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zenodo36/100

Fig. 1. A in The megadrile fauna (Annelida: Oligochaeta) of Queen Elizabeth Park, South Africa: species composition and distribution within different vegetation types

Fig. 1. A map of Queen Elizabeth Park, showing the different vegetation types.

opencc-by-4.0Dec 2012View details →
zenodo36/100

Low-Cost Sustainable Engineered Geopolymer Composites (EGCs) for Repair and New Construction of Transportation Infrastructure

<p>This study evaluated the use of cost-effective alternative materials in the formulation of novel low-cost Engineered Geopolymer Composite (EGC) materials for repair and new construction of transportation infrastructure in Region 6. Previous studies and reports have shown that EGCs have excellent mechanical properties, which makes them an eco-friendly and more sustainable alternative to Engineered Cementitious Composites (ECCs). However, the mass adoption of these emerging composites is expected to be hindered by their cost, which is mainly driven by the use of PVA reinforcing fibers, silica fume (SF), and manufactured microsilica sand (MS). To address this key shortcoming, novel low-cost EGC materials for repair and new construction of transportation infrastructure in Region 6 were developed by: (1) metakaolin (MK) and fly ash (FA) as replacements of commonly used SF for GP binders; (2) low-cost PP fiber, PVA fiber, and hybrid systems of PP and PVA fiber; and (3) natural sand instead of commonly used manufactured MS. The MK-FA GP binders were tested for compressive strength and characterized with scanning electron microscopy (SEM) and energy-dispersive X-ray spectroscopy (EDS), while the MK-FA GP composites were tested for workability, compressive strength, and uniaxial tensile strength (UTT). Based on the experimental findings, it was concluded that 20-40 wt% of FA replacement was the optimal range for Na-based MK-FA GP with the strength values of ~12-14 MPa, while 50 wt% of FA replacement had the highest strength for K-based MK-FA GP of 17.2 MPa at 90-day. For composites, the mortar with the highest compressive strength reached a value of 10.6 MPa with 45% of river sand, and with 4 wt% SF and 1.5% PVA+0.25% PP fibers, it reached 21 MPa as a fiber-reinforced composite at 28-day. The composite with 10 wt% SF and 1.75% PE had the highest UTT of 3.97 MPa and a strain capacity of 1.78%. All the slant shear test specimens meet the 28-day shear bond strength requirement according to ASTM C882.</p>

opencc-by-4.0Oct 2022View details →
zenodo36/100

Development of Ultra-High Performance Engineered Geopolymer Composites (UHP-EGCs)

<p>This study investigated the possibility of developing novel UHP-EGC materials for the repair and new construction of transportation infrastructure in Region 6 by utilizing locally available resources. To this end, the geopolymers (GPs) in this study were synthesized by activating metakaolin (MK) with potassium silicate and sodium silicate solutions. The solutions were manufactured in the laboratory by dissolving silica fume and potassium hydroxide (KOH) or sodium hydroxide (NaOH) in deionized water. MK-based GP binders, mortars, and fiber-reinforced composites were manufactured and evaluated to determine their density, compressive strength, tensile properties, and slant shear bond strength to Portland cement concrete (PCC). Based on the experimental findings, it was concluded that both MG7500 and FA4404 admixtures improved the workability but reduced the compressive strength of the GP. The inclusion of both microsilica sand and UHMWPE fibers (i.e., plasma-treated and pristine UHMWPE fibers) led to an improvement in compressive strength. Plasma-treated UHMWPE fibers exhibited a higher compressive strength compared to pristine UHMWPE fibers. The uniaxial tensile test results revealed that the composites with pristine and plasma-treated UHMWPE fibers at 1.5 vol.% exhibited robust pseudo-strain hardening (PSH) behavior. Furthermore, the best-performing composite (i.e., composite with plasma-treated fibers) exhibited a tensile strength and strain capacity of 6.65 MPa and 6.26%, respectively. The slant shear test revealed that all the materials passed the minimum requirement (i.e., 28-day shear bond strength greater than 13 MPa) to be used as a repair material. While the compressive strength of the developed GP composites using different techniques reached up to 73 MPa, future research should be directed toward the evaluation of hybrid systems (such as MK and slag) to achieve a compressive strength greater than 120 MPa.</p>

