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3,172 results for “Publications”
Supplementary material 2 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Annotations made during the workshop : Explanation note: The annotations made during the workshop shown with original INSDC data. For the BMS, we targeted nine MIxS-BE items plus country of collection, host of collection, host association, and a general "Comment" field. For the OMS, we targeted country of collection, host of collection, host association, and a general "Comment" field.
Supplementary material 2 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
IPNI response XML : Explanation note: XML response of IPNI to the query in Suppl. material 1. The response is sent back to Pensoft and contains the registration numbers of the new genus name and the new combination [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 4 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
TaxPub response XML : Explanation note: TaxPub XML returned from ZooBank to Pensoft containing UUIDs of the article, authors and new taxon names [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 1 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of IPNI : Explanation note: XML query sent from Pensoft to IPNI on the day of acceptance of the manuscript for publication [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 3 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of TaxPub : Explanation note: TaxPub XML of a ready-to-publish manuscript submitted from Pensoft to ZooBank [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 3 from: Schindler S, Staska B, Adam M, Rabitsch W, Essl F (2015) Alien species and public health impacts in Europe: a literature review. NeoBiota 27: 1-23. https://doi.org/10.3897/neobiota.27.5007
Spatial scale and location of the original and review articles: Explanation note: Spatial scale (global, continental, subcontinental, national, subnational, Local lab/field trials) and location of the original (n=56) and review (n=21) articles.
Supplementary material 1 from: Schindler S, Staska B, Adam M, Rabitsch W, Essl F (2015) Alien species and public health impacts in Europe: a literature review. NeoBiota 27: 1-23. https://doi.org/10.3897/neobiota.27.5007
Literature on human health impacts by alien species in Europe used in this review (n=77 articles): Explanation note: Literature on human health impacts by alien species in Europe used in this literature review (n=77 articles). Given are article type, full citation, authors, publication year, journal (source) name, species under concern, taxonomic group, spatial scale, country / region, invasion stage-impact-management, climate change impact, criterion, trend in criterion, severity of impact, trend of impact, management measures, costs, origin, and pathway of first introduction.
Supplementary material 2 from: Schindler S, Staska B, Adam M, Rabitsch W, Essl F (2015) Alien species and public health impacts in Europe: a literature review. NeoBiota 27: 1-23. https://doi.org/10.3897/neobiota.27.5007
Alien species studied in the 56 original articles.: Explanation note: Alien species studied in the 56 original articles, their regions of origin (continents) and their introduction pathways.
Austrian Science Fund (FWF) publication costs in 2013 for journal articles_Exercise-workshop open science
<p>FWF journal publication costs 2013 used for the open science workshop, 27.09.2017</p> <p><strong>Austrian Science Fund (FWF) publication costs in 2013 for journal articles</strong><strong> </strong></p> <p> </p> <p>This dataset is licensed under a CC-0 license. </p> <p> </p> <p><strong>Explanation of data - Overview</strong><strong> </strong></p> <p> </p> <p>The dataset includes payments for articles of authors funded by the Austrian Science Fund (FWF) via the program 'Peer Reviewed Publications', see: http://www.fwf.ac.at/en/projects/peer-reviewed_publications.html </p> <p>The dataset only includes information when costs were applied via the program Peer Reviewed Publications. If an author has covered the costs by the global budget of his/her research project, by other resources or the publisher provides a Gold OA service free of charge, this information is not included in this dataset. </p> <p> </p> <p>Payments are either reimbursed to the authors or directly paid to the publishers by the FWF.