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Dataset results
1,944 results for “Class I”
RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination
GEO Series GSE95635. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomic analysis of class I odorant receptor enhancer deletion [eB]
GEO Series GSE133818. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Utility of the Del-Mar 14K Chicken Microarray for Transcriptional Profiling in Different Orders of the Class Aves
GEO Series GSE9500. Meleagris gallopavo; Passer montanus; Coturnix japonica; Anas platyrhynchos; Gallus gallus; Falco sparverius. 43 samples. Type: Expression profiling by array.
DYRK1A regulates B cell class switch recombination through phosphorylation of MSH6
GEO Series GSE206146. Mus musculus. 14 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide target analysis of Class III HD-ZIP transcription factors [ChIP-Seq]
GEO Series GSE80686. Arabidopsis thaliana. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Functional effects on HUVEC of CD63+ and MHC class 1+ subsets of extracellular vesicle produced by wild type and CD47-deficient T cells
GEO Series GSE185918. Homo sapiens. 18 samples. Type: Expression profiling by array.
Characterization of three CpG ODN classes in B cells
GEO Series GSE142689. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Q_Filters_Essential_tremor_4_classes
<p>Dataset preview for reviewers.</p>
Objective and subjective well-being of middle class in Poland
<p>The database is connected with the project titled Subjective and Objective Well-being of Middle Class in Poland (NCN grant Miniatura number 2021/05/X/HS4/00213).</p> <p>The data were collected in June 2022 among 1200 respondents all over Poland. The 1200 respondents were drawn randomly using a well-established official database, covering socio-economic and demographic factors such as age, region, gender, education, income, etc. That allows generalizing the results.</p> <p>The statistical sample consisted of 1200 Poles in the following income groups: 200 with disposable household income per person below 2155 PLN; 800 with disposable household income per person between 2155-5746 PLN; and 200 with disposable household income per person above 5746 PLN, respectively. The interview was conducted using the CAWI method by DRB Polonia, commissioned by Nicolaus Copernicus University in Torun, based on the survey prepared by the study's author. The survey fulfilled the ethical requirements. The respondents' consent to participate in the survey was preceded by the interviewer providing reliable information on the scope, purpose, and possibility of refusing to participate in the study and the anonymity of the answers provided. The anonymity means that the results gathered during the research were used solely for collective statistical analyses and were not identified with a given respondent.</p>
Dataset related to article "Identification of a class of non-conventional ER-stress response-derived immunogenic peptides (ERStreP)"
<p>This record contains raw data and scripts (R software) applied to get Figure 5 and Figure S8 related to article “Identification of a class of non-conventional ER-stress response-derived immunogenic peptides (ERStreP)”</p> <p>Immune checkpoint blockade (ICB) has changed the prognosis of previously untreatable tumors. However, a fraction of patients is refractory to ICB therapy. Ongoing efforts to overcome resistance have focused on vaccination strategies using neoepitopes, although these cannot be applied on a large scale due to the "private" nature of cancer mutations. Here we show that infection of tumor cells with <em>Salmonella</em> induces the opening of membrane hemichannels and the release of proteasome-generated peptides in the extracellular milieu via the exacerbation of endoplasmic reticulum (ER)-stress and the unfolded protein response. Peptides released by cancer cells induced a strong antitumor response <em>in vivo</em>, both in mice bearing B16F10 melanomas and in dogs suffering of osteosarcoma and high-grade sarcoma. Mass spectrometry analysis on the supernatant of human melanoma cells revealed 12 released peptides capable of priming healthy donor CD8<sup>+</sup> T cells that recognize and kill human melanoma cells <em>in vitro</em> and when xenotransplanted <em>in vivo</em>, but not healthy melanocytes. Hence, we identified a novel class of tumor antigens that are generated in ER-stressed cells, such as tumor cells, and that do not induce central or peripheral tolerance, nor are presented by healthy cells.</p> <p> </p>
Classes
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Genome-wide target analysis of Class III HD-ZIP transcription factors [RNA-Seq]
GEO Series GSE80571. Arabidopsis thaliana. 20 samples. Type: Expression profiling by high throughput sequencing.
RNAseq data on HDAC Class IIa inhibitor (CHDI-00390576) dosed Q175 mice.
GEO Series GSE104064. Mus musculus. 160 samples. Type: Expression profiling by high throughput sequencing.
Diverse Heterochromatin-Associated Proteins Repress Distinct Classes of Genes and Repetitive Elements (ChIP-seq)
GEO Series GSE154214. Homo sapiens. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Targeting class A GPCRs for hard tissue regeneration [microarray]
GEO Series GSE217436. Homo sapiens. 1 samples. Type: Expression profiling by array.
MYC plus class IIa HDAC inhibiton potentiates mitochondrial dysfunction in non-small cell lung cancer [RNA-seq]
GEO Series GSE279133. Homo sapiens. 64 samples. Type: Expression profiling by high throughput sequencing.
Diverse Heterochromatin-Associated Proteins Repress Distinct Classes of Genes and Repetitive Elements (srHC-seq)
GEO Series GSE154232. Homo sapiens. 8 samples. Type: Other.
Human CD4 cytotoxic T lymphocytes mediate potent tumor control via tumor cell HLA 2 class II expression in a humanized immune system mouse model
GEO Series GSE223026. Homo sapiens; Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing.
Three-year performance of a nano-filled resin-modified glass ionomer in class II primary molar restorations
<p>Dataset for all analyses done in the paper</p>
Supplemental Tables for: "A toolbox for class I HDACs reveals isoform specific roles in gene regulation and protein acetylation"
<p>Supplemental Table 1 - Supplement to Figure 3 and 4: MS shotgun experiment</p> <p>Supplemental Table 2 - Supplement to Figure S3: Targeted proteomics approach</p> <p>Supplemental Table 3 - Supplement to Figure 5 and S4: Gene expression analysis </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.