab prepared and measured the samples according to their own internal protocol. Please check the corresponding mapping file 'ILS-Ceramide-Ring-Trial-Datasets.csv' in the ILS Ceramide Ring Trial record for a mapping of the originally submitted lab reports and the final lab number as reported in the manuscript.</p><p>All reports together with the code for analysis and visualization, reproducing the figures in the manuscript, are available under the following doi: <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">https://zenodo.org/doi/10.5281/zenodo.10081970</a>. This links to releases of the following GitHub repository: <a href="https://github.com/lifs-tools/ils-ceramide-ring-trial" target="_blank">https://github.com/lifs-tools/ils-ceramide-ring-trial</a>. The archived version of the lab reports, workflow source code and manuscript visualizations are also available <a href="https://zenodo.org/doi/10.5281/zenodo.10081970" target="_blank">here</a>.</p><p>Please note that most datasets have been acquired in MRM mode, such that the msconvert conversion to mzML has stored the MRM data in the chromatogram part of the mzML files.</p> <p>The msconvert Docker container (Proteowizard release: 3.0.24172 (63d00b1), build date Jun 202 2024 20:01:14) was used with the native vendor libraries / peak picking for conversion, using default arguments. m/z values were encoded with 64 bit (default), while intensity values were encoded with 32 bit (default). All binary data was zlib-compressed.</p>
FIGURE 1 in Two new species of the genus Daptonema Cobb, 1920 (Nematoda: Xyalidae) found in an intertidal seagrass bed on the coast of the Andaman Sea, Thailand, with reference to the taxonomic status of the genus Trichotheristus Wieser, 1956
FIGURE 1. Daptonema chonispiculum sp. n. Male (Holotype ICHUM 5323; left side view): A) Entire body. B) Anterior region. C) Head region. D) Posterior region. E) Spicules and gubernaculum. Female (Allotype ICHUM 5324; left side view): F) Entire body. G) Vulval region. H) Posterior region. Bar scales: A, F, 100 µm; B, D, H, 40 µm; C, E, 10µm; G, 40 µm.
FIGURE 3 in Two new species of the genus Daptonema Cobb, 1920 (Nematoda: Xyalidae) found in an intertidal seagrass bed on the coast of the Andaman Sea, Thailand, with reference to the taxonomic status of the genus Trichotheristus Wieser, 1956
FIGURE 3. Daptonema phuketense sp. n. Male (Holotype ICHUM 5330, left side view): A) Copulatory apparatus and caudal glands. B) Caudal glands. Female (Paratype KUMF-T0016; left dorso-lateral view): C) Caudal glands. Bar scales: A, C, 20 µm; B, 10 µm. Arrows indicate the third caudal gland.
4G/LTE Channel Quality Reference Signal Traces Data Set
<p>Mobile networks, especially LTE networks are used more and more for high-bandwidth services like multimedia or video streams. The quality of the data connection plays a major role in the perceived quality of a service. Videos may be presented in a low quality or experience a lot of stalling events when the connection is to slow to buffer the next frames for playback. So far, no publicly available data set exists that has a larger number of LTE network traces and can be used for deeper analysis. In this data set, we provide 546 traces of 5 minutes each with a sample rate of 100 ms. Thereof 377 traces are pure LTE data. We furthermore provide an Android app to gather further traces as well as R scripts to clean, sort, and analyze the data. </p>
FIGURES 132–145 in Australian Diplectroninae reviewed (Insecta: Trichoptera), with description of 21 new species, most referred to a new genus
FIGURES 132–145. Arcyphysa gen. nov. spp., ♂ genitalia diagnostic features. 132–133, Arc. acmea sp. nov. (Qld, Mt Bartle Frere, 0.5 km N of South Peak [PT-999]): 132, ventral; 133, left lateral. 134–135, Arc. anaplasis sp. nov. (Qld, 25 km along Mt Lewis Road, SW of Mossman [PT-1003]): 134, ventral; 135, left lateral. 136–137, Arc. tortula sp. nov. (Qld, Bellenden Ker Range, Cable Tower No. 3 [PT-1031]): 136, ventral; 137, left lateral. 138–140, Arc. flinti sp. nov. (Qld, Palmerston National Park, Tchooratippa Creek [PT-2007]): 138, ventral; 139, left lateral; 140, dorsal. 141–142, Arc. volsella sp. nov. (Qld, Queensland, Lamington National Park, Coomera Creek [PT-1013]): 141, ventral; 142, left lateral. 143–145, Arc. nebo sp. nov. (Qld, Mt Nebo [PT-1096]): 143, dorsal; 144, left lateral; 145, ventral.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.