</p> <p> </p> <p>The data slightly differs from FWF's annual report 2013 because this dataset does not include payments for Proceedings, Open Access Books, repayments by publishers in the case of double payments or submission fees for articles which were not published. </p> <p><strong>The dataset contains the following elements</strong><strong> </strong> </p> <p><strong>DOI/PMID</strong></p> <p>Usually the DOI-number (Digital Object Identifier) of an article is listed, and the PMID (PubMed ID) where DOI is not available. In very few cases, no permanent identifier exists. </p> <p><strong>COST TYPE </strong></p> <p>(1) Gold Open Access and (2) Hybrid Open Access are defined by FWF's Open Access Policy, see: http://www.fwf.ac.at/en/public_relations/oai/index.html</p> <p>(3) "Other publication costs" are defined as additional costs to the subscription price charged by subscription journals (i.e. submission fees, colour charges, page charges, figure charges, table charges, supplemental charges.) </p> <p> </p> <p><strong>COST </strong></p> <p>Some articles are listed twice because they are charged for Hybrid Open Access as well as for Other publication costs. These articles are marked in <strong>red</strong> in the field "Article Title." </p> <p> </p> <p>All costs have been converted into EURO (€) and include VAT where applicable. </p> <p> </p> <p>Different prices for the same journal are caused either by exchange rate fluctuation or by cost sharing among authors. When these differences are small, it can be assumed that this reflects exchange rate fluctuations. Where they are significant, then it should be assumed that other funders have contributed to the cost of that APC (Article Processing Charge), and the figure cited is the FWF contribution to that APC. </p> <p><strong>ARTICLE TITLE </strong></p> <p>This is the title of the article as stated on the journal website. </p> <p> </p> <p><strong>JOURNAL TITLE </strong></p> <p>Most journal title information were collected from Scopus but some were entered manually. </p> <p> </p> <p><strong>PUBLISHER </strong></p> <p>Sources for publisher names are: (a) Romeo/Sherpa-database or (b) the journal websites. </p> <p><strong>YEAR OF PUBLICATION </strong></p> <p>It shows the year of publication of an article reimbursed/paid in 2013 by the FWF.</p> <p> </p> <p>In some cases, there is a time lag of a year and more between the year of publication and the payment in 2013. That is mostly explained by administrative delays. However, it was monitored by the FWF that these articles were made Open Access by the publishers at the date of online publication. In very few cases, some days of delay were tolerated. For the cases in questions, see "Notes".</p> <p> </p> <p><strong>OPEN ACCESS </strong></p> <p>"OA" is used when APCs were charged either for an article in an Open Access journal or for Hybrid Open Access in a subscription journal.</p> <p> </p> <p><strong>LICENSE</strong></p> <p>Status of licenses are tracked according to Open Article Gauge,</p> <p> </p> <p><strong>NOTES</strong></p> <p>Additional information, if necessary.</p> <p> </p> <p> </p>
FIGURE 2 in The Brachyura (Crustacea: Decapoda) of the Deutschen Tiefsee-Expedition auf dem Dampfer 'Valdivia' 1898 - 1899: dates of publications and authorship
FIGURE 2. Figures of the four names for the Brachyura that were first made available in Aus den Tiefen des Weltmeeres (Chun 1900; 1902–1903) which preceded their formal description in Doflein (1904). A, Scyramathia hertwigi Doflein in Chun, 1900 (p. 497); B, Homolochunia Doflein in Chun, 1903 (p. 533); C, Trichopeltarium [sic] alcocki Doflein in Chun, 1903 ([in 1902– 1903], p. 531); D, Geryon paulensis Doflein in Chun, 1903 ([in 1902–1903], p. 531). The captions are as follow: A, "Scyramathia Hertwigi Doflein n. sp. Agulhas-Bank, 500 m. Nat. Grösse. (Doflein gez.)"; B, "Homolochunia n. gen. Dofl. Homolide mit Stirngeweih und Scheren am fünften fusspaare. Ostafrikan. Küste, 977 m. Nat. Grösse"; C, "Trichopeltarion Alcocki ♂ n. sp. Dofl. 750 m. Siberut-Strasse. Nat. Grösse. (Doflein phot.)"; D, "Geryon Paulensis n. sp. Dofl. St. 172. Im südl. Indischen Ocean 2068 m. Nat. Grösse. (Doflein phot.)". The figures were original printed at life-size ("Nat. Gröse") but A and B have herein been reduced to 55 percent of the original printed size. Images from works no longer in copyright digitised by the Universitätsbibliotek Universität Regensburg (Chun 1900) and Biodiversity Heritage Library (Chun 1902–1903).
FIGURE 1 in The Brachyura (Crustacea: Decapoda) of the Deutschen Tiefsee-Expedition auf dem Dampfer 'Valdivia' 1898 - 1899: dates of publications and authorship
FIGURE 1. The Deutschen Tiefsee-Expedition auf dem Dampfer 'Valdivia' 1898–1899. A, the steamer Valdivia in Aden (from an unnumbered plate following the contents page of Chun 1902–1903); B, the title-page of the first Auflage ('edition') of Aus den Tiefen des Weltmeeres (Chun 1900); C, the title-page of the second Auflage of the same work (Chun 1902–1903); D, the frontispiece of Chun (1900) showing evidence that the work was issued in Lieferungen ('gatherings'). Images from works no longer in copyright digitised by the Universitätsbibliotek Universität Regensburg (Chun 1900) and Biodiversity Heritage Library (Chun 1902–1903).
