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FIGURES 81–84. Male genitalia, vesicae. 81–82 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
FIGURES 81–84. Male genitalia, vesicae. 81–82 R. magas, Costa Rica, USNMENT01493483, 04-SRNP-27241, Slide USNM148574. 83–84 R. richardashleyi, Costa Rica, USNMENT01493187, 04-SRNP-42900, Slide USNM148578
FIGURES 73–80. Male genitalia, vesicae. 73–74 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
FIGURES 73–80. Male genitalia, vesicae. 73–74 R. ritaashleyae, Costa Rica, USNMENT01493231, 03-SRNP-11914, Slide USNM148597. 75–76 R. splendida, Syntype, Costa Rica, USNMENT00973707, Slide USNM148598. 77–78 Narcaea atrax (=Rejectaria atrax), Ecuador, Holotype, USNMENT00973692, Slide USNM148640. 79–80 R. paratrax, Panama, USNMENT01756002, Slide USNM148595
FIGURES 65–72. Male Genitalia, vesicae. 65–66 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
FIGURES 65–72. Male Genitalia, vesicae. 65–66 R._villosa, Panama, USNMENT01422998, Slide USNM148665. 67–68 R._villosa, Venezuela, USNMENT01422978, Slide USNM148658. 69–70 R._villosa, Bolivia, USNMENT01756824, Slide USNM148669CMNH. 71–72 R._villosa, Bolivia, USNMENT01422993, Slide USNM148666
FIGURES 57–64. Male Genitalia, vesicae. 57–58 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
FIGURES 57–64. Male Genitalia, vesicae. 57–58 R._villosa, Costa Rica, USNMENT01493304, 13-SRNP-45393, Slide USNM148507. 59–60 R. sp. nr. villosa, Costa Rica, USNMENT01493015, 02-SRNP-6046, Slide USNM148569. 61–62 R. villavicencia, Costa Rica, USNMENT01493395, 06-SRNP-6834, Slide USNM148571. 63–64 R. villavicencia, Holotype, Colombia, USNMENT00973787, Slide USNM148642
FIGURES 43–50. Male genitalia, valvae. 43 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
FIGURES 43–50. Male genitalia, valvae. 43 R. villosa, Costa Rica, USNMENT01493304, 13-SRNP-45393, Slide USNM148507. 44 R. sp. nr. villosa, USNMENT01493015, 02-SRNP-6046, Slide USNM148569. 45 R. villosa, Panama, USNMENT01422998, Slide USNM148665. 46 R. villosa, Venezuela, USNMENT01422978, Slide USNM148658. 47 R. villosa, Bolivia, USNMENT01756824, Slide 148669CMNH. 48 R. villosa, Colombia, USNMENT01422993, Slide USNM148666. 49 R. villavicencia, Costa Rica, USNMENT01493395, 06-SRNP-6834, Slide USNM148571. 50 R. villavicencia, Holotype, Colombia, USNMENT00973787, Slide USNM148642
FIGURES 51–56. Male genitalia, valvae. 51 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
FIGURES 51–56. Male genitalia, valvae. 51 R. ritaashleyae, Costa Rica, USNMENT01493231, Slide USNM148597. 52 R. paratrax, Panama, USNMENT01756002, Slide USNM148595. 53 R. splendida, Syntype, Costa Rica, USNMENT00973707, Slide USNM148598. 54 Narcaea atrax (=Rejectaria atrax), Holotype, Ecuador, USNMENT00973692, Slide USNM148640. 55 R. magas, Costa Rica, USNMENT01493483, 04-SRNP-27241, Slide USNM148574. 56 R. richardashleyi, Costa Rica, USNMENT01493187, 04-SRNP-42900, Slide USNM148578
Figures 85–92. Female genitalia. 85 R in New species in Rejectaria Guenée (Lepidoptera: Erebidae: Herminiinae) with a focus on the Cyclanthaceae-feeders
Figures 85–92. Female genitalia. 85 R. sp. nr. villosa, Costa Rica USNMENT01493030, 07-SRNP-40317, Slide USNM148567. 86 R. villosa, Costa Rica, USNMENT01493406, 13-SRNP-45392, Slide USNM148566. 87 R. villosa, Costa Rica, USNMENT01493406, 13-SRNP-45392, Slide USNM148566. 88 R. villavicencia, Costa Rica USNMENT01493478, 03- SRNP-37825, Slide USNM148572. 89 R. ritaashleyae, Costa Rica USNMENT01493100, 05-SRNP-6177, Slide USNM148568. 90 R. ritaashleyae, Costa Rica USNMENT01493221, 09-SRNP-32560, Slide. 91 R. splendida, Syntype, Costa Rica, USNMENT01756004, Slide USNM148641. 92 R. paratrax, French Guiana USNMENT01422780, Slide USNM148596