opencc-by-4.0Nov 2022View details →
dryad36/100

Data for: Ingredient and nutrient composition of brown bear diets

<p><span>The dietary nutrient profile has metabolic significance and possibly contributes to species' foraging behavior. The brown bear (<em>Ursus arctos</em>) was used as a model species for which dietary ingredient and nutrient concentrations as well as nutrient ratios were determined annually, seasonally and per reproductive class. Brown bears had a vertebrate- and ant-dominated diet in spring and early summer and a berry-dominated diet in fall, which translated into protein-rich and carbohydrate-rich diets, respectively. Fiber concentrations appeared constant over time and averaged at 25 % of dry matter intake. Dietary ingredient proportions differed between reproductive classes; however, these differences did not translate into a difference in dietary nutrient concentrations, suggesting that bears manage to maintain similar nutrient profiles with selection of different ingredients. In terms of nutrient ratios, the dietary protein to non-protein ratio, considered optimal at around 0.2 (on metabolizable energy basis), averaged around 0.2 in this study in fall and around 0.8 in spring and summer. We introduced the minimal non-fat to fat ratio necessary for efficient maintenance metabolism. This ratio varied across seasons but never fell beneath the theoretically estimated minimum to ensure metabolic efficiency. This population thus managed to ingest diets that never exerted a lack of glucogenic substrate, suggesting that metabolic efficiency may either be a driver of active diet selection or that natural resources available to bears did not constitute a constraint in this respect. Given the considerable proportion of fiber in the diet of brown bears, the relevance of this nutrient and its role in foraging behavior might be underestimated.</span></p>

opencc-zeroMay 2023View details →
dryad36/100

Data for: Tree species size class patterns portend compositional shifts and low resilience in managed northern hardwood forests

<p><span>Declining biodiversity is a global challenge to sustainability and resilience of ecosystems facing multiple novel stressors, including climate change and invasive pests-pathogens. Northern hardwood forests (NHF) of the Great Lakes region have experienced declines in canopy tree diversity since European colonization, with current tree regeneration patterns in some areas suggesting perpetuation of this trend. However, regional (10<sup>6</sup> ha) patterns and possible causes are underexplored. To address this information gap, we used data from 141 managed NHF stands, Michigan, USA to examine diversity indices across tree size classes (seedling, sapling, and canopy); stand-level drivers of regeneration (seedling and sapling) diversity and individual species density; and patterns among species in relative abundances across size classes. Diversity was similar across size classes (mean asymptotic species richness of 6 – 7 species and &lt;3 effective common species); however, some species contributing to sapling diversity are unlikely to contribute to future canopy diversity (<em>Fraxinus americana </em>and<em> Fagus grandifolia</em>, insect/pathogen limited; <em>Ostrya virginiana, </em>small maximum size). For the 11 most common species, conspecific canopy density (+, significant for 11 seedlings, 11 species) and stand basal area (-, saplings, 3 species) were the most consistent drivers of density, with less consistent effects for deer use, site quality, and substrate. Patterns of relative density by size class among the 18 species present on &gt; 10 % of sites were consistent with theories of establishment or recruitment limitations due to deer browsing, deep shade, or limited suitable substrate. For seven species (including e.g., <em>Tsuga canadensis</em><span>, </span><em>Betula alleghaniensis, Populus grandidentata, Tilia americana</em><span>)</span>, relative abundance was lowest in the seedling layer and increased in larger size classes, <span>suggesting seedling establishment substrate and/or early shade mortality limitations. For two species (<em>Acer saccharum, Quercus rubra.</em>), patterns of reduced sapling relative abundance compared to seedling or canopy strata suggests a sapling recruitment bottleneck from deer browsing/shade, whereas six species (e.g., <em>F</em></span><em>agu<span>s grandifolia, Ostrya virginiana, Pinus strobus</span></em><span>) had highest relative density for saplings suggesting sapling to canopy recruitment limitations. Lastly, seedlings were relatively most abundant for </span><em>Acer rubrum </em><span>and </span><em>Prunus </em><span>spp., indicating disproportionally high seedling establishment, if not sapling or canopy recruitment, and for F. Americana, consistent with recent pest-related canopy mortality. Our results</span> suggest sustained low diversity and shifting composition are being driven by limited local seed availability, deep shading, limited seedling establishment substrate, and abundant deer. Management aimed at overcoming these specific limitations may be necessary to promote future NHF resilience.</span></p>

