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4,144 results for “ITS barcode”
FIGURE 12 in Taxonomy and DNA barcoding of the dark-winged fungus gnat genus Zygoneura Meigen (Diptera: Sciaridae) from China, with revision of the type materials
FIGURE 12. Zygoneura (Pharetratula) transferata Rudzinski. A: head, frontal view; B: hypopygium, ventral view; C: apex of foretibia; D: fourth antennal flagellomere; E: wing, dorsal view.
FIGURE 8 in Taxonomy and DNA barcoding of the dark-winged fungus gnat genus Zygoneura Meigen (Diptera: Sciaridae) from China, with revision of the type materials
FIGURE 8. Zygoneura (Pharetratula) longa Zhang & Wu. i: slide, front side; ii: slide, flip side; A: habitus, lateral view; B: head, frontal view; C: hypopygium, ventral view; D: fourth antennal flagellomere.
FIGURE 7 in Taxonomy and DNA barcoding of the dark-winged fungus gnat genus Zygoneura Meigen (Diptera: Sciaridae) from China, with revision of the type materials
FIGURE 7. Zygoneura (Pharetratula) flavicornis (Mamaev). i: slide, front side; ii: slide, flip side; A: habitus, lateral view; B: hypopygium, ventral view; C: fourth antennal flagellomere.
FIGURE 9 in Taxonomy and DNA barcoding of the dark-winged fungus gnat genus Zygoneura Meigen (Diptera: Sciaridae) from China, with revision of the type materials
FIGURE 9. Zygoneura (Pharetratula) minuscula Shah & Huang sp. nov. A: habitus, lateral view; B: hypopygium, ventral view; C: fourth antennal flagellomere; D: maxillary palpus, lateral view; E: gonostylus, lateral view.
Fig. 4 A in DNA barcoding and genetic variability of earthworms (Clitellata: Oligochaeta) with new records from Mizoram, India
Fig. 4 A MP tree showing 145 COI barcodes with Drawida japon- ▸ ica as out-group. Figure 4B BI tree with 145 COI barcodes with D. japonica as out-group
Fig. 3 in DNA barcoding and genetic variability of earthworms (Clitellata: Oligochaeta) with new records from Mizoram, India
Fig. 3 Barcode gap results: a ABGD analysis showing percentage of intra and interspecific divergence with 10–12% barcode gap; b BGA analysis shows percentage of interspecific divergence
Fig. 5 in DNA barcoding and genetic variability of earthworms (Clitellata: Oligochaeta) with new records from Mizoram, India
Fig. 5 Haplotype networking of 20 earthworm species of Mizoram, NER. In the network, each haplotype is represented by a circle, and the size of the circle is directly proportional to the number of homozygous haplotypes. The undetected haplotypes are indicated in small red circles, while the different colors indicate different haplotypes of 20 earthworm species. The out-group D. japonica is represented in a black circle (for more information, see Table 4)
FIGURE 2 in Complementary studies of the Perlidae (Insecta: Plecoptera) fauna from the Paranapiacaba Mountains using DNA barcode data
FIGURE 2. Anacroneuria itajaimirim nymph. (A) head and pronotum; (B) mesonotum and metanotum; (C) abdomen; (D) leg; (E) labium; (F) mandible; (G) maxilla; (H) cercus. Scales: 1 mm.
FIGURE 1 in Complementary studies of the Perlidae (Insecta: Plecoptera) fauna from the Paranapiacaba Mountains using DNA barcode data
FIGURE 1. Molecular analysis. Maximum-Likelihood tree of Perlidae from Intervales State Park obtained using mitochondrial cytochrome c oxidase subunit I (COI) sequences (635 bp). The values represent ML posterior probabilities and green squares denote new sequences of COI barcode region. Voucher codes are present in parentheses. A. = Anacroneuria, K. = Kempnyia, M. = Macrogynoplax
FIGURE 2 in Effectiveness of DNA barcoding markers in the description of a new and unusual calyptrate species of Myrcianthes (Myrtaceae)
FIGURE 2. Myrcianthes roncesvallensis. (A) Closed calyx detaching as a unit (C. Parra-O. & A. F. Bohórquez 853), (B) closed calyx tearing in two or three more or less regular lobes (C. Parra-O. & A. F. Bohórquez 849), (C) both types of calyx opening in flowers of the same inflorescence (C. Parra-O. & A. F. Bohórquez 857), (D) tissue remnants from the calyx opening that persist attached to the hypanthium (C. Parra-O. & A. F. Bohórquez 852), (E) remnants of the calyx in the fruit (C. Parra-O. & A. F. Bohórquez 852), (F) remnants of the calyx in the fruit (C. Parra-O. & A. F. Bohórquez 856). Photos: A. F. Bohórquez (A); C. Parra-O. (B, C, D, E, and F). Scale bar = 5 mm.