FIGURE 4. Gonolobus caamalii Carnevali & R. Duno. A in Twice lost, twice found: A new species of Gonolobus (Apocynaceae: Asclepiadoideae) with a reappraisal of the genus in the Yucatan Peninsula Biotic Province
FIGURE 4. Gonolobus caamalii Carnevali & R. Duno. A. Frontal view of the flower in anthesis. B. Posterior view of the flower featuring the reflexed calyx. C. Close up of the center of the flower with the gynostemium. Note the dark rim of the gynostemium head, the dark wine color of the anther appendages and the margins of the bright yellow green corona. Also, note the line of trichomes along the right margin of each corolla lobe as well as the reddish-brown band around the corona at the base of the corolla lobes. D. ¾ view of the center of the flower featuring the corona lobes. E. Flowering plant at the type locality. All based upon the type collection (G. Carnevali, R. Duno & M.A. Caamal Dzul 8573, CICY, GH, MEXU, MO).
FIGURE 5. Gonolobus caamalii Carnevali & R. Duno. A in Twice lost, twice found: A new species of Gonolobus (Apocynaceae: Asclepiadoideae) with a reappraisal of the genus in the Yucatan Peninsula Biotic Province
FIGURE 5. Gonolobus caamalii Carnevali & R. Duno. A. Habit of a flowering plant with flower buds. B. Frontal view of the flower. C. Abaxial view of the corolla, calyx removed. D. Abaxial view of the calyx. E. Abaxial view of the calix. F. Gynostemium detached from the corolla. G. Abaxial view of the corona, with sectioned bilocular ovary. H. Corona, adaxial view. I–J. Abaxial (I) and adaxial (J) views of detached anthers, without appendages. K. Pollinarium, upside down. Based upon G. Carnevali 8579 (CICY, spirits).
FIGURES 3A–E in First records of three genera, Cyphomella Saether, 1977, Olecryptotendipes Zorina, 2007 and Robackia Saether, 1977 of the Harnischia complex from India with description of O. extentus sp. n., O. obtunsus sp. n. and R. aequilongia sp. n. (Diptera: Chironomidae)
FIGURES 3A–E. Adult male Olecryptotendipes obtunsus sp. n. A. Wing, B. Hypopygium, C. Hypopygium, scale 0.01 mm, D. Superior volsella, scale 0.01 mm, E. Superior volsella, scale 0.01 mm.
FIGURES 2A–D in First records of three genera, Cyphomella Saether, 1977, Olecryptotendipes Zorina, 2007 and Robackia Saether, 1977 of the Harnischia complex from India with description of O. extentus sp. n., O. obtunsus sp. n. and R. aequilongia sp. n. (Diptera: Chironomidae)
FIGURES 2A–D. Adult male Olecryptotendipes extentus sp. n. A. Wing, B. Hypopygium, C. Hypopygium, scale 0.01 mm, D. Superior volsella, scale 0.01 mm.
FIGURES 1A–E in First records of three genera, Cyphomella Saether, 1977, Olecryptotendipes Zorina, 2007 and Robackia Saether, 1977 of the Harnischia complex from India with description of O. extentus sp. n., O. obtunsus sp. n. and R. aequilongia sp. n. (Diptera: Chironomidae)
FIGURES 1A–E. Adult male Robackia aequilongia sp. n. A. Wing, B. Hypopygium (dorsal), C. Hypopygium (ventral), D. Superior volsella, scale 0.01 mm, E. Hypopygium, scale 0.01 mm.
FIGURES 4A–D. Adult male Cyphomella camelus. A. Wing, B in First records of three genera, Cyphomella Saether, 1977, Olecryptotendipes Zorina, 2007 and Robackia Saether, 1977 of the Harnischia complex from India with description of O. extentus sp. n., O. obtunsus sp. n. and R. aequilongia sp. n. (Diptera: Chironomidae)
FIGURES 4A–D. Adult male Cyphomella camelus. A. Wing, B. Hypopygium (dorsal), C. Hypopygium, scale 0.01 mm, D. Hypopygium (ventral).
