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Fig. 2 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 2. Light micrographs of barcoded Quadrulella variabilis sp. nov. cells: (a) cell Q-54; (b) cell Q-48; (c) cell Q-52; (d) cell Q-101; (e) cell Q-98; (f) cell Q-53. Scale bars = 10 µm.
Fig. 9 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 9. Maximum likelihood bootstrap consensus tree of 34 Quadrulella COI sequences and 71 other hyalosphenid sequences based on a 684- nucleotide position alignment. The numbers along the branches represent respectively the bootstrap values obtained by maximum-likelihood analysis, posterior probability values obtain by Bayesian analysis and parsimony scores obtain by maximum parsimony analysis. Only values above 50/0.50/50 are shown. The tree is rooted with the Padaungiella–Alocodera group. The scale bar corresponds to the mean number of nucleotide substitutions per site on the respective branch.
Fig. 8 in Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes
Fig. 8. Scanning electron micrographs illustrating morphological variations within the Quadrulella cf. symmetrica morphospecies. (a) Q. cf. symmetrica_BG from Bulgaria; (b) Q. cf. symmetrica_CA from Canada; (c) Q. cf. symmetrica_CH from Switzerland; (d) Q. variabilis with a long neck (ex: Q. longicollis) from Bulgaria. Scale bars = 20 µm. Image from Kosakyan et al. (2012) with permission from the editor.
FIGURE 2 in Identifying Neogobius species from the southern Caspian Sea by otolith shape (Teleostei: Gobiidae)
FIGURE 2. SEM micrograph of sagittal otolith of a 60 mm specimen of Neogobius pallasi and its features.
FIGURE 3 in Identifying Neogobius species from the southern Caspian Sea by otolith shape (Teleostei: Gobiidae)
FIGURE 3. Sagittal otoliths of: A–B: N. pallasi (TL: 95 mm); A, male; B, female. C–D: N. caspius (TL: 95 mm); C, male; D, female. E–F: N. melanostomus (TL: 95 mm); E, male; F, female.
FIGURES 10–16. Body shape and proportions. Fig. 10 in The Afrotropical genus Rhinolaetia Schouteden, 1965 and its systematic position within Scutelleridae (Hemiptera: Heteroptera)
FIGURES 10–16. Body shape and proportions. Fig. 10, Xerobia sculpturata (Stål, 1858); Fig. 11, Hotea subfasciata (Westwood, 1837); Fig. 12, Irochrotus montandoni Schouteden, 1903; Fig. 13, Odontoscelis dorsalis (Fabricius, 1798); Fig. 14, Alphocoris lixoides Germar, 1839; Fig. 15, Urothyreus horvathianus Schouteden, 1908; Fig. 16 Cryptacrus comes (Fabricius, 1803).
FIGURE 4. Gonapsis shapes. a in Apertochrysa (Neuroptera: Chrysopidae): A heterogeneric phantom?
FIGURE 4. Gonapsis shapes. a: Icon for the shape characteristic of the alcestes-group, one of the four large species-groups in the Pseudomallada complex (Duelli et al. 2016). b and c: Gonapsis of two males of Apertochrysa edwardsi (Western Australia). d and e: Gonapsis of two males of A. eurydera (Ghana), a species in the alcestes-group.