opencc-zeroMay 2023View details →
dryad36/100

Data from: Social group composition modulates the role of last male sperm precedence in post-copulatory sexual selection

<p>In many species, the order in which males mate with a female explains much of the variation in paternity arising from post-copulatory sexual selection. Research in <em>Drosophila</em> suggests that mating order may account for the majority of the variance in male reproductive success. However, the effects of mating order on paternity bias might not be static but could potentially vary with social or environmental factors. To test this idea, we used an existing dataset, collated from an experiment we previously published (Morimoto et al. 2016), with the addition of unpublished data from the same experiment. These previous experiments manipulated larval density in <em>Drosophila</em> <em>melanogaster</em> which generated variation in male and female body size, assembled groups of individuals of different sizes, and measured the mating success and paternity share of focal males. The data presented here provide information on each focal male's mating order and the frequency in which focal males remated with the same females ('repetitive matings'). We combined this information with our previously reported focal male reproductive success to partition variance in paternity into male mating order and repetitive matings across groups that differed in the body size composition of males and females. We found, as expected, that male mating order explained a considerable portion of the variance in male paternity. However, we also found that the impact of male mating order on male paternity was influenced by the body size composition of groups. Specifically, males that tended to mate last had a greater paternity advantage, and displayed lower variance, in groups containing a heterogenous mixture of male body sizes than in groups with a single male body size. Repetitive mating only had a minor contribution to the variance in male paternity share across all experiments. Overall, our findings contribute to the growing body of research showing that post-copulatory sexual selection is subject to socio-ecological influences.</p>

opencc-zeroMay 2023View details →
dryad36/100

Inflammatory responses induced by the monophasic variant of Salmonella typhimurium in pigs play a role in the high shedder phenotype and fecal microbiota composition

<p>Pigs infected with <em><span>Salmonella</span></em> may excrete large amounts of <em><span>Salmonella</span></em>, increasing the risk of spread of this pathogen in the food chain. Identifying <em><span>Salmonella</span></em> high shedder pigs is therefore required to mitigate this risk. We analyzed immune-associated markers and composition of the gut microbiota in specific-pathogen-free pigs presenting different shedding levels after an oral infection with <span>Salmonella</span>. Immune response was studied through total blood cell counts, production of anti-<em><span>Salmonella</span></em> antibodies and cytokines, and gene expression quantification. Total <em><span>Salmonella</span></em> shedding for each pig was estimated and hierarchical clustering was used to cluster pigs into high, intermediate, and low shedders. Gut microbiota compositions were assessed using 16S rRNA microbial community profiling. Comparisons were made between control and inoculated pigs, then between high and low shedders pigs. Prior to infection, high shedders had similar immunological profiles compared to low shedders. As soon as 1 day postinoculation (dpi), significant differences in the cytokine production level and on the expression level of several host genes related to a proinflammatory response were observed between high and low shedders. Infection with <em><span>Salmonella</span></em> induced an early and profound remodeling of the immune response in all pigs, but the intensity of the response was stronger in high shedders. In contrast, low shedders seroconverted earlier than high shedders. Just after induction of the proinflammatory response (at 2 dpi), some taxa of the fecal microbiota were specific to the shedding phenotypes. This was related to the enrichment of several functional pathways related to anaerobic respiration in high shedders. In conclusion, our data show that the immune response to <em><span>Salmonella</span></em> modifies the fecal microbiota and subsequently could be responsible for shedding phenotypes. Influencing the gut microbiota and reducing intestinal inflammation could be a strategy for preventing <em><span>Salmonella</span></em> high shedding in livestock.</p>

opencc-zeroJun 2023View details →
zenodo36/100

Evaluation of Fresh and Hardened Properties of 3D-Printed Engineered Cementitious Composites (ECC) Designed for Sustainable and Resilient Infrastructure Systems

