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R code and data for running models in "Rapid Growth of the Swainson's Hawk Population in California since 2005"
<p>By 1979 Swainson's Hawks (<em>Buteo swainsoni)</em> had declined to as low as 375 breeding pairs throughout their summer range in California. Shortly thereafter the species was listed as threatened in the state. To evaluate the hawk's population trend since then, we analyzed data from 1,038 locations surveyed throughout California in either 2005, 2006, 2016, or 2018. We estimated a total statewide population of 18,810 breeding pairs (95CI: 11,353–37,228) in 2018, and found that alfalfa (<em>Medicago sativa</em>, lucerne) cultivation, agricultural crop diversity, and the occurrence of non-agricultural trees for nesting were positively associated with hawk density. We also concluded that California's Swainson's Hawk summering population grew rapidly between 2005 and 2018 at a rate of 13.9% per year (95CI: 7.8–19.2%). Despite strong evidence that the species has rebounded overall in California, Swainson's Hawks remain largely extirpated from Southern California where they were historically common. Further, we note that the increase in Swainson's Hawks has been coincident with expanded orchard and vineyard cultivation which is not considered suitable for nesting. Therefore, we recommend more frequent, improved surveys to monitor the stability of the species' potential recovery and to better understand the causes. Our results are consistent with increasing raptor populations in North America and Europe that contrast with overall global declines, especially in the tropics.</p>
FIGURE 3. Localities where Rhabdosoma armatum, R in Pelagic amphipods (Crustacea: Amphipoda: Hyperiidea) in western Mexico. 7 Superfamily Platysceloidea. Family Oxycephalidae
FIGURE 3. Localities where Rhabdosoma armatum, R. brevicaudatum, and R. minor were collected during this survey.
Chong-Montenegro_and_Kindsvater_2022_R_code
<p>Supporting R code for: Chong-Montenegro C and Kindsvater HK (2022) Demographic Consequences of Small-Scale Fisheries for Two Sex-Changing Groupers of the Tropical Eastern Pacific. Front. Ecol. Evol. 10:850006. DOI: 10.3389/fevo.2022.850006</p> <p> </p> <p>Note: If you use this data or code please city the paper accordingly.</p>
Figure 5. Female reproductive system. A. R in Molecular phylogeny of European Runcinida (Gastropoda, Heterobranchia): the discover of an unexpected pool of complex species, with special reference to the case of Runcina coronata
Figure 5. Female reproductive system. A. R. coronata, southern England (MNCN 15.05/90423). B. R. aurata, La Caleta, Cádiz, south-western Spain, Atlantic Ocean (MNCN 15.05/88106). C. R. caletensis, La Caleta, Cádiz, south-western Spain, Atlantic Ocean (MNCN 15.05/200113). D. R. tingensis, Tangier, north-western Morocco, Atlantic Ocean (MNCN 15.05/91514). Abbreviations: FM, female mass; CGD, common genital duct; GO, gonopore.
Acoustic correlates of stress in 16 Australian languages [R Markdown]
<p>R Markdown with regression model results investigating the acoustic correlates of stress in 16 Indigenous Languages of Australia. Published as supplementary material to the author's dissertation, "Archival Phonetics & Prosodic Typology in Sixteen Australian Languages," 2022.</p>
Data from: Mridha S and Kümmerli R (2022) Enforced specialization fosters mutual cheating and not division of labour in the bacterium Pseudomonas aeruginosa