Visual reinforcement shapes eye movements in visual search
<p>Dataset from the following publication:</p> <p>Paeye, C., Schütz, A. C., & Gegenfurtner, K. R. (2016). Visual reinforcement shapes eye movements in visual search. Journal of Vision, 16(10):15, 1–15, <a>doi:10.1167/16.10.15 <span></span></a><a></a></p>
and metatarsal trichobothria as well as the bristles and the tibial and metatarsal bristleshaped hairs are drawn but no normal hairs; 6) retrolateral aspect of the left retroclaw IV; 7) genital area in front of the epigastral furrow in which no epiandrous gland spigots are recognizable. Not all of the hairs anteriorly of the pit are drawn; 8) outline of the anterior spinnerets, ventral aspect; 9) retrolateral aspect of the right pedipalpus; 10) prolateral aspect of the right pedipalpus. Only two of the long retrolateral bristle-shaped cymbial hairs are drawn; 11) ventral aspect of the right pedipalpus; 12) slightly different retroventral aspects of the distal part of the right pedipalpus. C = conductor, E = embolus, M = median apophysis, O = proventral-distal outgrowth of the pedipalpal tibia. Scale bars 0.5 mm in figs. 1-2 and 5, 0.05 in fig. 4 and 6, 0.1 in fig. 7, 0.2 in the remaining figs; in On European Spiders Of The Nominal Families Liocranidae, Miturgidae And Zoridae (Araneae), With Descriptions Of New Taxa
and metatarsal trichobothria as well as the bristles and the tibial and metatarsal bristleshaped hairs are drawn but no normal hairs; 6) retrolateral aspect of the left retroclaw IV; 7) genital area in front of the epigastral furrow in which no epiandrous gland spigots are recognizable. Not all of the hairs anteriorly of the pit are drawn; 8) outline of the anterior spinnerets, ventral aspect; 9) retrolateral aspect of the right pedipalpus; 10) prolateral aspect of the right pedipalpus. Only two of the long retrolateral bristle-shaped cymbial hairs are drawn; 11) ventral aspect of the right pedipalpus; 12) slightly different retroventral aspects of the distal part of the right pedipalpus. C = conductor, E = embolus, M = median apophysis, O = proventral-distal outgrowth of the pedipalpal tibia. Scale bars 0.5 mm in figs. 1-2 and 5, 0.05 in fig. 4 and 6, 0.1 in fig. 7, 0.2 in the remaining figs;
Input and output used in publication "Glacial isostatic adjustment shapes proglacial lakes over glacial cycles"
<p>Here we provide the input ice history and topography used for the modeling along with the output sea level and proglacial lake volume & geometries. Please see the read.me file and publication for details. Note that version 1 had incorrect files saved for some of the output, including the default run LAM_PC. Please use version 2 when recreating our results. </p>
Wind Effects on Non-Standard Shapes and Structures
<h1>Dataset Description</h1> <p>The data contained in this package aims to act as a open-access database with pressure maps, alongside proper description of the situations considered. In addition, the data within this package aims to contribute to the development and validation of an open-source numerical project with predictive capabilities. The study replicates various complex shapes of membrane structures for testing under Atmospheric Boundary Layer (ABL) flow, Tornadic-like flow, and Downburst-like flow at the Wind Engineering, Energy, and Environment (WindEEE) research facility. Prestressed membrane structures are lightweight structures with a multitude of application areas from small shading devices and façade elements to wide-span roofs covering sport stadia and other leisure facilities. Due to their architectural appeal and the ability to cover large areas with minimal material usage, they represent a highly resource-efficient category of engineering structures.</p> <p> </p> <div> <h2>S1. Wind Field Characterization</h2> </div> <div> <p>The purpose of this specimen was to develop and identify an ABL profile that corresponds to the 1:25 model scale. Tests were performed with various turbulence levels created using a combination of roughness elements, spires, and a trip. For each test, 3-dimensional point-based velocity measurements were taken with TFI Cobra Probes covering a range of heights.