<p>3D concrete printing is a cutting-edge construction technique that has the potential to revolutionize the construction industry due to cost-saving in terms of labor and formwork costs, efficiency in construction, lower safety-related risks, and a higher degree of automation. However, several issues still make its adoption relatively slower on a large scale. Engineered cementitious composites (ECC), a class of ultra-high-strength concrete, can be a potential solution to some problems, such as reinforcement and durability. The preliminary phase of a Tran SET project focused on the design of 3D printable ECC, considering the concrete mix design proportions and their potential effects on fresh and hardened properties to achieve an optimized printable ECC mix. The type and content of various concrete ingredients such as cement, admixtures, aggregates, and fibers have considerable influence on the several properties in the fresh and hardened state. The replacement levels for cement were 0%, 50%, and 75% for mineral admixture, 10% for silica fume, and 0.4% for nano-clay by cement mass. Locally available fine aggregates were also used at 25% and 40% by mass of binder. In addition, the influence of fiber types and contents was also investigated. Two types of fibers, polyethylene (PE) and polyvinyl alcohol (PVA) fibers, were used at different levels, such as 0%, 1%, 1.5%, and 2% of the total volume of the mix. Moreover, four mixes, including FA50-MC, FA40SF10-MC, S50-MC, and FA40MK10-MC, were evaluated in terms of mechanical performance (flexural strength and direct tensile strength). The flowability of the ECC mixes was reduced with the incorporation of slag, metakaolin, higher aggregate content, and PE fibers. The 2% of both PVA and PE fibers had a reduction in compressive strength as compared to the low fiber content. Moreover, the PE-ECC exhibited superior tensile ductility as compared to the PVA-ECC due to the more fiber bridging by the PE fibers at the crack interface.</p>

opencc-by-4.0Jul 2022View details →
zenodo36/100

Gut microbe compositions in High Fat diet

<p>This study aimed to explore the relationship between the gut microbiome and liver function, with the objective of identifying a specific bacterial species that may exhibit beneficial effects in improving the symptoms of NAFLD. We conducted a comparative analysis of the gut microbiome composition between mice fed a normal chow (NC) diet and mice fed a high-fat (HF) diet in order to identify specific gut microbes. The consumption of a high-fat diet led to a decrease in the prevalence of Kineothrix bacteria. To assess the effects of Kineothrix on liver health, we conducted a comparative analysis of the gut microbiome composition between mice fed a diet high in fat and fructose (HFHF), with and without the administration of Kineothrix.</p>

