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Supplementary Material 1 : Monitoring Hydrothermal Activity Using Major and Trace Elements in Low-Temperature Fumarolic Condensates, The Case of La Soufriere de Guadeloupe Volcano, by Inostroza et al.

Supplementary Material 1 - Monitoring hydrothermal activity using major and trace elements in low-temperature fumarolic condensates, the case of La Soufriere de Guadeloupe volcano, by Manuel Inostroza, Séverine Moune, Roberto Moretti, Vincent Robert, Magali Bonifacie, Elodie Chilin-Eusebe, Arnaud Burtin, Pierre Burckel

Additional Material for Debiasing architectural decision-making: a workshop-based training approach

This additional material was created to enable full replication of the experiment described in the paper: "Klara Borowa, Maria Jarek, Gabriela Mystkowska, Weronika Paszko and Andrzej Zalewski: Debiasing architectural decision-making: a workshop-based training approach". The paper was accepted for publication at ECSA 2022 (The 16th European Conference on Software Architecture). The folder contains the following files: Coding-details.xlsx - the coding scheme, as well as coding results. Contains all code counts for each team participating in the experiment. Experiment-meeting-plan.pdf - contains the plan for the 3-hour meeting during which the experiment was conducted, as well as a timetable of when each meeting took place and who organised it. Debiasing-workshop-slides.pdf - slides used during the debiasing workshop. Debiasing-workshop-plan.pdf - detailed instruction for workshop organisers, what should be said and done during the workshop. Participants_questionnaire_and_results.xlsx - questionnaire questions used to obtain information about participants, as well as questionnaire results for all 44 participants.

Effect of different feeding substrates on the production of in-sect-derived frass fertilizers for effective alleviation of ammonium (NH4+) toxicity - Raw Data and Supplementary Materials

Raw data and Supplementary Materials for the submitted Article Titled: "Effect of different feeding substrates on the production of in-sect-derived frass fertilizers for effective alleviation of ammonium (NH4+) toxicity". Submitted to Agronomy-Basel MDPI.

opencc-zeroJun 2022View details →

dryad36/100

Supplementary material for: Impact of ghost introgression on coalescent-based species tree inference and estimation of divergence time

The species studied in any evolutionary investigation generally constitute a small proportion of all the species currently existing or that have gone extinct. It is therefore likely that introgression, which is widespread across the tree of life, involves "ghosts," i.e., unsampled, unknown, or extinct lineages. However, the impact of ghost introgression on estimations of species trees has rarely been studied and is poorly understood. Here, we use mathematical analysis and simulations to examine the robustness of species tree methods based on the multispecies coalescent model to introgression from a ghost or extant lineage. We found that many results originally obtained for introgression between extant species can easily be extended to ghost introgression, such as the strongly interactive effects of incomplete lineage sorting (ILS) and introgression on the occurrence of anomalous gene trees (AGTs). The relative performance of the summary species tree method (ASTRAL) and the full-likelihood method (*BEAST) varies under different introgression scenarios, with the former being more robust to gene flow between non-sister species whereas the latter performing better under certain conditions of ghost introgression. When an outgroup ghost (defined as a lineage that diverged before the most basal species under investigation) acts as the donor of the introgressed genes, the time of root divergence among the investigated species generally was overestimated, whereas ingroup introgression, as commonly perceived, can only lead to underestimation. In many cases of ingroup introgression that may or may not involve ghost lineages, the stronger the ILS, the higher the accuracy achieved in estimating the time of root divergence, although the topology of the species tree is more prone to be biased by the effect of introgression.

Supplementary Material for Use of Journey Maps and Personas in Software Requirements Elicitation

This repository contains supplementary material for the "Use of Journey Maps and Personas in Software Requirements Elicitation" article. Context: Requirements elicitation is a fundamental step in a software development process since it is at this stage that the software begins to be designed. In some situations, the problems related to the failure of the software development project are due to an incomplete requirements elicitation, resulting in solutions that do not understand all the necessary functionalities or do not incorporate innovation. Despite the various techniques offered by Requirements Engineering, situations such as the growing application market and the need for innovation further increase the importance of understanding the user's different needs. Objective: In this paper, we investigated how the journey map and personas techniques are being used in requirements elicitation in both the literature and the industry, along with the advantages, disadvantages, and challenges of using these techniques. Method: We conducted systematic literature review to identify the personas and journey map techniques used in requirements elicitation in the literature and industry. In addition, we conducted a survey with 27 practitioners (software developers, users, and managers) to investigate their perceptions of the use of journeys map and personas techniques in the requirements elicitation phase. Results: Twenty-three primary studies were identified that address journey map and personas techniques in software requirements elicitation. In addition, most respondents stated that using these techniques facilitates understanding the requirements, providing better integration, collaboration, and leveling of knowledge among the members of the software development teams. Conclusions: Our findings allow us to conclude that most of the software developers, users, and managers that participated in the survey consider that the journey map and personas techniques are effective in helping understand the software requirements to be developed by the development teams.