</p> <h3>E1. Atmospheric Boundary Layer (ABL) development</h3> <div> <p>Given the model scale, size, and region of installation, ABL flows were tested to develop an accurate simulation for testing the membrane structure models under. Tests were performed with both low-speed and high-speed configurations. Each configuration involved measurements with various turbulence production methods such as roughness elements, spires, trip, and fan speed variation.</p> <p> </p> <div> <h2>S2. M1 (Hyperbolic Paraboloid) Pressure Model</h2> </div> <div> <p>The purpose of this specimen was to test the M1, doubly, curved geometry at a scale of 1:25 under ABL, Downburst, and Tornado winds. The full-scale size of the geometry is 6 x 6 x 5m and at a scale of 1:25 the tested model is 24 x 24 x 20cm where the canopy itself is 8cm tall beginning 12cm from the ground. The canopy is 1cm thick overall (offset 0.5cm above and below the original surface geometry) with a 0.6cm cavity in between for pressure tubing.</p> </div> </div> </div> <h3>E1. ABL Loading</h3> <div> <p>This test involved the M1 model described above subjected to low-speed ABL, and high-speed ABL. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <h3>E2. Downburst Loading</h3> <div> <p>This test involved the M1 model tested under downburst-like flow loading conditions in three configurations where the model is offset from the center of the turntable to achieve 3 r/D values: 0.8, 1.0, and 1.2 (in the -x direction) (offset 0.65m, 1.29m and 1.95m respectively).</p> <h3>E3. Tornado Loading</h3> <div> <p>This test involved the M1 model tested under tornado-like flow loading conditions in two configurations where the model is offset from the center of the turntable by 0cm and 25cm (in the -x direction).</p> </div> </div> <p> </p> <div> <h2>S3. M2 (RidgeValley) Pressure Model</h2> </div> <div> <p>The purpose of this specimen was to test the M2 (RidgeValley) doubly curved geometry at a scale of 1:25 under ABL winds. The equilibrium shape of the M2 (RidgeValley) can be determined via form finding for a pre-stress ratio of 4 (e.g. kN/m) as an isotropic membrane pre-stress to 30 (e.g. kN) in the edge and ridge cables, with fixed support points. The full-scale size of the geometry is 6 x 6 x 5m and at a scale of 1:25 the tested model is 24 x 24 x 20cm where the canopy itself is 8cm tall beginning 12cm from the ground. The canopy is 1cm thick overall (offset 0.5cm above and below the original surface geometry) with a 0.6cm cavity in between for pressure tubing.</p> <h3>E1. ABL Loading</h3> <div> <p>This test involved the model described above subjected to low-speed ABL, and high-speed ABL. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <p> </p> <div> <h2>S4. M3 (Arch-Supported) Pressure Model</h2> </div> <div> <p>The purpose of this specimen was to test the M3 (Arch-Supported) doubly curved geometry at a scale of 1:25 under ABL winds. The equilibrium shape of the M3 can be determined via form finding for a pre-stress ratio of 4 (e.g. kN/m) as an isotropic membrane pre-stress to 30 (e.g. kN) in the edge cables, with fixed line supports at the arches. The arch geometry is defined as a NURBS curve (p=3, CPs at (0,0,0), (0,2,2.65), (0,4,2.65), (0,6,0), knot vector (0,0,0,1,1,1)). The full-scale size of the geometry is 6 x 6 x 5m and at a scale of 1:25 the tested model is 24 x 24 x 20cm where the canopy itself is 8cm tall beginning 12cm from the ground. The canopy is 1cm thick overall (offset 0.5cm above and below the original surface geometry) with a 0.6cm cavity in between for pressure tubing.</p> <h3>E1. ABL Loading</h3> <p>This test involved the model described above subjected to low-speed ABL, and high-speed ABL. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <p> </p> <h2>S5. M4 (Cone) Pressure Model</h2> <div> <p>The purpose of this specimen was to test the M4 (Cone) doubly curved geometry under ABL winds in an isolated, 1x3 row array, and a 3x3 square array configuration. The equilibrium shape of the M4 can be determined via form finding for an isotropic membrane pre-stress, with fixed supports at top and bottom circles. The support circle radii are 0.8m and 4.24m (full-scale). The form found shapes are then intersected at a 6m distance in order to generate straight edges for closed array geometries. The full-scale size of the isolated geometry is 6 x 6 x 5m and at a scale of 1:25 the tested model is 24 x 24 x 20cm where the canopy itself is 8cm tall beginning 12cm from the ground. The canopy is 1cm thick overall (offset 0.5cm above and below the original surface geometry) with a 0.6cm cavity in between for pressure tubing.