opencc-by-4.0Jun 2023View details →
dryad36/100

Compositional shifts of alpine plant communities across the High Andes

<p><strong>Aim</strong>: Climate change is transforming mountain summit plant communities worldwide, but we know little about such changes in the High Andes. Understanding large-scale patterns of vegetation changes across the Andes, and the factors driving these changes, is fundamental to predicting the effects of global warming. We assessed trends in vegetation cover, species richness (SR) and community-level thermal niches (CTN) and tested whether they are explained by summits' climatic conditions and soil temperature trends.</p> <p><strong>Location</strong>: High Andes</p> <p><strong>Time period</strong>: Between 2011/2012 and 2017/2019</p> <p><strong>Major taxa studied</strong>: Vascular plants</p> <p><strong>Methods</strong>: Using permanent vegetation plots placed on 45 mountain summits and soil temperature loggers situated along a ~6,800 km N-S gradient, we measured species and their percentage cover and estimated CTN in two surveys (intervals between 5-8 years). We then estimated the annual rate of changes for the three variables and used generalized linear models to assess their relationship with rates of change in the locally recorded soil temperatures, annual precipitation, and the minimum air temperatures of each summit.</p> <p><strong>Results</strong>: Over time, there was an average loss of vegetation cover (mean = -0.26 %/yr), and a gain in SR across summits (mean = 0.38 species m<sup>2</sup>/yr), but most summits had significant increases in SR and vegetation cover. Changes in SR were positively related to minimum air temperature and soil temperature rate of change. Most plant communities experienced shifts in their composition by including greater abundances of species with broader thermal niches and higher optima. However, the measured changes in soil temperature did not explain the observed changes in CTN.</p> <p><strong>Main conclusions</strong>: High-Andean vegetation is changing in cover and SR and is shifting towards species with wider thermal niche breadths. The weak relationship with soil temperature trends could have resulted from the short study period that only marginally captures changes in vegetation through time.</p>

opencc-zeroJun 2023View details →
dryad36/100

Soil amendment with biochar and manure alters wood stake decomposition and fungal community composition

<p><span>Biochar and manure can be used for </span>sustainable land management<span>. However, little is known about how soil amendments might affect surface- and below-ground microbial processes and subsequent wood decomposition</span>. In a split-split-split plot design, we amended soil with two rates of manure (whole plot; 0 and 9 Mg ha<sup>-1</sup>) and biochar (split-plot; 0 and 10 Mg ha<sup>-1</sup>). <span>Wood stakes of three species (hybrid poplar, triploid<em> Populus tomentosa</em> Carr.; aspen, <em>Populus tremuloides</em> Michx.; and pine, <em>Pinus taeda</em> L.) were placed in two positions (horizontally on the soil surface, and inserted vertically in the mineral soil), which served as </span>a substrate for fungal growth<span>. In 3 years, the decomposition rate (mass loss), moisture content, and fungal community (via high-throughput sequencing methods) of stakes were evaluated. Results indicated</span> that <span>biochar and/or manure increased the wood stake decomposition rates, moisture content, and operational taxonomic unit (OTU) abundance. However, the richness and diversity of fungi </span>were<span> dependent on wood stake position (surface &gt; mineral), species (pine &gt; the two <em>Populus</em>), and sample dates. This study highlights that soil amendment with biochar and/or manure can alter the fungal community, which in turn can enhance an important soil process (i.e., decomposition).  </span></p>

opencc-zeroJun 2023View details →
zenodo36/100

Supplementary material for "A Rapid, Open-Source CCT Predictor for Low Alloy Steels, and its Application to Compositionally Heterogeneous Material"

<p>The complete collection of measured, modelled and analysed data associated with the work &quot;A Rapid, Open-Source CCT Predictor for Low Alloy Steels, and its Application to Compositionally Heterogeneous Material&quot; and includes:</p> <ol> <li>Measured and analysed dilatometry data.</li> <li>Optical micrographs of as-cooled microstructures.</li> <li>Microhardness measurements of the as-cooled samples.</li> <li>PAG size analysis.</li> <li>Modelled CCT data.</li> <li>SA-540 EPMA data.</li> <li>Modelled results from adapting the model to consider SA-540 chemical heterogeneity.</li> <li>Full chemical analysis for each alloy examined.</li> <li>Modelled Thermo-Calc CCT data.</li> <li>Modelled JMatPro CCT data.</li> </ol>

opencc-by-4.0Jun 2023View details →
dryad36/100

Data from: Nitrogen reduction causes shifts in winter and spring phytoplankton composition and resource use efficiency in a large subtropical lake in China

