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17,039
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17,039 results for “Natural”
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Władysław Szafer, <a href="http://www.wikidata.org/entity/Q322052">http://www.wikidata.org/entity/Q322052</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Joseph Dombey, <a href="http://www.wikidata.org/entity/Q3090205">http://www.wikidata.org/entity/Q3090205</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by James Wood-Mason, <a href="http://www.wikidata.org/entity/Q3161496">http://www.wikidata.org/entity/Q3161496</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by John A. Ruth, <a href="http://www.wikidata.org/entity/Q117800653">http://www.wikidata.org/entity/Q117800653</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Francisco Joaquim Dias Quintas, <a href="http://www.wikidata.org/entity/Q130288352">http://www.wikidata.org/entity/Q130288352</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by D. Monty Wood, <a href="http://www.wikidata.org/entity/Q21772597">http://www.wikidata.org/entity/Q21772597</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Marie-Victorin, <a href="http://www.wikidata.org/entity/Q2596174">http://www.wikidata.org/entity/Q2596174</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Károly Flatt von Alföld, <a href="http://www.wikidata.org/entity/Q21513207">http://www.wikidata.org/entity/Q21513207</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Charles Robert Senhouse Pitman, <a href="http://www.wikidata.org/entity/Q2960131">http://www.wikidata.org/entity/Q2960131</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Jan Nevole, <a href="http://www.wikidata.org/entity/Q70987413">http://www.wikidata.org/entity/Q70987413</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Paul Hiepko, <a href="http://www.wikidata.org/entity/Q21515790">http://www.wikidata.org/entity/Q21515790</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Alfred Kinsey, <a href="http://www.wikidata.org/entity/Q186561">http://www.wikidata.org/entity/Q186561</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Conservation outcomes of dietary transitions across different values of nature - model outputs
<p>Archive of output reports produced for the MAgPIE v4.8.2 paper <strong>Conservation outcomes of dietary transitions across different values of nature</strong>.</p> <p><strong>Data</strong></p> <p>The data contain the MAgPIE model and post-processing outputs for all assessed scenarios, including the sensitivity test across the SSP1 and SSP3 scenarios.</p> <ul> <li>The file <em>rev9_healthyLscps_AOH_full_report.Rds </em>contains the outputs of our Area of Habitat (AOH) assessment for all assessed species and across all scenarios. The summary statistics shown in Figure 2 and Figure 3 have been derived from this data set. The data has also been used to create Extended Data Figures<span lang="EN-GB"> 5-</span>7<span lang="EN-GB"> and is shown in the Supplementary Information. </span>However, for Extended Data Figure<span lang="EN-GB"> 7</span> the data was <span lang="EN-GB">used in combination</span> with <span lang="EN-GB">rasterized </span>range polygons obtained from the <span lang="EN-GB">IUCN Red List Database (IUCN 2020).</span></li> <li><span lang="EN-GB">The file <em>rev9_healthyLscps_pollSuff_report_all.Rds </em>reports the global and regional cropland area (Mha) that is subject to insufficient and sufficient pollination supply. This is specified in the column ‘poll_class’, where 1 is insufficient and 2 is sufficient pollination supply. The data is shown in Figure 4, Extended Data Figure 8 and the Supplementary Information.</span></li> <li><span lang="EN-GB">The file <em>rev9_healthyLscps_RUSLE_report_all.Rds</em> reports estimated global and regional soil loss in Pg per year across all modelled scenarios. The data is displayed in Figure 4, Extended Data Figure 9 and the Supplementary Information.</span></li> <li><span lang="EN-GB">The file <em>rev9_healthyLscps_allSSP_report.rds </em>contains regional and global output variables from the MAgPIE model used in this study. The data is shown in Figure 1 and 5, as well as in Extended Data Figures 2-4 and the Supplementary Information.</span></li> <li><span lang="EN-GB">The file <em>rev9_healthyLscps_validation.rds </em>contains validation data for the MAgPIE model output variables.</span></li> </ul> <p> </p> <p><strong><span lang="EN-GB">Model code</span></strong></p> <p>The model code of the MAgPIE and SEALS models can be accessed via:</p> <p><em>MAgPIE model code</em><em>:</em></p> <ul> <li><a href="https://doi.org/10.5281/zenodo.13833444">https://doi.org/10.5281/zenodo.13833444</a> and <a href="https://github.com/magpiemodel/magpie">https://github.com/magpiemodel/magpie</a></li> </ul> <p><em>MAgPIE model documentation</em><em>:</em></p> <ul> <li><a href="https://rse.pik-potsdam.de/doc/magpie/4.3.5/">https://rse.pik-potsdam.de/doc/magpie/4.8.2/</a></li> </ul> <p><em>SEALS model code</em><em>:</em></p> <ul> <li><a href="https://github.com/jandrewjohnson/seals_dev/releases/tag/v1.0.0">https://github.com/jandrewjohnson/seals_dev/releases/tag/v1.0.0</a></li> </ul> <p><em>SEALS mode documentation:</em></p> <ul> <li><a href="https://justinandrewjohnson.com/earth_economy_devstack/seals_overview.html">https://justinandrewjohnson.com/earth_economy_devstack/seals_overview.html</a></li> </ul> <p> </p> <p><strong><span lang="EN-GB">Cited references</span></strong></p> <p><span>IUCN. (2020). <em>The IUCN Red List of Threatened Species. Version 2020-2</em>. https://www.iucnredlist.org.</span><em><span> </span></em><span>Downloaded on 25 November 2020</span></p>