<p><span>A common way for bacteria to cooperate is via the secretion of beneficial public goods (proteases, siderophores, biosurfactants) that can be shared among individuals in a group. Bacteria often simultaneously deploy multiple public goods with complementary functions. This raises the question whether natural selection could favour division of labour where subpopulations or species specialise in the production of a single public good, whilst sharing the complementary goods at the group level. Here we use an experimental system, where we mix engineered specialists of the bacterium <em>Pseudomonas aeruginosa</em> that can each only produce one of the two siderophores, pyochelin or pyoverdine, and explore the conditions under which specialization can lead to division of labour. When growing pyochelin and pyoverdine specialists at different mixing ratios under different levels of iron limitation, we found that specialists could only successfully complement each other in environments with moderate iron limitation and grow as good as the generalist wildtype but not better. Under more stringent iron limitation, the dynamics in specialist communities was characterized by mutual cheating and with higher proportions of pyochelin producers greatly compromising group productivity. Nonetheless, specialist communities remained stable through negative frequency-dependent selection. Our work shows that specialization in a bacterial community can be spurred by cheating and does not necessarily result in beneficial division of labour. We propose that natural selection might favour fine-tuned regulatory mechanisms in generalists over division of labour because the former enables generalists to remain flexible and adequately adjust public good investments in fluctuating environments. </span></p>
FIGURE. Images of representative members of tribe Phyllantheae. (A) Flowers of Nellica maderaspatensis. (B) Pistillate flowers of Cathetus gracilis, note the unique disc covering the ovary. (C) Pistillate and staminate flowers of Cathetus glaucophyllus. (D) Staminate flowers of Nymphanthus glaucescens. (E) Fruits of Kirganelia muelleriana. (F) Fruits of Lysiandra subcrenulata. (G) Phylloclade with flowers of Phyllanthus angustifolius. (H) Flowering branchlet of Phyllanthus incrustatus, note the ornamentation on the axes. (I) Habit of Moeroris tenella. (J) Fruiting branch of Dendrophyllanthus tenuirhachis. (K) Fruits of Cicca profusa. (L) Fruiting branch of Emblica officinalis. (M) Flowering plant of Emblica urinaria. (N) Pistillate flower of Breynia disticha. (O) Staminate flower of Breynia disticha. (P) flower of Glochidion dunnianum. (Q) Staminate of Glochidion lanceolarium. (R) Dehisced capsule of Glochidion sp. showing seeds covered with a red sarcotesta. Photos: A & F by J.J. Bruhl; B & P by M.S. Nuraliev; C by T. Williams; E & K by C. Jongkind; H by B. Falcón; J by R.-Y. Yu; D, G, I, L, M, N, O, Q & R by R.W.Bouman. in A revised phylogenetic classification of tribe Phyllantheae (Phyllanthaceae)
FIGURE. Images of representative members of tribe Phyllantheae. (A) Flowers of Nellica maderaspatensis. (B) Pistillate flowers of Cathetus gracilis, note the unique disc covering the ovary. (C) Pistillate and staminate flowers of Cathetus glaucophyllus. (D) Staminate flowers of Nymphanthus glaucescens. (E) Fruits of Kirganelia muelleriana. (F) Fruits of Lysiandra subcrenulata. (G) Phylloclade with flowers of Phyllanthus angustifolius. (H) Flowering branchlet of Phyllanthus incrustatus, note the ornamentation on the axes. (I) Habit of Moeroris tenella. (J) Fruiting branch of Dendrophyllanthus tenuirhachis. (K) Fruits of Cicca profusa. (L) Fruiting branch of Emblica officinalis. (M) Flowering plant of Emblica urinaria. (N) Pistillate flower of Breynia disticha. (O) Staminate flower of Breynia disticha. (P) flower of Glochidion dunnianum. (Q) Staminate of Glochidion lanceolarium. (R) Dehisced capsule of Glochidion sp. showing seeds covered with a red sarcotesta. Photos: A & F by J.J. Bruhl; B & P by M.S. Nuraliev; C by T. Williams; E & K by C. Jongkind; H by B. Falcón; J by R.-Y. Yu; D, G, I, L, M, N, O, Q & R by R.W.Bouman.
Subspecies and Distribution. P.r. rubiginosus Geoffroy Saint-Hilaire, 1831 — India. P. r. koladivinus Deraniyagala, 1956 — dry zone of Sri Lanka. P. r. phillipsi Pocock, 1939 — wet zone of SW Sri Lanka. in Felidae
Subspecies and Distribution. P.r. rubiginosus Geoffroy Saint-Hilaire, 1831 — India. P. r. koladivinus Deraniyagala, 1956 — dry zone of Sri Lanka. P. r. phillipsi Pocock, 1939 — wet zone of SW Sri Lanka.
