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FIGURE 3. Phylogenetic relationship among keeled back mullets and other Planiliza species inferred from 323 in Planiliza lauvergnii (Eydoux & Souleyet, 1850), a senior synonym of Planiliza affinis (Günther, 1861) with a re-evaluation of keeled back mullets (Mugiliformes Mugilidae)
FIGURE 3. Phylogenetic relationship among keeled back mullets and other Planiliza species inferred from 323 sequences of Cytochrome Oxidase-I using the Maximum Likelihood method based on the TPM2+F+I+G4 substitution model. Bootstrap values are above branches. Tree drawn to scale, with branch lengths equal to evolutionary distances used to infer the phylogenetic tree. The grey box includes representatives of Chelon and Parachelon used as outgroups.
Figure 5 in Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences
Figure 5. Chronogram for major clades of Brachycera estimated by BEAST 1.8.4 based on 107-taxon_PCG_nt12 (scale on x-axis in mya). At the branching nodes, numbers show the estimated divergence times and blue bars represent the time interval for 95% probability of actual node age.
Figure 4 in Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences
Figure 4. The simplified ML tree inferred from the dataset 107-taxon_PCG_aa by using IQ-TREE, under the data partitions and best-fitting models selected by PartitionFinder 2. Node numbers show the bootstrap support values (> 50). The insect pictures are provided by Yuqiang Xi.
Figure 1 in Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences
Figure 1. Representations of previous hypotheses for the relationships among major groups of Brachycera inferred from morphologically-based or molecular studies by authors cited. A, Woodley (1989) based on morphological data; B, Wiegmann et al. (2003) based on morphological and molecular data; C, Yeates (2002) based on morphological data; D, Wiegmann et al. (2011) based on morphological and molecular data; E, Shin et al. (2018) based on molecular data; F, Bayless et al. (2021) based on molecular data.
Figure 3. The Bayesian tree inferred from the dataset 107 in Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences
Figure 3. The Bayesian tree inferred from the dataset 107-taxon_PCG_nt12 using PhyloBayes, under the site-heterogeneous mixture model (CAT-GTR). Node numbers show the posterior probability values (> 0.90). The insect pictures are provided by Yuqiang Xi.
Figure 2 in Phylogenetic relationships of Brachycera (Insecta: Diptera) inferred from mitochondrial genome sequences
Figure 2. The simplified ML tree inferred from the dataset 187-taxon_PCG_nt123 using IQ-TREE, under the data partitions and best-fitting models selected by PartitionFinder 2. Node numbers show the bootstrap support values (> 50). For the full tree, see Supporting Information, Fig. S3A. The insect pictures are provided by Yuqiang Xi.
FIGURE 2. Phylogenetic relationships within the genus Abrodictyum, from a in Abrodictyum inexpectatum, an unexpected new fern species (Hymenophyllaceae, Polypodiidae) for Madagascar, as revealed by an integrative approach
FIGURE 2. Phylogenetic relationships within the genus Abrodictyum, from a BI analysis on rbcL sequences, only in-group is shown. The values on nodes are Posterior Probabilities (PP) superior to 0.90. The pink box shows the Afro-Malagasy clade, all other species are from Asia, Australasia and/or Pacific islands, or from Neotropics (A. rigidum). A. aff. angustimarginatum (in bold) = A. inexpectatum Dubuisson & Rouhan sp. nov.
Supplementary material 1 from: Stoffels BEMW, van der Meij SET, Hoeksema BW, van Alphen J, van Alen T, Meyers-Muñoz MA, de Voogd NJ, Tuti Y, van der Velde G (2016) Phylogenetic relationships within the Phyllidiidae (Opisthobranchia, Nudibranchia). ZooKeys 605: 1-35. https://doi.org/10.3897/zookeys.605.7136
COI sequences of lost Phyllidiidae specimens : Explanation note: COI sequences of Phyllidiidae specimens that dried out after sequencing (numbers and localities are indicated in Table 1.
