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3,878 results for “Molecular Data”
FIGURE 30. Trimeresurus brongersmai. Holotype, RMNH 5654A in A revision of the Trimeresurus puniceus-complex (Serpentes: Viperidae: Crotalinae) based on morphological and molecular data
FIGURE 30. Trimeresurus brongersmai. Holotype, RMNH 5654A. Left side of the head. Photograph by Roger Bour.
FIGURE 23. Trimeresurus andalasensis. Holotype, SMF 22429 in A revision of the Trimeresurus puniceus-complex (Serpentes: Viperidae: Crotalinae) based on morphological and molecular data
FIGURE 23. Trimeresurus andalasensis. Holotype, SMF 22429. General view. Photograph by Gernot Vogel.
FIGURE 27. Trimeresurus andalasensis. Specimen ZMB 29641 in A revision of the Trimeresurus puniceus-complex (Serpentes: Viperidae: Crotalinae) based on morphological and molecular data
FIGURE 27. Trimeresurus andalasensis. Specimen ZMB 29641. Right side of the head. Drawing by Petr Kliment
FIGURE 3 in Taxonomic reexamination of Portulaca okinawensis (Portulacaceae) in the Ryukyu Archipelago of Japan based on molecular and morphological data
FIGURE 3. Flowering plants of Portulaca okinawensis from the Ryukyus. A. Amami Island (AM1). B. Amami Island (AM3). C. Tokuno-shima Island. D. Okinawa Island (OK1). E. Okinawa Island (OK2). F. Okinawa Island (OK4). G. Tonaki Island (TK). H. Aka Island (AK). Scale bar in H also applies to A–G, and indicates 5 mm (see the Table 1 for the localities abbreviations).
FIGURE 2. Bayesian phylogenetic tree for 60 in Taxonomic reexamination of Portulaca okinawensis (Portulacaceae) in the Ryukyu Archipelago of Japan based on molecular and morphological data
FIGURE 2. Bayesian phylogenetic tree for 60 OTUs of Portulaca with three outgroups based on internal transcribed spacer (ITS) sequence. The topology of the maximum parsimony (MP) strict consensus tree was highly compatible with the Bayesian tree. Bayesian posterior probabilities (left) and bootstrap percentages in the MP analysis (right) are shown [see the Table 1 for the localities collection of the four ITS types (A–D) of P. okinawensis].
FIGURE 1 in Taxonomic reexamination of Portulaca okinawensis (Portulacaceae) in the Ryukyu Archipelago of Japan based on molecular and morphological data
FIGURE 1. Map of the Ryukyus showing 12 localities on six islands of Portulaca okinawensis and four localities of P. psammotropha in Taiwan. Broken lines circle the islands of the Amami Islands and the Okinawa Islands (see Table 1 for abbreviations for collection localities).
FIGURE 5 in New combinations in Asiatic Oxybasis (Amaranthaceae s.l.): evidence from morphological, carpological and molecular data
FIGURE 5. ML phylogenetic tree of ITS1 nucleotide sequences from Oxybasis sp., Chenopodiastrum murale, C. hybridum and C. coronopus. Bootstrap consensus tree built by Maximum Likelihood method. Bootstrap values higher than 70% are shown.
FIGURE 2 in New combinations in Asiatic Oxybasis (Amaranthaceae s.l.): evidence from morphological, carpological and molecular data
FIGURE 2. The distribution of Oxybasis micrantha (dots) based on the specimens seen, and O. gubanovii (triangles) based on Sukhorukov (1999, 2002) as well as additional Chinese specimens seen.
FIGURE 4. Parsimony cladogram inferred from ITS1 in New combinations in Asiatic Oxybasis (Amaranthaceae s.l.): evidence from morphological, carpological and molecular data
FIGURE 4. Parsimony cladogram inferred from ITS1 nucleotide sequences from Oxybasis sp., Chenopodiastrum murale, C. hybridum and C. coronopus. Bootstrap consensus tree built by Maximum Parsimony method. Bootstrap values higher than 70% are shown. The tree was rooted with Polygonum aviculare.
FIGURE 3. A–C in New combinations in Asiatic Oxybasis (Amaranthaceae s.l.): evidence from morphological, carpological and molecular data
FIGURE 3. A–C: Pericarp surface under SEM after soaking and critical point drying. D–H: Seedcoat ultrasculpture. A: Oxybasis rubra (Russia, Tula, no date, Tsinger & Kozhevnikov 613; MW); B: O. micrantha (China, Peiping, Prince Park, 1934, Kung 3771; PE- 00540057); C: O. gubanovii (Mongolia, Altai, vallis fl. Bulgan, 12 August 1982, Gubanov 5577; MW); D: O. rubra (Russia, Tula, no date, Tsinger & Kozhevnikov 613; MW); E: O. micrantha (China, Jinghe, Tuotuo, 31 August 1957, Guan 4782 (XJBI-00005764); F– G: O. gubanovii (Mongolia, Altay, August 2002, Ebel & Rudaya, no voucher); H: O. urbica (Russia, Kalmykia, Chernozemelsk distr., October 1996, Neronov s.n.; MW).
FIGURE 2 in Taxonomic status of Euzonitis haroldi (Heyden, 1870) (Coleoptera: Meloidae) inferred from morphological and molecular data
FIGURE 2. Elytral patterns in Euzonitis quadrimaculata. Pattern B corresponds to E. haroldi phenotype. Frequency of each pattern in the Iberian Peninsula (n = 195): a: 0 %; b: 7.7 %; c: 0.5 %; d: 1.5 %; e: 62.6 %; f: 0.5 %; g: 0.5%; h: 3.1 %; i: 7.7 %; j: 7.7 %; k: 3.1 %; l: 5.1 %. Frequency of each pattern in Morocco (n = 22): a: 86.4 %; e: 9.1 %; l: 4.5 %.