opencc-zeroJun 2022View details →

FIG. 1 in New material of Incadelphys antiquus (Pucadelphyda, Metatheria, Mammalia) from the early Palaeocene of Bolivia reveals phylogenetic affinities with enigmatic North and South American metatherians

FIG. 1. — Dental terminology (redrawn and modified from Davis 2007).

Supplementary material - Fingerprint multiplex CARS at high speed based on supercontinuum generation in bulk media and deep learning spectral denoising

Supplementary material

opencc-by-4.0Feb 2022View details →

Funding Covid-19 research: Insights from an exploratory analysis using open data infrastructures - Supplementary material

This dataset contains supplementary material for the paper 'Funding Covid-19 research: Insights from an exploratory analysis using open data infrastructures' by Alexis-Michel Mugabushaka, Nees Jan van Eck, and Ludo Waltman. <ul> <li>supplementary_material_1_dataset.ods: Dataset of Covid-19 publications.</li> <li>supplementary_material_2_sample.ods: Samples of publications used to assess the accuracy of funding data in the different databases.</li> <li>supplementary_material_3_tables_and_figures.ods: Statistics underlying the tables and figures presented in the paper.</li> </ul>

Research data supporting: "Classifying soft self-assembled materials via unsupervised machine learning of defects"

Research data supporting: "Classifying soft self-assembled materials via unsupervised machine learning of defects". The root folder contains 5 folders: <ol> <li>FIBERS</li> <li>MEMBRANES_and_MICELLES</li> <li>NANOPARTICLES</li> <li>COMPARISON</li> <li>paper_images</li> </ol> The folders 1. to 3. contain the data for every soft-matters architecture used to produce the results discussed in the main paper. Each of these folders contain additional sub-fordels: TRAJ, SOAP, PCA, CLUSTERING, containing the files discussed in the main paper. Folder 4. contains the data of the comparison between different classes of materials (SOAP, PCA, and CLUSTERING sub-folders). Folder 5. contains the images that are showed in the main paper and in the Supporting Information.

opencc-by-4.0Aug 2022View details →

Supplementary material for "Sounding Obstacles for Social Distance Sonification".

Supplementary material for the paper "Sounding Obstacles for social distance Sonification": Three videos (FmodI, FmodD, and NoFS) demonstrating three experimental conditions and 16 simulated videos (DD 01 - SS 06) presenting scenarios used in the experiment.

Supplementary material of the study "Flying over Brazilian Organizations with Zeppelin: A Preliminary Panoramic Picture of Continuous Software Engineering"

Supplementary Material Context: Software organizations have faced several challenges, such as the need for faster deliveries, frequent changes in requirements, lower tolerance to failures and the need to adapt to contemporary business models. Agile practices have allowed organizations to shorten development cycles and increase customer collaboration. However, this has not been enough. Organizations should evolve to continuous and data-driven development in a continuous software engineering approach. Continuous Software Engineering (CSE) consists of a set of practices and tools that support a holistic view of software development with the purpose of making it faster, iterative, integrated, continuous and aligned with business. Implementing CSE requires changes in the organization’s culture, practices and structure, which may not be easy. Objective:  We aim to provide a preliminary picture of CSE adoption in Brazilian software organizations. Method: We adapted and used Zeppelin, a diagnostic instrument of CSE adoption based on the Stairway to Heaven Model (StH), to perform a survey with 28 Brazilian organizations aiming at investigating the adoption of CSE practices. Results: The results indicate that organizations have better addressed agile and continuous deployment practices than the ones related to continuous integration and continuous experimentation, but this scenario changes a bit depending on the organization type. The results also show that CSE adoption has been heterogeneous, but there are patterns in the adoption of some practices. Conclusion: Although the StH model proposes a sequential and evolutionary path for CSE adoption, organizations have not always followed that path systematically. There are indeed CSE practices that depend on others and thus contribute to sequential implementation. However, organizations tend to adopt the practices gradually, covering different stages, and evolving according to the organization needs. This package contains supplementary material of the study performed to investigate the adoption of CSE practices in Brazilian organizations. It contains: <ul> <li>The questionnaire used to collect data (Google Forms format) – in Portuguese only (available at https://forms.gle/oWpiQ1VJ8oywj4sXA)</li> <li>The questionnaire used to collect data (pdf format)  </li> <li>A spreadsheet containing raw data, some tables and graphs</li> <li>Python Notebook files for showing exploratory analysis (using Spearman Coefficient) </li> </ul> Please cite: Paulo Sérgio dos Santos Júnior, Monalessa P. Barcellos, Fabiano B. Ruy, and Moisés S. Omêna. 2022. Flying over Brazilian Organizations with Zeppelin: A Preliminary Panoramic Picture of Continuous Software Engineering. In 36th Brazilian Symposium on Software Engineering (SBES ’22), October 21–23, 2022, Uberlândia, Brazil.