Qu'est-ce qu'une machine linguistique ? Annexes à la publication
<p><strong>Qu’est-ce qu’une machine linguistique ? </strong>Épistémologie de la technique et linguistique instrumentée</p> <p>Pierre-Yves Modicom, Université Bordeaux Montaigne</p> <p><strong>ANNEXES À LA PUBLICATION</strong></p> <p>Compte tenu des contraintes du support, le texte ne permet que la reproduction en nombre limité d’images noir et blanc et au format vignette. Je redonne ici l’ensemble des figures « inédites » mentionnées en note, puis je donne une version en couleur et agrandie des figures N & B du texte. Toutes les images sont des captures d’écran réalisées par moi et sont sous</p> <p>licence CC BY-NC-SA.</p>
Supplementary material 1 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The sequences renamed during the workshop. The INSDC accession number, the original INSDC name, and the new UNITE name are shown :
Supplementary material 3 from: Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel H-M, Glassman SI, Hirooka Y, Irinyi L, Iršėnaitė R, Martin-Sanchez PM, Meyer W, Oh S-Y, Sampaio JP, Seifert KA, Sklenář F, Stubbe D, Suh S-O, Summerbell R, Svantesson S, Unterseher M, Visagie CM, Weiss M, Woudenberg JHC, Wurzbacher C, den Wyngaert SV, Yilmaz N, Yurkov A, Kõljalg U, Abarenkov K (2018) Taxonomic annotation of public fungal ITS sequences from the built environment – a report from an April 10–11, 2017 workshop (Aberdeen, UK). MycoKeys 28: 65-82. https://doi.org/10.3897/mycokeys.28.20887
The metadata annotations for the sequences that were found in the same SHs as sequences from the built environment :
FIGURE 2 in Fleas (Insecta: Siphonaptera) with public health relevance in domestic pigs (Artiodactyla: Suidae) from Argentina
FIGURE 2. Geographical distribution in Argentina of Ctenocephalides felis felis (x) and Pulex irritans (●) (Lareschi et al. 2016): 1— Tucumán, 2—Santiago del Estero, 3—Gran Chaco, Chaco, 4—Los Yngleses, Buenos Aires, 5—Ajó, Buenos Aires, 6—La Pampa, 7—Orán (Isla de Cañas), Salta, 8—El Quebrachal, Salta, 9—Formosa, 10—Tucumán, 11—Chumbicha, Catamarca, 12—Quines, San Luis, 13—San Luis capital, 14—Las Catitas, Mendoza, 15—La Paz, Mendoza, 16—San Rafael, Mendoza, 17—Los Molles, Mendoza, 18-Malargüe, Mendoza, 19—Santa Eufemia, Córdoba, 20—Cañada Mariano, Buenos Aires, 21—Ajó (General Lavalle), Buenos Aires, 22—Bahía Blanca, Buenos Aires, 23—Pilcaniyeu, Río Negro, 24—Lago Epuyén, Chubut.
FIGURE 1. Locations and pig production. A in Fleas (Insecta: Siphonaptera) with public health relevance in domestic pigs (Artiodactyla: Suidae) from Argentina
FIGURE 1. Locations and pig production. A) Geographical locations of the studied farms: 1—Mariano Benítez (33°42'43"S; 60°35'16"W), 2—Ayerza (33°50'17"S; 60°34'48"W), 3—Fontezuela (33°57'37"S; 60°28'34"W), 4—Pinzon (33°59'22"S; 60°45'21"W), 5—Junín (34°34'10"S 60°57'35"W), 6—General Viamonte (34°56′00″S; 61°10′00″W), and 7—Azul (36°45'03.3"S; 59°53'38.8"W). B) Illustrative images of extensive production system "to field", in farms from Buenos Aires Province.
Data publication: Simulation of macroscopic boundary value problems using phenomenological material model for steel fiber reinforced high performance concrete (HPC)
<p>This data set contains all necessary inputs for the Simulation of macroscopic boundary value problems using phenomenological material model, including boundary conditions, material parameters and numerical results. The discretization is realized in terms of the finite element method. </p>
Public data on WIT's 18 years impact survey
<p>Dataset (answers and codebooks) related to research on the impact that wrote the history of <strong>WIT during 18 years</strong>. The artifacts were used for the <strong>quantitative and qualitative analyses</strong>.</p>
Dataset I related to publication: Beyond KRAS(G12C): biochemical and computational characterization of sotorasib and adagrasib binding specificity and the critical role of H95 and Y96
<p>MD simulation data (sotorasib and adagrasib in complex with NRAS(WT) and KRAS(WT)) related to publication: "Beyond KRAS(G12C): biochemical and computational characterization of sotorasib and adagrasib binding specificity and the critical role of H95 and Y96". </p> <p>ACS Chem. Biol. 2024, XXXX, XXX, XXX-XXX</p> <p>https://pubs.acs.org/doi/10.1021/acschembio.4c00315</p> <ul> <li>The .zip files contain raw Desmond simulation trajectories of KRAS(WT) or NRAS(WT) in complex with adagrasib or sotorasib [5 replicas; each 5 us] <ul> <li>(-out.cms files and trajectories).</li> </ul> </li> </ul> <p>Related datasets: 10.5281/zenodo.10781452</p>
Dataset II related to publication: Beyond KRAS(G12C): biochemical and computational characterization of sotorasib and adagrasib binding specificity and the critical role of H95 and Y96
<p>MD simulation data (KRAS(G12C) and KRAS(G12C/Y96D)) related to publication: "Beyond KRAS(G12C): biochemical and computational characterization of sotorasib and adagrasib binding specificity and the critical role of H95 and Y96". </p> <p>ACS Chem. Biol. 2024, XXXX, XXX, XXX-XXX</p> <p>https://pubs.acs.org/doi/10.1021/acschembio.4c00315</p> <ul> <li>The .zip files contain raw Desmond simulation trajectories of KRAS(G12C) and KRAS(G12C/Y96D) with apo SII-P or in complex with sotorasib [5 replicas; each 4 us] <ul> <li>(-out.cms files and trajectories).</li> </ul> </li> </ul> <p>Related datasets: 10.5281/zenodo.10812233 </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.