<p>Aquatic ecosystems occasionally show ecological thresholds, defined as the point at which there is a sudden shift in production, trait or biomass or where changes in an environmental driver create nonlinear responses at the ecosystem level. Previous studies of lakes have mainly focused on how reduction in particularly phosphorus (P) concentrations helps to create a shift in lakes from a turbid to a clear state (re-oligotrophication), whereas the effect of nitrogen (N) reduction is less well studied. Here, by analysing a 28-year monthly monitoring dataset (from December 1991 to November 2019) from the subtropical, large eutrophic Lake Taihu, China, we identified a sudden shift in phytoplankton biomass and composition that coincided with a pronounced change in ecosystem functions, for example, resource use efficiency (RUE), during a period with reduction of the external nutrient loading. The changes were particularly strong in winter–spring where a sudden decrease in N concentrations was accompanied by a sudden increase in diatom biomass and phytoplankton RUE and a shift from green algae and flagellate co-dominance to dominance of diatoms. Structural equation modelling further indicated that ammonium reduction led directly to increases in winter–spring phytoplankton RUE and diatom biomass. Repeated fish stocking likely also contributed to the changes in biomass and RUE. Our study provides new insight into the ecological responses to N loading reduction and contributes to the understanding of lake responses to early re-oligotrophication, which was pronounced mainly in the colder seasons in subtropical Lake Taihu, similar to findings in the early phase of re-oligotrophication in numerous temperate lakes.</p>

opencc-zeroJun 2023View details →
dryad36/100

Contents and isotope carbon compositions (δ13C) of main biochemical fractions in organs at different growth stages in Phyllostachys edulis

<p><em><span>Phyllostachys edulis</span></em><span> is a spectacularly fast-growing species that completes its height growth within </span><span>two</span><span> months after the shoot emerges </span><span>without producing leaves</span><span> (fast-growing period, FGP). This phase was considered heterotrophic, the carbon necessary for the growth being transferred from the mature culms via the rhizomes, although previous studies observed key enzymes and anatomical features related to C<sub>4</sub>-carbon fixation in developing culms. </span><span>We tested whether C<sub>4</sub>-photosynthesis or dark-CO2 fixation through anaplerotic reactions significantly contributes to the FGP, resulting in differences in the natural abundance of </span><span>δ<sup>13</sup>C</span><span> in bulk organic matter and organic compounds. Further, pulse-<sup>13</sup>CO<sub>2</sub>-labelling was performed on developing culms, either from the surface or from the internal hollow, to ascertain whether significant CO<sub>2</sub> fixation occurs in developing culms.</span><span> δ<sup>13</sup>C of</span><span> young </span><span>shoots and developing culms were higher (-26.3–-26.9‰) </span><span>compared to all organs of mature bamboos (-28.4</span><span>–</span><span>-30.1</span><span>‰). </span>Developing culms contained chlorophylls, most observed in the skin tissues. After <span>pulse-<sup>13</sup>CO<sub>2</sub>-labelling, t</span>he polar fraction extracted from the skin tissues was slightly enriched in <sup><span>13</span></sup><span>C, </span>and only a weak <sup><span>13</span></sup><span>C </span>enrichment was observed in inner tissues<span>. Main carbon source sustaining the FGP was not assimilated by the developing culm, while a </span><span>limited anaplerotic fixation of respired CO<sub>2</sub></span><span> cannot be excluded and is </span>more likely than <span>C<sub>4</sub>-</span>photosynthetic carbon fixation<span>.</span></p>

opencc-zeroJun 2023View details →
zenodo36/100

Data of "A micromechanical Mean-Field Homogenization surrogate for the stochastic multiscale analysis of composite materials failure"