FIGURE 1 in Effectiveness of DNA barcoding markers in the description of a new and unusual calyptrate species of Myrcianthes (Myrtaceae)
FIGURE 1. Myrcianthes roncesvallensis. (A) flowering branch, (B) inflorescence, (C) flower bud, (D) petal, (E) longitudinal section of hypanthium and ovary, (F) cross section of ovary, (G) fruit, (H) embryo. Illustration by Laura Giraldo Kalil; A, C, D, E, and F drawn from the holotype, B drawn from C. Parra-O. & A. F. Bohórquez 857, G and H drawn from C. Parra-O. & A. F. Bohórquez 852.
FIGURE 1 in Genetic barcoding resolves the historically known red alga Champia parvula from southern New England, USA, as C. farlowii sp. nov. (Champiaceae, Rhodymeniales)
FIGURE 1. Distance analysis of the COI-5P barcode region using UPGMA for Champia species. Sequences other than C. farlowii and C. parvula are collapsed based on the automated barcode gap analysis. The arrow shows the gap in the distance histogram that was used to collapse nodes.
FIGURES 3–10 in Genetic barcoding resolves the historically known red alga Champia parvula from southern New England, USA, as C. farlowii sp. nov. (Champiaceae, Rhodymeniales)
FIGURES 3–10. Champia farlowii sp. nov. 3. P.B.-A. no. 592, as Champia parvula, from Massachusetts (Collins et al., 1899). Scale bar = 4 cm. 4. Holotype specimen [EC059] from Charleston, Rhode Island. Scale bar = 2 cm. 5. Apex of branch in longitudinal section showing single-layered septa between nodes, and longitudinal filaments bearing a gland cell (arrow) [CWS 94-3-5]. Scale bar = 200 μm. 6. Cortex of node showing complete lower layer and incomplete outer layer [CWS 09-39-7]. Scale bar = 50 μm. 7. Axial view showing branch originating in internode (arrow) [CWS 1318]. Scale bar = 100 μm. 8. Surface view showing tetrahedral sporangia in outer cortex [CWS 1318]. Scale bar = 50 μm. 9. Nodes showing one and many clustered cystocarps [CWS 1029]. Scale bar = 500 μm. 10. Longitudinal section of cystocarp demonstrating the 'tela arachnoidea' formed between carposporophyte (not shown) and pericarp wall [CWS 1029]. Scale bar = 500 μm.
FIGURE 2 in Genetic barcoding resolves the historically known red alga Champia parvula from southern New England, USA, as C. farlowii sp. nov. (Champiaceae, Rhodymeniales)
FIGURE 2. Phylogeny of the Champiaceae based on maximum-likelihood (ML) analysis of rbcL sequences with bootstrap values (1000 replicates). Champia farlowii is distinct from C. parvula from near the type locality (Spain) and a re-examination of C. parvula in the Caribbean Sea and Gulf of Mexico is warranted.
FIGURE 6 in DNA Barcoding of Endangered Paphiopedilum species (Orchidaceae) of Peninsular Malaysia
FIGURE 6. Barcoding gap assessment based on the distribution of intraspecific and interspecific distances. No overlap of intraspecific and interspecific distances indicates a barcoding gap. a: matK (present), b: ITS (not present), c: trnH-psbA (not present), d: rbcL (not present).
FIGURE 4 in DNA Barcoding of Endangered Paphiopedilum species (Orchidaceae) of Peninsular Malaysia
FIGURE 4. NJ bootstrap consensus condensed (cutoff at 50%) phylogenetic tree of trnH-psbA barcodes. Constructed with Kimura-2- parameter and 1000 bootstrap replicates. Outgroups (family Orchidaceae) were obtained from GenBank.
FIGURE 5 in DNA Barcoding of Endangered Paphiopedilum species (Orchidaceae) of Peninsular Malaysia
FIGURE 5. NJ bootstrap consensus condensed (cutoff at 50%) phylogenetic tree using rbcL barcodes. Constructed with Kimura-2- parameter and 1000 bootstrap replicates. Outgroups (family Orchidaceae) were obtained from GenBank.
FIGURE 3 in DNA Barcoding of Endangered Paphiopedilum species (Orchidaceae) of Peninsular Malaysia
FIGURE 3. NJ bootstrap consensus condensed (cutoff at 50%) phylogenetic tree of ITS barcodes. Constructed with Kimura-2-parameter and 1000 bootstrap replicates. Outgroups (family Orchidaceae) were obtained from GenBank.
FIGURE 2 in DNA Barcoding of Endangered Paphiopedilum species (Orchidaceae) of Peninsular Malaysia
FIGURE 2. NJ bootstrap consensus condensed (cutoff at 50%) phylogenetic tree of matK barcodes. Constructed with Kimura-2-parameter and 1000 bootstrap replicates. Outgroups (family Orchidaceae) were obtained from GenBank.
FIGURE 1 in DNA Barcoding of Endangered Paphiopedilum species (Orchidaceae) of Peninsular Malaysia
FIGURE 1. BLASTn results of DNA barcodes. Percentage of accuracy was based on the total number of correct matches with the GenBank database.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.