Subspecies and Distribution. L. l. lynx Linnaeus, 1758 — N and W Europe E to the Yenisei River in Russia. L. l. carpathicus Kratochvil & Stollman, 1963 — Carpathian Mts S to Bulgaria and Greece. L. l. dinniki Satunin, 1915 — Caucasus Mts S to Turkey and N Iran. L. l. isabellinus Blyth, 1847 — Pamir and Kunlun Mts, Kashmir, C & W China. L. l. kozlovi Fetisov, 1950 — C Siberia, from the R Yenisei to Lake Baikal. L. l. neglectus Stroganov, 1962 — Russian Far East, Korea, and NE China (Manchuria). L. l. wrangeli Ognev, 1928 — E Siberia, S to the Stanovoy Mts. in Felidae
Subspecies and Distribution. L. l. lynx Linnaeus, 1758 — N and W Europe E to the Yenisei River in Russia. L. l. carpathicus Kratochvil & Stollman, 1963 — Carpathian Mts S to Bulgaria and Greece. L. l. dinniki Satunin, 1915 — Caucasus Mts S to Turkey and N Iran. L. l. isabellinus Blyth, 1847 — Pamir and Kunlun Mts, Kashmir, C & W China. L. l. kozlovi Fetisov, 1950 — C Siberia, from the R Yenisei to Lake Baikal. L. l. neglectus Stroganov, 1962 — Russian Far East, Korea, and NE China (Manchuria). L. l. wrangeli Ognev, 1928 — E Siberia, S to the Stanovoy Mts.
The Potential of GNSS-R for Freeze/Thaw Surface State Monitoring in the New Space Era
<p><em><strong>GNSS-R based F/T surface state maps over the Tibet Plateau, Andes Mountains, and Rocky Mountains covering two full F/T cycles 2019-2020:</strong> </em></p> <p><em><strong>(a) </strong>Number of frozen months during 2019</em></p> <p><em><strong>(b)</strong> number of thawed months during 2019</em></p> <p><em><strong>(c) </strong>number of frozen months during 2020</em></p> <p><em><strong>(d)</strong> number of thawed months during 2020</em></p> <p><em><strong>(e) </strong>difference of the number of frozen months between 2019 and 2020</em></p> <p><em><strong>(f) </strong>difference of the number of thawed months between 2019 and 2020</em></p> <p><em><strong>(g) </strong>number of frozen months during the 2019 freezing period (September to December)</em></p> <p><em><strong>(h) </strong>number of thawed months during the 2019 thawing period (January to June)</em></p> <p><em><strong>(i) </strong>number of frozen months during the 2020 freezing period (September to December)</em></p> <p><em><strong>(j)</strong> number of thawed months during the 2020 thawing period (January to June)</em></p> <p><em><strong>(k) </strong>difference of the number of frozen months between 2019 and 2020 during the freezing period (September to December)</em></p> <p><em><strong>(l) </strong>difference of the number of thawed months between 2019 and 2020 during the thawing period (January to June)</em></p>
Supplementary material 1 from: Fernandes N, Ferreira EM, Pita R, Mira A, Santos SM (2022) The effect of habitat reduction by roads on space use and movement patterns of an endangered species, the Cabrera vole Microtus cabrerae. In: Santos S, Grilo C, Shilling F, Bhardwaj M, Papp CR (Eds) Linear Infrastructure Networks with Ecological Solutions. Nature Conservation 47: 177-196. https://doi.org/10.3897/natureconservation.47.71864
The effect of habitat encroachment by roads on space use and movement patterns of an endangered vole