</p> <h3>E1. ABL Loading Stand Alone</h3> <p>This test involved the model described above subjected to low-speed ABL, and high-speed ABL. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <h3>E2. ABL Loading Row (1 x 3) Array</h3> <div> <p>This test involved the M3 model plus 8 similarly shaped, adjacent dummy models arranged in 3 different configurations subjected to low-speed ABL, and high-speed ABL. The configurations include of a 1x3 line relative to the main pressure model. In the configurations, the pressure model is located: at the center of the line, and at the corner of the line. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <h3>E3. ABL Loading Square (3 x 3) Array</h3> <div> <p>This test involved the M3 model plus 2 similarly shaped, adjacent dummy models arranged in 2 different configurations subjected to low-speed ABL, and high-speed ABL. The configurations include different locations of the main pressure model within a 3x3 square array. In the configurations, the pressure model is located: at the center of the grid, at the corner of the grid, and at the center edge of the grid. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <p> </p> <h2>S6. M5 (Umbrella) Pressure Model</h2> <div> <p>The purpose of this specimen was to test the M5 (Umbrella) doubly curved geometry at a scale of 1:25 under ABL winds. The equilibrium shape of the M5 can be determined via formfinding for a pre-stress ratio of 4 (e.g. kN/m) as an isotropic membrane pre-stress to 30 (e.g. kN) in the edge cables, with fixed line supports at the bottom circle (radius of 0.8m in full scale) and point supports at the top corners. The full-scale size of the geometry is 6 x 6 x 5m and at a scale of 1:25 the tested model is 24 x 24 x 20cm where the canopy itself is 8cm tall beginning 12cm from the ground. The canopy is 1cm thick overall (offset 0.5cm above and below the original surface geometry) with a 0.6cm cavity in between for pressure tubing.</p> <h3>E1. ABL Loading</h3> <p>This test involved the model described above subjected to low-speed ABL, and high-speed ABL. The model was tested every 10° between 0 and 180° plus a 45° angle of attack.</p> <p> </p> </div> </div> </div> </div> </div> </div> </div> </div>
Family life and cadmium ingestion independently shape offspring microbiomes in a subsocial insect
<h1>READ ME</h1> <p>This repositery contains all dataset that allow to reproduce this study (16S rRNA sequences in .fastq format, the R script and the informative file related with the samples (env_succession.txt). It also contains Supplemental material to complete the related manuscript.</p> <h2>1) The file "cd_data.txt" </h2> <p>It contains the informations regarding the samples. The description of the variables follows:</p> <ul> <li>ID: The identifiant of the sample (host)</li> <li>Clutch: The name of the family</li> <li>Treatment: The cadmium doses that had been administered (0, 25 or 100 mg/L)</li> <li>Group_nymph: social environment of the nymph where nymph are either isolated, with sibling (10 nymphs) or in family (10 nymphs with their mother).</li> </ul> <h2>2) The file "Cadmium_script.R" </h2> <p>This script allows to perform all the bioinformatical process and analyses that were made for this study. It was made on R version 4.4. This script needs the source code provided by the "<strong>make_biom.R</strong>" code that will need to be downloaded in the "reference_database" the script creates (but see the Cadmium_script).</p> <h2>3) The RData objects</h2> <p>We publish the R objects (phyloseq objects) that allow to perform all statistical analyses from the initial object "<strong>ps_proka.RData</strong>" or directly after the core calculation "<strong>core.RData</strong>". It avoids to perform all bioinformatical steps to process the sequences.</p> <h2>4) The file "R1R2.zip"</h2> <p>This folder zip contains all sequence at fastq format. These sequences are from the V3-V4 of the 16S rRNA genes sequenced by Illumina MiSeq 2x250 bp.</p> <h2>5) The file "Supplemental Material.pdf"</h2> <p>This document contains all supplemental tables and figures related with our study. Specifically,</p> <ul> <li><strong>Table S1:</strong> Results of the DESeq2 analysis regarding the effects of the cadmium ingestion and the social environment.</li> <li><strong>Figure S1: </strong>Electrophoresis gel (agarose 1.5%) of the 16S rRNA amplicons.</li> <li><strong>Figure S2: </strong>Species-Abundance Distribution (SAD) patterns for the microbial ASVs of the European earwig nymphs.</li> <li><strong>Figure S3:</strong> Rarefaction curves for each nymph microbiome, depending on its social environment.</li> <li><strong>Figure S4:</strong> <span lang="EN-GB">Alpha and beta-diversity</span><span lang="EN-GB"> of the nymph microbiomes.</span></li> </ul>