<p><strong>Id</strong><br>title = "A micromechanical Mean-Field Homogenization surrogate for the stochastic multiscale analysis of composite materials failure"<br>journal = International Journal for Numerical Methods in Engineering<br>year = 2023<br>volume = 124<br>pages = 5200-5262<br>doi = 10.1002/nme.7344<br>authors = "Calleja, Juan Manuel and Wu Ling, and Nguyen, Van-Dung and Noels, Ludovic"</p> <p>If you use these data or model, we would be grateful if you could cite this above paper</p> <p><strong>Software</strong><br>Requires GMSH and Python 3 with packages numpy, matplotlib, sklearn (scikit-learn), os, pickle, scipy, pandas, cvs, math, seaborn.<br>Each folder contains readme that will help the user to navigate through the data.</p> <p>To run the model you need the open source code <a href="http://gitlab.onelab.info/cm3/cm3Libraries">https://gitlab.onelab.info/cm3/cm3Libraries </a>but you need to request access to cm3MFH as well</p> <p><strong>Directories</strong></p> <ol> <li>Main: Contains fast and easy access to the plots presented in the paper. The readme contained in this plot specifies the plots that are run with each code.</li> <li>1_SVE_Generator:Contains the files needed for the generation of the SVE, the statistical properties of the microstructure, and PLY samples for the full-field simulations, as well as the used samples</li> <li>2_Full_Field: contains the extracted data from the FF composite realizations, as well as the used random SVE geometries.</li> <li>3_Identification: Contains the identification code to find the effective parameters for each SVE realization as well as the obtained identification results.</li> <li>4_Generator: Contains the generated set of parameters for the 25 and 45 micrometer squared SVEs as well as the codes for the new data generation, the file with the generated data and the plots related with the MF-ROM random parameters and their cross-relations shown in Sections 2.5.2, 3.2.3 and 4.</li> <li>5_Tests: Contains all the information concerning the tests used for the verification of the MF-ROM and the ply and experimental compression results.</li> <li>MFH_vs_FF: Allows to easily test the inverse identification process through the use of random SVEs and verify the performance of the identified MFH parameters against its full-field counterpart.</li> </ol> <p><strong>Plot of figures</strong></p> <p>Figure 9 : Run "python plot_Gc.py" which can be found in folder Main/Full_Field_Energy<br>Figure 10: Run "python3 PDF_HIST_Gc.py", which can be found in folder Main/Histograms<br>Figure 23: Run "python3 plot.py" which can be found in folder Main/MFH_FF_Comparison<br>Figure 24: Run "python3 plot.py" which can be found in folder Main/MFH_FF_Comparison<br>Figure 27: Run "python3 Correlation_Graphs_25.py contained in folder Main/Distributions_25_Micrometer_SVE<br>Figure 29: Run "python3 PDF_HIST.py" which can be found in folder Main/Histograms<br>Figure 30: To obtain the data used in this figure, run "python3 DistanceCorrelation_25.py" which can be found in folder /4_Generator<br>Figure 31: To obtain the data used in this figure, run "python3 DistanceCorrelation_45.py" which can be found in folder /4_Generator<br>Figure 32: Run "python3 Correlation_Graphs_25.py" which can be found in folder Main/Distributions_25_Micrometer_SVE<br>Figure 33: Run "python3 Correlation_Graphs_25.py" which can be found in folder Main/Distributions_25_Micrometer_SVE<br>Figure 34: Run "python3 Correlation_Graphs_25.py" which can be found in folder Main/Distributions_25_Micrometer_SVE<br>Figure 36: Run "python3 plot_New.py" which can be found in folder Main/PlyTests<br>Figure 46: Run "python3 plot_Test.py" which can be found in folder Main/CompressionExperiment<br>Figure B3: Run "python3 MicroStrAna.py" which can be found in folder Main/MicroStructStatistics<br>Figure B4: Run "python3 MicroStrAna.py" which can be found in folder Main/MicroStructStatistics<br>Figure D5: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D6: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D7: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D8: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D9: Run "python3 PDF_HIST_B.py" which can be found n folder Main/Histograms<br>Figure D10: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D11: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D12: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D13: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure D14: Run "python3 PDF_HIST_B.py" which can be found in folder Main/Histograms<br>Figure E15: Run "python3 Correlation_Graphs_45.py" which can be found in folder Main/Distributions_45_Micrometer_SVE<br>Figure E16: Run "python3 Correlation_Graphs_45.py" which can be found in folder Main/Distributions_45_Micrometer_SVE<br>Figure E17: Run "python3 Correlation_Graphs_45.py" which can be found in folder Main/Distributions_45_Micrometer_SVE<br>Figure F18: Run "python3 plot_Convergence_25.py" which can be found in folder Main/Convergence<br>Figure F19: Run "python3 plot_Convergence_45.py" which can be found in folder Main/Convergence<br>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p> <p>&nbsp;</p>

opencc-by-4.0Jun 2023View details →
dryad36/100

Data for: A size-based perspective on the decoupling between compositional and functional changes in planktonic communities