FIGURE. Flower characteristics comparison of A. P. charlesworthii var. lannaense, B. P. papilio-laoticus (photo. by W. Tongkham) and C. P. Little Trouble (P. charlesworthii x P. barbigerum) (photo. by R. Hella) in Paphiopedilum charlesworthii var. lannaense, a new slipper orchid from Northern Thailand identified by morphological and AFLP analyses
FIGURE. Flower characteristics comparison of A. P. charlesworthii var. lannaense, B. P. papilio-laoticus (photo. by W. Tongkham) and C. P. Little Trouble (P. charlesworthii x P. barbigerum) (photo. by R. Hella)
Colour illustrations. Flowers, fruits, leaves and seeds of Musa itinerans (background photo by D.T. Vu); from top to bottom and left to right: colony on PDA after 14 d at 24 °C in darkness (left = obverse,right = reverse), sporodochia formed on CLA, aerial conidiophore, aerial conidiogenous cells, aerial conidia, sporodochial conidia. Scale bars: black = 20 µm, white = 10 µm. in Fusarium chuoi R. Hill, Gaya, D.T. Vu, Sand.-Den. & Crous, R. Hill, Gaya, D.T. Vu, Sand.-Den. & Crous sp. nov.
Colour illustrations. Flowers, fruits, leaves and seeds of Musa itinerans (background photo by D.T. Vu); from top to bottom and left to right: colony on PDA after 14 d at 24 °C in darkness (left = obverse,right = reverse), sporodochia formed on CLA, aerial conidiophore, aerial conidiogenous cells, aerial conidia, sporodochial conidia. Scale bars: black = 20 µm, white = 10 µm.
Generalizable EHR-R-REDCap pipeline for a national multi-institutional rare tumor patient registry
<p><strong>Objective</strong>: To develop a clinical informatics pipeline designed to capture large-scale structured EHR data for a national patient registry.</p> <p><strong>Materials and Methods</strong>: The EHR-R-REDCap pipeline is implemented using R-statistical software to remap and import structured EHR data into the REDCap-based multi-institutional Merkel Cell Carcinoma (MCC) Patient Registry using an adaptable data dictionary.</p> <p><strong>Results</strong>: Clinical laboratory data were extracted from EPIC Clarity across several participating institutions. Labs were transformed, remapped and imported into the MCC registry using the EHR labs abstraction (eLAB) pipeline. Forty-nine clinical tests encompassing 482,450 results were imported into the registry for 1,109 enrolled MCC patients. Data-quality assessment revealed highly accurate, valid labs. Univariate modeling was performed for labs at baseline on overall survival (N=176) using this clinical informatics pipeline.</p> <p><strong>Conclusion</strong>: We demonstrate feasibility of the facile eLAB workflow. EHR data is successfully transformed, and bulk-loaded/imported into a REDCap-based national registry to execute real-world data analysis and interoperability.</p>