The dataset of the role of dormant propagule banks in shaping eco-evolutionary dynamics of community assembly
<p>Here is the dataset of the simulation data of the role of dormant propagule banks in shaping eco-evolutionary dynamics of community assembly. </p>
The role of abiotic and biotic factors in the unequal body shape diversification of a Gondwanan fish radiation (Otophysi:Characiformes)
<p>Understanding why some clades diversify greatly, while others do not, is a major goal of evolutionary biology. Both abiotic and biotic factors are important in driving unequal morphological diversity across the tree of life. However, few studies have quantified how differences in abiotic habitat and community composition influence unequal morphological diversification in spatiotemporally diffuse radiations. Here we use geometric morphometrics, abiotic habitat data generated by Geographic Information Systems (GIS) analyses, evolutionary simulations, and phylogenetic comparative methods to determine whether random evolution, habitat variation, competition for niches or a combination of factors influenced the unequal body shape diversity of a Gondwanan freshwater fish radiation. We find that neotropical characiform lineages, which exhibit substantially more body shape diversity than their African counterparts, occupy significantly more slope and elevation habitats than African lineages. Differences in habitat occupation between the continental radiations occur by a combination of competition with cypriniform fishes in Africa restricting access to higher slope and elevation habitats and significantly more low elevation and slope habitat available in the neotropics. Our findings suggest that spatiotemporally widespread radiations, like the Characiformes, do not diversify across homogenized habitats and biotic assemblages, with differences in community structure and physical habitat important in driving unequal morphological diversification. </p>
Fig. 2 in Sexual Size and Shape Dimorphism in Dineutus nigrior (Coleoptera: Gyrinidae)
Fig. 2. Relationships between standardized body length and other body size measures in male and female Dineutus nigrior. Filled circles and solid lines indicate males; open circles and broken lines indicate females. Male n 5 63, female n 5 362–363.
Fig. 1 in Sexual Size and Shape Dimorphism in Dineutus nigrior (Coleoptera: Gyrinidae)
Fig. 1. Frequency distribution of canonical discriminant scores for male and female Dineutus nigrior.
Supplementary data for: "Global growth, green goals: Shaping sustainable futures in international business education and research" published at BAR - Brazilian Administration Review
Open the record for dataset details and reuse information.
FIGURE 2 in A new species of Pinalia (Orchidaceae) with bell-shaped flowers from the mossy forest of southern Mindanao, Philippines
FIGURE 2. Colored photos of Pinalia campanulata Saavedra & Pitogo. A. Flowering plant. B. Inflorescence. C. Lateral view of the flower showing its campanulate shape. D. Column (with the pollinia, left). E. Labellum (flattened). F. Labellum with column (natural form). G. petals and sepals.
FIGURE 1 in A new species of Pinalia (Orchidaceae) with bell-shaped flowers from the mossy forest of southern Mindanao, Philippines
FIGURE 1. Land cover map showing the known occurrences of Pinalia campanulata Saavedra & Pitogo in the Mt. Busa Key Biodiversity Area (KBA 196) in Southern Mindanao, Philippines.
FIGURE 3. Pinalia campanulata Saavedra & Pitogo. A in A new species of Pinalia (Orchidaceae) with bell-shaped flowers from the mossy forest of southern Mindanao, Philippines
FIGURE 3. Pinalia campanulata Saavedra & Pitogo. A. Underside view of a flowering plant. B. Top view of labellum. C. Column (with the pollinia, left). D. Front view of flower. E. Lateral view of flower. F. Petals, sepals, and labellum (flattened). Illustrated by Larie Dianco.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.