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Franz Thonner, <a href="http://www.wikidata.org/entity/Q3083161">http://www.wikidata.org/entity/Q3083161</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Santiago Castroviejo, <a href="http://www.wikidata.org/entity/Q3392622">http://www.wikidata.org/entity/Q3392622</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
ISDB: In Silico Spectral Database (of Natural Products)
<h1><strong>ISDB: In Silico DataBase (of Natural Products)</strong></h1> <h2><strong>Background</strong></h2> <p>The ISDB repository contains in silico fragmented spectra of natural products, generated using <strong>cfm-predict 4</strong> <a href="https://doi.org/10.1021/acs.analchem.1c01465" target="_new" rel="noopener">(DOI: 10.1021/acs.analchem.1c01465)</a>.</p> <p>The initial database preparation and its application for dereplication were first described in:<br><strong>Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication</strong> <a href="https://doi.org/10.1021/acs.analchem.5b04804" target="_new" rel="noopener">(DOI: 10.1021/acs.analchem.5b04804)</a>.</p> <h2><strong>Content</strong></h2> <p>Previous versions of ISDB contained predicted spectra for compounds aggregated within the <strong>LOTUS Initiative</strong> <a href="https://doi.org/10.7554/eLife.70780" target="_new" rel="noopener">(DOI: 10.7554/eLife.70780)</a> and included only "merged" spectra.</p> <p>This version expands beyond taxon-restricted compounds and includes:</p> <ul> <li>Individual in silico spectra predictions (<strong>~1 million</strong>)</li> <li><strong>Substructure annotations</strong></li> <li>Data for compounds from <strong>Wikidata</strong> and <strong>LOTUS</strong></li> </ul> <h2><strong>File Structure</strong></h2> <h3><strong><code>.zip</code> Files</strong></h3> <p>Each <code>.zip</code> file contains:</p> <ul> <li>All original outputs from <strong>cfm-predict 4</strong></li> <li>Substructure annotations</li> </ul> <h3><strong>Wikidata vs LOTUS Files</strong></h3> <ul> <li><strong>Wikidata files</strong>: Contain spectra for nearly all compounds found in Wikidata, obtained using this query: <a href="https://w.wiki/Cvdo" target="_new" rel="noopener">https://w.wiki/Cvdo</a>.</li> <li><strong>LOTUS files</strong>: Contain spectra only for compounds with a "found in taxon" (<code>P703</code>) statement, obtained using this query: <a href="https://w.wiki/D35x" target="_new" rel="noopener">https://w.wiki/D35x</a>.</li> </ul> <h3><strong>Energy Levels: <code>energyAll</code> vs <code>energySum</code></strong></h3> <ul> <li><strong><code>energyAll</code> files</strong>: Include spectra for three individual energy levels plus a summed spectrum (4 spectra per polarity per compound).</li> <li><strong><code>energySum</code> files</strong>: Contain only the summed spectrum (1 spectrum per polarity per compound).</li> </ul> <h2><strong>Related Resources</strong></h2> <ul> <li><strong>Building scripts</strong>: <a href="https://github.com/mandelbrot-project/spectral_lib_builder" target="_new" rel="noopener">https://github.com/mandelbrot-project/spectral_lib_builder</a></li> <li><strong>Matching scripts</strong>: <a href="https://github.com/mandelbrot-project/spectral_lib_matcher" target="_new" rel="noopener">https://github.com/mandelbrot-project/spectral_lib_matcher</a></li> </ul>
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Louise Forney Arnold Tanger, <a href="http://www.wikidata.org/entity/Q21610180">http://www.wikidata.org/entity/Q21610180</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by George Washington Letterman, <a href="http://www.wikidata.org/entity/Q112805614">http://www.wikidata.org/entity/Q112805614</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Hans Wolfgang Limpricht, <a href="http://www.wikidata.org/entity/Q16671329">http://www.wikidata.org/entity/Q16671329</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
Natural history specimens collected and/or identified and deposited.
Natural history specimen data collected and/or identified by Ida Kaplan Langman, <a href="http://www.wikidata.org/entity/Q28037295">http://www.wikidata.org/entity/Q28037295</a>. Claims or attributions were made on Bionomia, <a href="https://bionomia.net">https://bionomia.net</a> using specimen data from the Global Biodiversity Information Facility, <a href="https://gbif.org">https://gbif.org</a>.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.