FIGURE. Mucuna pruriens (L.) DC. var. hirsuta (Wight & Arn.) Wilmot-Dear. A. Holotype of M. pruriens (L.) DC. var. hirsuta (Wight & Arn.) Wilmot-Dear (R. Wight 750, K000797547, © Royal Botanic Gardens, Kew). B. Isotype of M. pruriens (L.) DC. var. hirsuta (Wight & Arn.) Wilmot-Dear (R. Wight 750, E00174529, © Royal Botanic Garden, Edinburgh). C. Holotype of M. incurvata Wilmot-Dear & R. Sa (C. W. Wang 79571, PE00414137, © Institute of Botany, Chinese Academy of Sciences). D. Isotype of M. incurvata Wilmot-Dear & R. Sa (C. W. Wang 79571, A00195002, © Harvard University). E. S. Mokim s. n. (L4306572) from Kachin Hills, Myanmar [Upper Burma], © Naturalis Biodiversity Center. F. China-Vietnam Joint Exped. 1441 (PE00416831) from Vietnam, © Institute of Botany, Chinese Academy of Sciences. G. X. X. Guo 1401 (CSH0142751) from Jinghong, Yunnan, China, © Shanghai Chenshan Herbarium. H. K. W. Jiang SSPN13 (CSH0160977) from Mengla, Yunnan, China, © Shanghai Chenshan Herbarium. I. K. M. Feng 5399 (KUN0618388) from Hekou, Yunnan, China, © Kunming Institute of Botany, CAS. in Legume additions to the flora of China
FIGURE. Mucuna pruriens (L.) DC. var. hirsuta (Wight & Arn.) Wilmot-Dear. A. Holotype of M. pruriens (L.) DC. var. hirsuta (Wight & Arn.) Wilmot-Dear (R. Wight 750, K000797547, © Royal Botanic Gardens, Kew). B. Isotype of M. pruriens (L.) DC. var. hirsuta (Wight & Arn.) Wilmot-Dear (R. Wight 750, E00174529, © Royal Botanic Garden, Edinburgh). C. Holotype of M. incurvata Wilmot-Dear & R. Sa (C. W. Wang 79571, PE00414137, © Institute of Botany, Chinese Academy of Sciences). D. Isotype of M. incurvata Wilmot-Dear & R. Sa (C. W. Wang 79571, A00195002, © Harvard University). E. S. Mokim s. n. (L4306572) from Kachin Hills, Myanmar [Upper Burma], © Naturalis Biodiversity Center. F. China-Vietnam Joint Exped. 1441 (PE00416831) from Vietnam, © Institute of Botany, Chinese Academy of Sciences. G. X. X. Guo 1401 (CSH0142751) from Jinghong, Yunnan, China, © Shanghai Chenshan Herbarium. H. K. W. Jiang SSPN13 (CSH0160977) from Mengla, Yunnan, China, © Shanghai Chenshan Herbarium. I. K. M. Feng 5399 (KUN0618388) from Hekou, Yunnan, China, © Kunming Institute of Botany, CAS.
FIGURES 82a–r in The lace-sheet-weavers—a long story (Araneae: Psechridae: Psechrus)
FIGURES 82a–r. Psechrus spp., photos of carapace (a–g), sternum (h–k) and ventral view of coxae of legs I–II (l-r). a P. libelti. b P. khammouan. c P. kenting. d P. fuscai sp. nov. e P. ghecuanus. f P. elachys sp. nov. g, k P. tauricornis sp. nov. h, o P. antraeus. i P. annulatus. j, p P. hartmanni sp. nov., l P. himalayanus, m P. ancoralis, n P.mulu, q P. senoculatus, r P. marsyandi. a ♀ SB 969 from Brunei Darussalam. b ♀ SB 382 from Laos, Khammouan Prov. c ♀ holotype SB 615 from Taiwan, Pingtung County. d ♀ holotype SB 954 from China, Yunnan Prov. e s.a. ♀ syntype SB 222 from Myanmar, Kayin Prov. f ♀ holotype SB 861 from Thailand, Satun Prov. g ♀ paratype SB 849, k juv. SB 851, both from Sri Lanka, Central Prov. h ♀ holotype SB 8 from Laos, Vientiane Prov. i ♀ paralectotype SB 830 from Indonesia, Jawa Barat Prov. j ♀ SB 630 from Sri Lanka. l ♂ lectotype SB 14 from India, Uttarakhand Prov. m ♂ paratype SB 26 from Laos, Luang Nam Tha Prov. n ♂ paratype SB 241 from Malaysia, Borneo, Sarawak Prov. o ♂ paratype SB 7 from Laos, Vientiane Prov. p ♂ SB 624 from Sri Lanka. q ♂ paratype SB 537 from China, Hunan Prov. r ♂ holotype from Nepal, Gandaki Prov.