On following pages 20 Crete Pıpıstre le (Prpısrrelus crencas) 21 Hanaks Pıpıstre Ie Pıpıstrs us hanak 22 Nathus u Pıpıstrel e Pıpıstne us namas » 23 Made ra Ppı tre le Hpvsrre us maderensrs) 24 Kuh s Pıpı tre le Pıpıstrelus kuh r) 25 Dusky Ppıstrele Pıpıstre us hespendus) 26 Rusty Pıpı tre e Ffipısrıs us ıuslıcus) 27 Tny Pp: trele Pıpıstra us nanu us) 28 Ae en Pıpıstre e (Hpıstre us nexspectatus) 29 Mount Gargue Pıpı tre e ñpısrra usaem) 30 Dares Salaam Ppıstre e Pıpısrrs us permxms) 31 Receys Ppı trele Pıpıstra us raœyr) 32 Dhofar Pıp trele Hpısrrs us dhofarenssb 33 Japanese Ppıstre e Pıpıstre us abramus) 34 Endo Ppı tre e Pıpıstrısl us sudor) 35 Sturdees Pıpıstrele Pıpıstre us snırdeeı) 36 Javan Pıpıstrele (Pıpıstre us ¡avamcusl 37 ndıan Pıp trele Hpıstrel us command/a) 38 Kelaans Pıp stre e Hpısrrs usceylonıcııs) 39 Lea tPıpıstrelle Pıpıstral us tenus) 40 Mount Popa Hpıstrelle Ftpıstre usparercuus) 41 Narrcıwwınged Ppstrele (Pıpısrre us stenopterus) 42 Mnahessa Pıpıstre e ñpısrre us mnahassae) 43 Greater Papuan Hp: trele Pıpısrrelus nus) 44 Lessef Papuan Pıpı trelle (Hpısrre us pıpuanus) 45 New Gu nee Pıpıstrelle (Pıpısrrelusangulams) 46 Wattss Ppıstfe Ie (Hpısrrul us watts!) 47 Northern Pıpıstre Ie Pıpıstra us westmsi 48 Forest Pıpısuelle Rpıstralusadamsı) in Vespertilionidae
On following pages 20 Crete Pıpıstre le (Prpısrrelus crencas) 21 Hanaks Pıpıstre Ie Pıpıstrs us hanak 22 Nathus u Pıpıstrel e Pıpıstne us namas » 23 Made ra Ppı tre le Hpvsrre us maderensrs) 24 Kuh s Pıpı tre le Pıpıstrelus kuh r) 25 Dusky Ppıstrele Pıpıstre us hespendus) 26 Rusty Pıpı tre e Ffipısrıs us ıuslıcus) 27 Tny Pp: trele Pıpıstra us nanu us) 28 Ae en Pıpıstre e (Hpıstre us nexspectatus) 29 Mount Gargue Pıpı tre e ñpısrra usaem) 30 Dares Salaam Ppıstre e Pıpısrrs us permxms) 31 Receys Ppı trele Pıpıstra us raœyr) 32 Dhofar Pıp trele Hpısrrs us dhofarenssb 33 Japanese Ppıstre e Pıpıstre us abramus) 34 Endo Ppı tre e Pıpıstrısl us sudor) 35 Sturdees Pıpıstrele Pıpıstre us snırdeeı) 36 Javan Pıpıstrele (Pıpıstre us ¡avamcusl 37 ndıan Pıp trele Hpıstrel us command/a) 38 Kelaans Pıp stre e Hpısrrs usceylonıcııs) 39 Lea tPıpıstrelle Pıpıstral us tenus) 40 Mount Popa Hpıstrelle Ftpıstre usparercuus) 41 Narrcıwwınged Ppstrele (Pıpısrre us stenopterus) 42 Mnahessa Pıpıstre e ñpısrre us mnahassae) 43 Greater Papuan Hp: trele Pıpısrrelus nus) 44 Lessef Papuan Pıpı trelle (Hpısrre us pıpuanus) 45 New Gu nee Pıpıstrelle (Pıpısrrelusangulams) 46 Wattss Ppıstfe Ie (Hpısrrul us watts!) 47 Northern Pıpıstre Ie Pıpıstra us westmsi 48 Forest Pıpısuelle Rpıstralusadamsı)
Subspecies and Distribution. C.r.rafinesquiiLesson,1827—E&SIllinois,W&SIndiana,SOhio,SEMissouri,Ken-tucky,Tennessee,WNorthCarolina,andEArkansas(EUSA). C. r. macrotis Le Conte, 1831 — E North Carolina, South Carolina, Georgia, Florida, Alabama, Mississippi, Louisiana, E Texas, and extreme SW Arkansas. in Vespertilionidae
Subspecies and Distribution. C.r.rafinesquiiLesson,1827—E&SIllinois,W&SIndiana,SOhio,SEMissouri,Ken-tucky,Tennessee,WNorthCarolina,andEArkansas(EUSA). C. r. macrotis Le Conte, 1831 — E North Carolina, South Carolina, Georgia, Florida, Alabama, Mississippi, Louisiana, E Texas, and extreme SW Arkansas.
Subspecies and Distribution. R.p.parvulaH.Allen,1866—MariasIs,offNayarit,Mexico. R. p. major G. G. Goodwin, 1958 — Pacific coast of Mexico, from Sonora S to Oaxaca. in Vespertilionidae
Subspecies and Distribution. R.p.parvulaH.Allen,1866—MariasIs,offNayarit,Mexico. R. p. major G. G. Goodwin, 1958 — Pacific coast of Mexico, from Sonora S to Oaxaca.