Supplementary material of the study "Flying over Brazilian Organizations with Zeppelin: A Preliminary Panoramic Picture of Continuous Software Engineering"

Supplementary Material Context: Software organizations have faced several challenges, such as the need for faster deliveries, frequent changes in requirements, lower tolerance to failures and the need to adapt to contemporary business models. Agile practices have allowed organizations to shorten development cycles and increase customer collaboration. However, this has not been enough. Organizations should evolve to continuous and data-driven development in a continuous software engineering approach. Continuous Software Engineering (CSE) consists of a set of practices and tools that support a holistic view of software development with the purpose of making it faster, iterative, integrated, continuous and aligned with business. Implementing CSE requires changes in the organization’s culture, practices and structure, which may not be easy. Objective:  We aim to provide a preliminary picture of CSE adoption in Brazilian software organizations. Method: We adapted and used Zeppelin, a diagnostic instrument of CSE adoption based on the Stairway to Heaven Model (StH), to perform a survey with 28 Brazilian organizations aiming at investigating the adoption of CSE practices. Results: The results indicate that organizations have better addressed agile and continuous deployment practices than the ones related to continuous integration and continuous experimentation, but this scenario changes a bit depending on the organization type. The results also show that CSE adoption has been heterogeneous, but there are patterns in the adoption of some practices. Conclusion: Although the StH model proposes a sequential and evolutionary path for CSE adoption, organizations have not always followed that path systematically. There are indeed CSE practices that depend on others and thus contribute to sequential implementation. However, organizations tend to adopt the practices gradually, covering different stages, and evolving according to the organization needs. This package contains supplementary material of the study performed to investigate the adoption of CSE practices in Brazilian organizations. It contains: <ul> <li>The questionnaire used to collect data (Google Forms format) – in Portuguese only (available at https://forms.gle/oWpiQ1VJ8oywj4sXA)</li> <li>The questionnaire used to collect data (pdf format)  </li> <li>A spreadsheet containing raw data, some tables and graphs</li> <li>Python Notebook files for showing exploratory analysis (using Spearman Coefficient) </li> </ul> Please cite: Paulo Sérgio dos Santos Júnior, Monalessa P. Barcellos, Fabiano B. Ruy, and Moisés S. Omêna. 2022. Flying over Brazilian Organizations with Zeppelin: A Preliminary Panoramic Picture of Continuous Software Engineering. In 36th Brazilian Symposium on Software Engineering (SBES ’22), October 21–23, 2022, Uberlândia, Brazil.

Supplementary material for 'Deployment pipeline: a review, a recommended model and its usage'

This is the replication package of the paper "Deployment pipeline: a review, a recommended model and its usage". This replication package contains two .csv files. The file named SLR-initial-list.csv contains the initial list of papers retrieved from having applied a single iteration of forward snowballing using the work of Hilton et al. [1] as starting point.   The file named SLR-final-corpus.csv contains the final corpus resulting from having the study selection step as reported in the paper. This final corpus contains 32 papers.   Reference: [1] Michael Hilton, Timothy Tunnell, Kai Huang, Darko Marinov, and Danny Dig. 2016. Usage, Costs, and Benefits of Continuous Integration in Open-Source Projects. In Proceedings of the 31st IEEE/ACM International Conference on Auto- mated Software Engineering (Singapore, Singapore) (ASE 2016). Association for Computing Machinery, New York, NY, USA, 426–437. https://doi.org/10.1145/ 2970276.2970358

Data for Functional Group Pair Distance Based Descriptor for Isomerisation in Porous Molecular Framework Materials