Datasets and R scripts for Chiara et al 2022
<p>Datasets and R scripts for the analysis, simulations and plots used in Chiara, Arrufat & Jeanson (2022). <em>A variable refractory period increases collective performance in noisy environments.</em> </p> <p> </p>
Lemna minor annotation R package (org.Lminor.eg.db) and corresponding files behind the custom built
<p>This public repository containing the following files:</p> <ol> <li>Custom built annotation R package for the <em>Lemna minor </em>reference genome [<a href="https://zenodo.org/api/files/33f1633e-9232-4a1c-af07-5bcf19db9304/org.Lminor.eg.db.7z?versionId=c0a06176-0e46-4732-87ae-c6d9f9c68d0c">org.Lminor.eg.db.7z</a>]. The package was built via AnnotationForge using sequence homology of protein coding genes for functional characterisation (Description, PFAMs, GO terms). A combined approach using <a href="https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download">blastx </a>and <a href="http://eggnog5.embl.de/#/app/home">EMBL's eggNOG mapper</a> was used for this task. This package is compatible with <a href="https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html">clusterProfiler</a> for downstream functional enrichment analysis (ORA / GSEA) of <em>L. minor</em> transcriptomic / proteomic data.<br> <br> For <strong>how to install and use this package</strong> in your R session,<strong> check the R code example below</strong>.<br> </li> <li>Reference genome, genome annotation (gtf), gene coding sequences (cds) and cds translated peptide sequences (cds.pep) of the duckweed <em>Lemna minor </em>[<a href="https://zenodo.org/api/files/33f1633e-9232-4a1c-af07-5bcf19db9304/Lminor_refGenome_GTF_CDS.7z?versionId=c25b53a8-1fc3-4bfb-b559-718ab8b230a9">Lminor_refGenome_GTF_CDS.7z</a>].<br> The reference genome assembly fasta was downloaded from <a href="http://www.lemna.org">www.lemna.org</a>. Matching GTF annotation file was generated via '<em>gffread</em>', from the GFF<em> </em>annotation file available <a href="https://genomevolution.org/coge/LoadGenome.pl?wid=47218">here</a>.<br> </li> <li>With the cds translated peptide file, a blastp search was performed against a custom plant protein sequence database [<a href="https://zenodo.org/api/files/33f1633e-9232-4a1c-af07-5bcf19db9304/Lminor_ref.org.Db4blastp.7z?versionId=d1e69820-edfc-494d-9d44-f6624b190841">Lminor_ref.org.Db4blastp.7z</a>]. The custom database was built from the proteomes of well annotated reference plant species. (For details refer to the readme file within the compressed folder)</li> </ol> <p>For more details please refer to our publication in <a href="https://doi.org/10.1021/acs.est.2c01777">Environmental Science & Technology</a>:<br> Loll, Alexandra, Hannes Reinwald, Steve U. Ayobahan, Bernd Göckener, Gabriela Salinas, Christoph Schäfers, Karsten Schlich, Gerd Hamscher, and Sebastian Eilebrecht. <em><strong>“Short-Term Test for Toxicogenomic Analysis of Ecotoxic Modes of Action in Lemna Minor.”</strong></em> Environmental Science & Technology 56, no. 16 (August 16, 2022): 11504–15.<br> DOI: <a href="https://doi.org/10.1021/acs.est.2c01777">https://doi.org/10.1021/acs.est.2c01777</a></p> <pre><code class="language-bash"># 1. Download and unzip (7zip format) the org.Lminor.eg.db package. # 2. Install the package via: orgDb = "path/to/org.Lminor.eg.db/" install.packages(orgDb, type="source", repos=NULL) # 3. Restart R session then load package require(org.Lminor.eg.db) require(AnnotationDbi) # to check for columns and keytypes: columns(org.Lminor.eg.db) keytypes(org.Lminor.eg.db) # query the org.Lminor.eg.db for particular Lemna gene IDs (GID) gid = keys(org.Lminor.eg.db, keytype="GID") col = columns(org.Lminor.eg.db)[c(5,17,9,15,1,8,14)] df = select(org.Lminor.eg.db, keys=gid[1000:1100], columns=col, keytype="GID") View(df) ### Running overrepresenation analysis in clusterProfiler using the Lminor annotation package ### # ORA for multiple gene sets via compareCluster() require(clusterProfiler) genLs = list(setA = gid[1:40], setB = gid[100:140], setC = gid[1000:1040]) res = compareCluster(genLs, fun = "enrichGO", OrgDb = "org.Lminor.eg.db", keyType = "GID", ont = "BP", universe = gid) # Compute semantic similiarities among GO terms: d = GOSemSim::godata('org.Lminor.eg.db', ont="BP", computeIC=FALSE, keytype = "GID") res = enrichplot::pairwise_termsim(res, method = "Wang", semData = d) # Rmv GO terms with redudant biological information resS = simplify(res, .8) # resort results after pvalues resS@compareClusterResult = resS@compareClusterResult[order(resS@compareClusterResult$pvalue),] View(res@compareClusterResult) # Network plot emapplot(resS, showCategory = 30)</code></pre>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.