Subspecies and Distribution. R.m.minutillaG.S.Miller,1897—GuajiraPeninsulaofColombiaandVenezuelaStoCaquetaandCaucadepartmentsinWColombia,andelsewhereinVenezuelaNofMéridaState,includingMargaritaI. R. m. cautiva Soriano, Naranjo & Farinas, 2004 — isolated population in xeric intermontane basin of rivers Chama and Nuestra Senora, Mérida State, NW Venezuela. in Vespertilionidae
Subspecies and Distribution. R.m.minutillaG.S.Miller,1897—GuajiraPeninsulaofColombiaandVenezuelaStoCaquetaandCaucadepartmentsinWColombia,andelsewhereinVenezuelaNofMéridaState,includingMargaritaI. R. m. cautiva Soriano, Naranjo & Farinas, 2004 — isolated population in xeric intermontane basin of rivers Chama and Nuestra Senora, Mérida State, NW Venezuela.
One of the first cryptic mammal species discovered, when it was separated from the morphologically similar R. tumida (= R. bickhami) based on karyological studies. Karyotype of 2n = 42 of R. genowaysi is identical to that observed in R. velilla, but these species are genetically distinct; their ranges do not overlap. R. genowaysi is morphologically very similar to other species within the R. tumida complex and is sympatric with R. bickhami (2n = 34). Monotypic. Distribution. Two nearby localities in Pacific lowlands of S Chiapas, S Mexico. in Vespertilionidae
One of the first cryptic mammal species discovered, when it was separated from the morphologically similar R. tumida (= R. bickhami) based on karyological studies. Karyotype of 2n = 42 of R. genowaysi is identical to that observed in R. velilla, but these species are genetically distinct; their ranges do not overlap. R. genowaysi is morphologically very similar to other species within the R. tumida complex and is sympatric with R. bickhami (2n = 34). Monotypic. Distribution. Two nearby localities in Pacific lowlands of S Chiapas, S Mexico.
Subspecies and Distribution. N.r.rendalliThomas,1889—SenegalEtoChad. N. r. phasma G. M. Allen, 1911 — Sudan and Somalia S to Botswana, Mozambique, and E South Africa. in Vespertilionidae
Subspecies and Distribution. N.r.rendalliThomas,1889—SenegalEtoChad. N. r. phasma G. M. Allen, 1911 — Sudan and Somalia S to Botswana, Mozambique, and E South Africa.
Subspecies and Distribution. R.n.nasutusDobson,1877—EAfghanistan,SEIran,andSPakistan. R.n.batinensisD.L..Harrison,1968—ESaudiArabia,UnitedArabEmirates,andOman;possiblyalsoQatarandBahrain. R.n.matschietThomas,1905—SWSaudiArabiaandYemen. R. n. pellucens Thomas, 1906 — Mesopotamian region of S Iraq and Iran; possibly Kuwait. in Vespertilionidae
Subspecies and Distribution. R.n.nasutusDobson,1877—EAfghanistan,SEIran,andSPakistan. R.n.batinensisD.L..Harrison,1968—ESaudiArabia,UnitedArabEmirates,andOman;possiblyalsoQatarandBahrain. R.n.matschietThomas,1905—SWSaudiArabiaandYemen. R. n. pellucens Thomas, 1906 — Mesopotamian region of S Iraq and Iran; possibly Kuwait.
Subspecies and Distribution. P.r.rusticusTomes,1861—scatteredrecordsfromWAfricafromSenegaltoEEthiopiaalongwithNUgandaandWCKenya. P. r. marrensis Thomas & Hinton, 1923 — S Africa in SE Angola, Zambia, NE Namibia, N Botswana, Zimbabwe, and NE South Africa; perhaps also Malawi, although specimens from that region need to be reexamined and are not mapped here. There is also a record from E Tanzania, although its subspecific identity is uncertain. in Vespertilionidae
Subspecies and Distribution. P.r.rusticusTomes,1861—scatteredrecordsfromWAfricafromSenegaltoEEthiopiaalongwithNUgandaandWCKenya. P. r. marrensis Thomas & Hinton, 1923 — S Africa in SE Angola, Zambia, NE Namibia, N Botswana, Zimbabwe, and NE South Africa; perhaps also Malawi, although specimens from that region need to be reexamined and are not mapped here. There is also a record from E Tanzania, although its subspecific identity is uncertain.
Transformed raw data and R scripts for the paper Problem reports and team maturity in agile automotive software development published at CHASE2022
<p>Transformed raw data and R scripts for the paper Problem reports and team maturity in agile automotive software development published at CHASE2022</p> <p>15th International Conference on Cooperative and Human Aspects of Software Engineering, May 21–22, 2022, Pittsburgh, PA, USA}´</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.