This is a dataset of isomer structure files for pore topology: Tri2Di3, Tri4Di6, Tri4-2Di6,Tri6Di9, Tet2Di4, Tet3Di3, Tet4-4Di8, Tet5Di10, and Tet6Di12.  All.tar.bz2 contains all pore topologies, the total disk space after unzipping the bundle is 1.8 Gb. The total disk space for pore Tet6Di12 alone is 1.5Gb. The base structure of all pore topologies are constructed using a metal node of radius ~5 (represented by a Zirconium atom) and a benzene linker, while the functional group is represented by a Nitrogen atom.

opencc-by-4.0Apr 2022View details →

Supplementary materials of "Anticausatives in Classical Armenian"

Supplementary materials of: Petr A. Kocharov. 2022. Anticausatives in Classical Armenian. Journal of Historical Linguistics. The package includes two wordlists: 1) the complete list of morphological causatives with the suffix -oyc'/uc'- attested in the Armenian Bible; 2) the complete list of the base verbs of the -e-, -i-, -u-, and -a- conjugations attested in the Armenian Bible. The first wordlist additionally contains the base verbs corresponding to the causatives and relevant lexicosyntactic information on these base verbs (the base verbs marked by an asterisk are not attested in the Bible). Both lists are based on the digital concordance of the Armenian Bible available at https://arak29.org, which reproduces the Constantinople 1895 edition.

Supplementary materials for "Modeling the geographical distributions of Chordodes formosanus and its mantis hosts in Taiwan, with considerations for their niche overlaps"

Species distribution model (SDM) has conventionally been used for evaluating the distribution of single species, but comparisons between different SDMs are possible for evaluating the geographic similarity between taxa. Here we used a parasite and host system to infer the geographic overlaps between species with tight biological interaction, e.g. parasites and their obligate host; specifically, we used the horsehair worm Chordodes formosanus and its three different mantis hosts to study the extent of niche overlap. We retrieved presence points for the host species and the parasite and we built the SDMs with MaxEnt implemented in ENMeval by using selected bioclim variables (based on VIF values) at a 30 seconds scale. The models showed that the hosts and parasite do not occur in the high elevation areas in Taiwan, which was expected based on their biology. Interestingly, the predicted parasite distribution included areas without collection records, implying local extinction or sampling bias. We subsequently evaluated niche overlap between hosts and the parasite according to five similarity indices (Schoener’s D, I statistic, relative rank, Pearson correlation coefficient and the rank correlation coefficient rho). Our models showed high similarity of SDM predictions between hosts and the parasite. There were differences among metrics about which host shared the highest similarity with the parasite, but the majority of the results indicated that the Japanese boxing mantis has the highest niche similarity with the horsehair worm. The choice of the niche overlap metric to use can be seen as a way to get informations on the parasite’s ecology, which can be important for endangered species SDMs are reliable tools for host and parasite conservation management and could help to improve biological and ecological knowledge of parasites.

opencc-by-nc-sa-4.0May 2021View details →

A Theory of Scrum Team Effectiveness: Dataset and Supplementary Materials

This bundle contains supplementary materials for an upcoming academic publication A Theory of Scrum Team Effectiveness, by Christiaan Verwijs and Daniel Russo. Included in the bundle are the dataset, SPSS syntaxes, and model definitions (AMOS). This replication package is made available by C. Verwijs under a "Creative Commons Attribution Non-Commercial Share-Alike 4.0 International"-license (CC-BY-NC-SA 4.0). About the dataset The dataset (SPSS) contains anonymized response data from 4.940 respondents from 1.978 Scrum Teams that participated from the <a href="https://scrumteamsurvey.org">https://scrumteamsurvey.org</a>. Data was gathered between June 3, 2020, and October 13, 2021. We cleaned the individual response data from careless responses and removed all data that could potentially identify teams, individuals, or their parent organizations. Because we wanted to analyze our measures at the team level, we calculated a team level mean for each item in the survey. Such aggregation is only justified when at least 10% of the variance exists at the team level (Hair, 2019), which was the case (ICC = 51%). Because the percentage of missing data was modest, and to prevent list-wise deletion of cases and lose information, we performed EM maximum likelihood imputation in SPSS. The dataset contains question labels and answer option definitions. To conform to the privacy statement of scrumteamsurvey.org, the bundle does not include individual response data from before the team-level aggregation. About the model definitions The bundle includes definitions for Structural Equation Models (SEM) for AMOS. We added the four iterations of the measurement model, four models used to perform a test for common method bias, the final path model, and the model used for mediation testing. Mediation testing was performed with the procedure outlined by Podsakoff (2003). Mediation testing was performed with the <a href="http://statwiki.gaskination.com/index.php?title=CFA">"Indirect Effects" plugin</a> for AMOS by James Gaskin. About the SPSS syntaxes The bundle includes the syntaxes we used to prepare the dataset from the raw import, as well as the syntax we used to generate descriptives. This is mostly there for other researchers to verify our procedure.