FIGURE 1 in Taxonomic status of Euzonitis haroldi (Heyden, 1870) (Coleoptera: Meloidae) inferred from morphological and molecular data
FIGURE 1. Habitus of Euzonitis quadrimaculata (Torrelaguna, Madrid, Spain). a: E. haroldi phenotype. b: Typical phenotype.
FIGURE 3 in Taxonomic status of Euzonitis haroldi (Heyden, 1870) (Coleoptera: Meloidae) inferred from morphological and molecular data
FIGURE 3. Male genitalia of E. quadrimaculata (Torrelaguna, Madrid, Spain): a: tegmen, lateral view; b: tegmen, dorsal view; c: tegmen, ventral view; d: median lobe, lateral view; e: median lobe, ventral view; f: median lobe, dorsal view. Scale bar = 0.5 mm (J. L. Ruiz del.).
Data from: Molecular detection of invertebrate prey in vertebrate diets: trophic ecology of Caribbean island lizards
Understanding community assembly and population dynamics frequently requires detailed knowledge of food web structure. For many consumers, obtaining precise information about diet composition has traditionally required sacrificing animals or other highly invasive procedures, generating tension between maintaining intact study populations and knowing what they eat. We developed 16S mitochondrial DNA sequencing methods to identify arthropods in the diets of generalist vertebrate predators without requiring a blocking primer. We demonstrate the utility of these methods for a common Caribbean lizard that has been intensively studied in the context of small island food webs: Anolis sagrei (a semi-arboreal 'trunk-ground' anole ecomorph). Novel PCR primers were identified in silico and tested in vitro. Illumina sequencing successfully characterized the arthropod component of 168 faecal DNA samples collected during three field trips spanning 12 months, revealing 217 molecular operational taxonomic units (mOTUs) from at least nine arthropod orders (including Araneae, Blattodea, Coleoptera, Hemiptera, Hymenoptera, Isoptera, Lepidoptera and Orthoptera). Three mOTUs (one beetle, one cockroach and one ant) were particularly frequent, occurring in ≥50% of samples, but the majority of mOTUs were infrequent (180, or 83%, occurred in ≤5% of samples). Species accumulation curves showed that dietary richness and composition were similar between size-dimorphic sexes; however, female lizards had greater per-sample dietary richness than males. Overall diet composition (but not richness) was significantly different across seasons, and we found more pronounced interindividual variation in December than in May. These methods will be generally useful in characterizing the diets of diverse insectivorous vertebrates.
Data set of the article "Comparative analysis of the unbinding pathways of antiviral drug Indinavir from HIV and HTLV1 proteases by supervised molecular dynamics simulation"
<p>Data set of the article "Comparative analysis of the unbinding pathways of antiviral drug Indinavir from HIV and HTLV1 proteases by supervised molecular dynamics simulation"</p>
FIGURE 2 in Akodon cursor Winge, 1887 (Rodentia: Sigmodontinae): one or two species? New evidences based on molecular data
FIGURE 2. Phylogenetic relationships observed among specimens of Akodon (2n=14, 15 and 16) and outgroups included in the analyses. Consensus tree of 164 most parsimonious trees, with a score of 104 steps. Fifteen variable characters are parsimony uninformative, and 52 variable characters are parsimony informative. Numbers above branches represent bootstrap support, whereas numbers below branches represent the number of steps necessary to collapse a node (decay index). Akodon serrensis and Thaptomys nigrita were used as outgroup. Uppercase letters are abbreviation for states in Brazil: BA=Bahia, ES= Espírito Santo, PR = Paraná, PE=Pernambuco, RS = Rio Grande do Sul, and SP= São Paulo. Haplotype numbering followed Table 1.
FIGURE 1 in Akodon cursor Winge, 1887 (Rodentia: Sigmodontinae): one or two species? New evidences based on molecular data
FIGURE 1. Localities of Akodon (2n=14, 15 and 16) used in PCR-RFLP studies. See Appendix for details of sample localities.
FIGURE 3 in Akodon cursor Winge, 1887 (Rodentia: Sigmodontinae): one or two species? New evidences based on molecular data
FIGURE 3. Median-joining network depicting the phylogenetic relationships among, and geographical assignment of all Akodon cursor mtDNA haplotypes based on cytochrome b PCR-RFLP: yellow São Paulo; red, Espírito Santo; blue, Pernambuco and green Bahia. The size of each circle is proportional to relative abundance of each haplotype and branch length is proportional to number of substitutions. Haplotype numbering followed Table 1.
FIGURE 2 in Dianthus pseudocrinitus (Caryophyllaceae), a new species from Northeast of Iran identified by morphological and molecular data
FIGURE 2: Ordination diagram of multidimensional scaling of 27 morphological characters comprising 5, 7, and 5 specimens of Dianthus crinitus subsp. turcomanicus, D. orientalis subsp. stenocalyx, and D. pseudocrinitus, respectively from NE of Iran. The first and second axes accounted for 98.4% of total variation.
FIGURE 3 in Dianthus pseudocrinitus (Caryophyllaceae), a new species from Northeast of Iran identified by morphological and molecular data
FIGURE 3: Phylogenetic relationships among the three taxa of Dianthus in NE of Iran based on Bayesian analysis of DFR1-1 marker. Bayesian posterior probabilities are indicated above branches. The roman numbers (I–III) below the branches are explained in the text. The letters indicated in the brackets correspond to the accessions represented in the Table 1 followed by the number of alleles (in parenthesis) used in the phylogenetic analysis.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.