Supplementary material 3 from: Balakirev A, Abramov A, Rozhnov V (2014) Phylogenetic relationships in the Niviventer-Chiromyscus complex (Rodentia, Muridae) inferred from molecular data, with description of a new species. ZooKeys 451: 109-136. https://doi.org/10.3897/zookeys.451.7210
Cranial measurements, range, and standard deviation: Explanation note: Cranial measurements, including range and standard deviation (SD), for Chiromyscus species from Vietnam (intact, adult skulls of both sexes).
FIGURE 32. Leptalpheus sibo n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 32. Leptalpheus sibo n. sp., paratype male (cl 7.4 mm), ULLZ 18219 [USNM 1705349], from Puerto Sandino, Nicaragua: a, major cheliped, lateral; b, same, chela, lateral; c, second pereopod, lateral; d, third pereopod, lateral; e, fourth pereopod, lateral; f, fifth pereopod, lateral; g, same, propodus and dactylus, lateral; h, second pleopod with appendix masculina and appendix interna, mesial.
FIGURE 27 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 27. Leptalpheus lirai Vera Caripe et al., 2021, ovigerous female (cl 11.3 mm), ULLZ 18233 [USNM 1706499], from Ft. Pierce, Florida, USA: a, habitus, lateral; b, frontal margin, dorsal; c, same, lateral; d, ventromesial carina of first article of antennular peduncle, lateral; e, antennular peduncle, ventral; f, same, first article, dorsal; g, antennal peduncle, dorsal; h, same, ventral; i, mandible, mesial; j, maxillule, lateral.
FIGURE 28 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 28. Leptalpheus lirai Vera Caripe et al., 2021, ovigerous female (cl 11.3 mm), ULLZ 18233 [USNM 1706499] (a–f, i, j), and male (cl 7.8), ULLZ 18234 [USNM 1706500] (g, h), both from Ft. Pierce, Florida, USA: a, maxilla, lateral; b, first maxilliped, lateral; c, second maxilliped, lateral; d, third maxilliped, lateral; e, major cheliped, lateral; f, major chela, lateral; g, same, lateral; h, same, mesial; i, minor cheliped, lateral; j, minor chela, mesial.
FIGURE 25 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 25. Color patterns of Leptalpheus degravei n. sp. and Leptalpheus forceps Williams, 1965. Leptalpheus degravei n. sp.: a, paratype male (cl 3.6 mm), ULLZ 18511 [USNM 1705361], from Bocas del Toro, Panama, dorsal; b, same, lateral; c, holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama, dorsal; d, same, lateral; e, paratype female (cl 3.7 mm), ULLZ 18506 [USNM 1705356], from Bocas del Toro, Panama, dorsal; f, same, lateral; g, paratype ovigerous female (cl 4.7 mm), ULLZ 18512 [USNM 1705362], from Bocas del Toro, Panama, lateral. Leptalpheus forceps: h, ovigerous female (cl 5.9 mm), ULLZ 5818 [USNM 1541154], from Ft. Pierce, Florida, USA, lateral. Photographs by the first author (a–g) and third author (h).
FIGURE 31. Leptalpheus sibo n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 31. Leptalpheus sibo n. sp., paratype male (cl 7.4 mm), ULLZ 18219 [USNM 1705349], from Puerto Sandino, Nicaragua: a, frontal margin, dorsal; b, same, lateral; c, telson, dorsal; d, ventromesial carina of first article of antennular peduncle, lateral; e, mandible, mesial; f, maxillule, lateral; g, maxilla, lateral; h, first maxilliped, lateral; i, second maxilliped, lateral; j, third maxilliped, lateral; k, uropod, dorsal.
FIGURE 26 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 26. Color patterns of Leptalpheus felderi Anker, Vera Caripe & Lira, 2006 from Virginia, USA: a, male (cl 8.5 mm), UF 48038, from Wachaprague, dorsal; b, same, lateral; c, female (cl 8.0 mm) USNM 1499342, from Bradford Bay, dorsal; d, same, lateral. Photographs by Amanda Bemis.