<p><span>Recent studies have shown a decoupling in the way community composition and functions respond to environmental changes</span><span>. A common pattern observed is that aggregated functions at the community level are more stable than community composition, which is likely the result of functional compensatory dynamics driven by interspecific differences in response to environmental change. However, the mechanisms by which these patterns emerge remain largely unexplored. Here, we investigated in a mesocosm experiment for four weeks the compositional and functional responses of edible phytoplankton (&lt;64µm) and cladoceran zooplankton communities to climate warming (</span><span>a constant increase of +3.5°C plus heat wave</span><span>) and eutrophication (nutrient additions) from a size-based perspective. Our results show that warming increases small-sized taxa and decreases large-sized taxa within both phytoplankton and zooplankton community composition. We found that such opposite responses of different-sized taxa contributed to the stability of planktonic community functions and thereby resulted in a decoupling between compositional and functional changes. We also found that nutrient additions increased the abundance of all-sized algal taxa, while phytoplankton community function remained stable. Nutrient additions did not alter the zooplankton community, neither compositionally nor functionally. Under the combined stress of warming and nutrient additions, the compositional and functional responses of planktonic communities were mainly driven by warming. In a broader perspective, our findings reveal a size-dependent compensation mechanism and suggest that functional stability relies on compensatory effects among different-sized taxa, and it is therefore important that communities host a large range of taxa differing in size to withstand an increasingly more variable environment in the future.</span></p>

opencc-zeroJun 2023View details →
zenodo36/100

Effects of proline on survival, locomotion, and amino acid haemolymph composition of Osmia cornuta (Latreille, 1805)

<p>This repository contains data of survival, feed intake, behaviour and concentration of haemolymph amino acids of mason bees (<em>Osmia cornuta</em> Latreille) fed artificial diets made of sucrose only (control group) or sucrose solution enriched with 10mM proline (proline group).&nbsp;</p>

opencc-by-4.0Jul 2023View details →
zenodo36/100

Supplementary Information for "Analytical electron microscopy study of the composition of BaHfO₃ nanoparticles in REBCO films: The influence of rare-earth ionic radii and REBCO composition"

<p>Supplementary information containing image and spectroscopy data, and data-processing notebooks for the article "<strong>Analytical electron microscopy study of the composition of BaHfO<sub>3</sub> nanoparticles in REBCO films: The influence of rare-earth ionic radii and REBCO composition</strong>".</p> <p>Article (open access):&nbsp; <a href="https://doi.org/10.1039/D3MA00447C">https://doi.org/10.1039/D3MA00447C</a></p> <p>The data is sorted in folders for each figure, and the <em>Notes.pdf</em> file contains additional information about the different file formats and processing steps.</p> <p>If you have questions, you can contact Lukas Gr&uuml;newald at the E-Mail listed on the ORCID page: <a href="https://orcid.org/0000-0002-5898-0713">https://orcid.org/0000-0002-5898-0713</a></p>

opencc-by-4.0Sep 2023View details →
zenodo36/100

Volatile traps as a new supplementary method of light trap for assessing diversity and composition of Macroheterocera assemblages - RAW Data

<p>Volatile traps as a new supplementary method of light trap for assessing diversity and composition of Macroheterocera assemblages - RAW Data</p>

opencc-by-4.0Jul 2023View details →
zenodo36/100

Figure 1 in Species composition of hard ticks (Acari: Ixodidae) on domestic animals and their public health importance in Tamil Nadu, South India

Figure 1. Localities where the field work was carried out in Madurai district.

opencc-by-4.0Jan 2021View details →

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record

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