Finite-strain Visco-elastic Visco-plastic model identification of PA12 material printed along different directions

The data provide the identification of PA12 bulk material for a finite-strain visco-elastic-visco-plastic (VE-VP) model printed along two directions. Tests were conducted in L. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus, Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behaviour, Polymer Testing 110 (2022) 107556: <a href="https://doi.org/10.1016/j.polymertesting.2022.107556">https://doi.org/10.1016/j.polymertesting.2022.107556</a> (in Open access), see also <a href="http://dx.doi.org/10.5281/zenodo.6136935">http://dx.doi.org/10.5281/zenodo.6136935</a> (in Open access) Material model follows V. D. Nguyen, F. Lani, T. Pardoen, X. Morelle, L. Noels, A large strain hyperelastic viscoelastic-viscoplastic-damage constitutive model based on a multi-mechanism non-local damage continuum for amorphous glassy polymers. International Journal of Solids and Structures 96 (2016): 192-216; <a href="https://dx.doi.org/10.1016/j.ijsolstr.2016.06.008">https://dx.doi.org/10.1016/j.ijsolstr.2016.06.008</a>, Open access:  <a href="https://orbi.uliege.be/handle/2268/197898">https://orbi.uliege.be/handle/2268/197898</a>. The model <ul> <li>Is implemented as a cross platform UMAT subroutine that is openly available on <a href="https://gitlab.uliege.be/moammm/moammmpublic/-/tree/master/code/MaterialModels/FiniteStrain/Finite_VEVP">https://gitlab.uliege.be/moammm/moammmpublic/-/tree/master/code/MaterialModels/FiniteStrain/Finite_VEVP</a> (Licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) (<a href="https://creativecommons.org/licenses/by/4.0">https://creativecommons.org/licenses/by/4.0</a>).) and referenced on the project web-site <a href="https://www.moammm.eu/index.php/developed-code/">https://www.moammm.eu/index.php/developed-code/</a>.</li> <li>The model is also implemented at the cm3 laboratory, who provides efficient algorithms for homogenisation implemented in a parallel setting in the open source finite element code base on <a href="http://gmsh.info/">Gmsh</a>. In order to have access to the sources follows <a href="https://www.moammm.eu/index.php/developed-code/">https://www.moammm.eu/index.php/developed-code/</a>.</li> </ul> If you use these data or model, we would be grateful if you could cite the related papers: <ul> <li>L. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus, Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behaviour, Polymer Testing 110 (2022) 107556: https://doi.org/10.1016/j.polymertesting.2022.107556 (in Open access)</li> <li>Data of “. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus, Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behaviour, Polymer Testing 110 (2022) 107556” http://dx.doi.org/10.5281/zenodo.6136935 (in Open access)</li> <li>V. D. Nguyen, F. Lani, T. Pardoen, X. Morelle, L. Noels, A large strain hyperelastic viscoelastic-viscoplastic-damage constitutive model based on a multi-mechanism non-local damage continuum for amorphous glassy polymers. International Journal of Solids and Structures 96 (2016): 192-216; https://dx.doi.org/10.1016/j.ijsolstr.2016.06.008, Open access: https://orbi.uliege.be/handle/2268/197898</li> </ul> This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 862015

opencc-by-4.0Jul 2021View details →

The dataset for an article - An Evaluation of 3D-Printed Materials' Structural Properties Using Active Infrared Thermography and Deep Neural Networks Trained on the Numerical Data

Dataset used in the research presented in the article: Szymanik, Barbara. 2022. "An Evaluation of 3D-Printed Materials’ Structural Properties Using Active Infrared Thermography and Deep Neural Networks Trained on the Numerical Data" Materials 15, no. 10: 3727. https://doi.org/10.3390/ma15103727 The database in the .mat (matlab) format contains arrays of double type related to: A - original thermograms obtained for the plate made with the 3D printing technique Ar - thermograms with ROI included FITorg - approximation of original thermograms ImDiff, ImInt, ImProp - data obtained after subtracting the approximation.