FIGURE 24. Leptalpheus degravei n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 24. Leptalpheus degravei n. sp., holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama: a, major cheliped, dorsolateral; b, same, ventromesial, c, same, dactylus and pollex, lateral; d, same, fingers opened, mesial.
FIGURE 23. Leptalpheus degravei n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 23. Leptalpheus degravei n. sp., holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama: a, minor cheliped, ventrolateral; same, chela, ventrolateral; c, second pereopod, lateral; d, third pereopod, lateral; e, fourth pereopod, lateral; f, fifth pereopod, lateral.
FIGURE 22. Leptalpheus degravei n in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 22. Leptalpheus degravei n. sp., holotype male (cl 5.1 mm), ULLZ 18510 [USNM 1705360], from Bocas del Toro, Panama: a, frontal margin, dorsal; b, same, lateral; c, ventromesial carina of first antennular article, lateral; d, telson, dorsal; e, mandible, mesial; f, maxillule, mesial; g, maxilla, lateral; h, first maxilliped, lateral; i, second maxilliped, lateral; j, third maxilliped, lateral; k, second pleopod with appendix interna and appendix masculina, mesial; l, uropod, dorsal.
FIGURE 21. Leptalpheus azuero Anker, 2011 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 21. Leptalpheus azuero Anker, 2011 (a–e), Leptalpheus felderi Anker, Vera Caripe & Lira, 2006 (f–h), and Leptalpheus forceps Williams, 1965 (i–k). Leptalpheus azuero: ovigerous female (cl 4.7 mm), ULLZ 11823 [USNM 1545912], from Las Peñitas, Nicaragua (a, b) and ovigerous female (cl 6.4 mm), ULLZ 5917 [USNM 1541195], from Estero Aserradores, Nicaragua (c–e): a, major chela, lateral; b, same, mesial; c, major chela, dorsolateral; d, same, dactylus and pollex, dorsolateral; e, same, fingers opened, lateral. Leptalpheus felderi: male (cl 8.5 mm), UF 48038, from Wachapreague, Virginia, USA: f, major chela, mesial; g, same, dorsolateral; h, same, dactylus and pollex, dorsolateral. Leptalpheus forceps: male (cl 8.8 mm) (i), female (cl 5.3 mm) (j), ULLZ 18053 [USNM 1706385], from Bay St. Louis, Mississippi, USA and female (cl 6.0 mm) (k), ULLZ 5593 [USNM 1541048], from Nuevo Campechito, Mexico: i, frontal margin, dorsal; j, same; k, uropod with caudal appendix, dorsal.
FIGURE 20 in New species and records of the symbiotic shrimp genus Leptalpheus Williams, 1965, with notes on Fenneralpheus Felder & Manning, 1986, and preliminary molecular analysis of phylogenetic relationships (Crustacea: Decapoda: Alpheidae)
FIGURE 20. Color patterns of the Leptalpheus axianassae species group. Leptalpheus hendrickxi Anker, 2011: a, male (cl 7.7 mm), ULLZ 5810 [USNM 1541151], from Paso Caballos, Nicaragua, lateral; b, female (cl 9.4 mm), ULLZ 6036 [USNM 1541281], from Las Peñitas, Nicaragua, lateral. Leptalpheus corderoae Salgado-Barragán et al., 2014: c, female (cl 8.3 mm), ULLZ 18237 [USNM 1706503], from Las Peñitas, Nicaragua, lateral. Leptalpheus axianassae Dworschak & Coelho, 1999: d, ovigerous female (cl 8.4 mm), ULLZ 18173 [USNM 1706443], from Ft. Pierce, Florida, USA, lateral; e, male (cl 7.3 mm), ULLZ 18173 [USNM 1706443], from Ft. Pierce, Florida, USA, lateral; f, male (cl 7.1 mm), UF 51713, from Bocas del Toro, Panama, lateral; g, same, dorsal; h, same, close-up of major chela, lateral. Photographs by the third author (a–e) and Paulo P.G. Pachelle (f–h).
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.