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De novo assemblies for the manuscrip "Candida albicans isolates contain frequent heterozygous structural variants and transposable elements within genes and centromeres"
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FIGURE 5 in A new species in the Cyrtodactylus intermedius (Squamata: Gekkonidae) group from an isolated limestone karst formation in southwestern Cambodia
FIGURE 5. Photographs of C. regicavernicolus sp. nov. in preservative. A. Rostral region of holotype male CBC 03257 illustrating rostral bordered posteriorly by a single internasal scale (arrow). B. Precloacal region of holotype male CBC 03257 precloacal pores (arrows). C. Precloacal region of paratype female CBC 03298 illustrating precloacal pits (arrows).
FIGURE 4 in A new species in the Cyrtodactylus intermedius (Squamata: Gekkonidae) group from an isolated limestone karst formation in southwestern Cambodia
FIGURE 4. Photographs of C. regicavernicolus sp. nov. in life. A. Holotype adult male CBC 03257. B. Paratype adult male CBC 03259. C. Unsexed juvenile CBC 03263 from holotype locality. Photographs by Thy Neang.
FIGURE 1. A in A new species in the Cyrtodactylus intermedius (Squamata: Gekkonidae) group from an isolated limestone karst formation in southwestern Cambodia
FIGURE 1. A. Map illustrating the type localities of C. regicavernicolus sp. nov. (circle) and its closest relatives in both phylogeny and geography, C. laangensis (pentagon) and C. bokorensis (triangle). B. Paratype (CBC 03259) locality of C. regicavernicolus sp. nov. C. Holotype locality of C. regicavernicolus sp. nov. at Phnom Preah Kuhear Loung. Photograph by Saveng Ith.
FIGURE 3. A in A new species in the Cyrtodactylus intermedius (Squamata: Gekkonidae) group from an isolated limestone karst formation in southwestern Cambodia
FIGURE 3. A. MFA of the closest relatives of Cyrtodactylus regicavernicolus sp. nov. B. Percent contributions of each data type to the inertia of MFA dimensions 1–4. The red dotted line is the average value if all characters contributed equally to the amount of variation.
FIGURE 2 in A new species in the Cyrtodactylus intermedius (Squamata: Gekkonidae) group from an isolated limestone karst formation in southwestern Cambodia
FIGURE 2. Fifty percent majority-rule consensus phylogram resulting from partitioned Bayesian analysis of 1,035 characters of the coding region of the mitochondrial ND2 gene from Cyrtodactylus geckos. Numbers at nodes are Bayesian posterior probabilities (left) and bootstrap values ≥ 50 from a separate maximum likelihood analysis (right). Species names are followed by voucher numbers (where known) and GenBank accession numbers in parentheses. The holotype of C. regicavernicolus sp. nov. is illustrated.
Test of Isolate Acid Bacteria as Microbial Enchanced Oil Recovery in Ledok Field
<p>This material has presented on 2nd International Conference on Advanced Research in Engineering and Technology in October 25, 2023.</p>
Urocanic acid as a novel scaffold for next-gen nature-inspired sunscreens: I. Electronic laser spectroscopy under isolated conditions - dataset
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Fig 6 in Whole-Genome Optical Mapping and Finished Genome Sequence of Sphingobacterium deserti sp. nov., a New Species Isolated from the Western Desert of China
Fig 6. Venn diagram depicting orthologous groups of predicted proteins encoded in four sphingobacterial genomes. C1: Sphingobacterium spiritivorum ATCC 33300; C2: Sphingobacterium paucimobilis HER1398; C3: Sphingobacterium thalpophilum DSM11723; and C4: Sphingobacterium deserti ZWT. doi:10.1371/journal.pone.0122254.g006
Fig 4 in Whole-Genome Optical Mapping and Finished Genome Sequence of Sphingobacterium deserti sp. nov., a New Species Isolated from the Western Desert of China
Fig 4. Genome map of Sphingobacterium deserti sp. nov. ZWT. Concentric tracks from the inside to the outside represent the GC nucleotide bias; the GC content; tRNA and rRNA genes on the reverse strand; tRNA and rRNA genes on the forward-strand; reverse-strand coding sequences (CDSs); and forwardstrand CDSs. doi:10.1371/journal. pone.0122254.g004
Fig 1 in Whole-Genome Optical Mapping and Finished Genome Sequence of Sphingobacterium deserti sp. nov., a New Species Isolated from the Western Desert of China
Fig 1. Electron micrograph of the cell morphology of strain ZWT. doi:10.1371/journal.pone.0122254.g001
Dataset of a Streptococcus hillyeri isolated from septic pleuritis of a horse
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Fig 5 in Whole-Genome Optical Mapping and Finished Genome Sequence of Sphingobacterium deserti sp. nov., a New Species Isolated from the Western Desert of China
Fig 5. Whole-genome optical mapping barcode of Sphingobacterium deserti sp. nov. ZWT. Vertical lines represent restriction sites; distances between lines represent fragment sizes.
ISOLATION AND IDENTIFICATION OF A NOVEL COMPOUND FROM WITHANIASOMNIFERA: IN VITRO STUDIES ON HIV-1 REVERSE TRANSCRIPTASE INHIBITION
<p><strong><span>ABSTRACT</span></strong></p> <p><span>The emergence of drug-resistant strains of HIV-1 underscores the need for novel therapeutic agents with improved efficacy and safety profiles. Therefore, this study aims to assess the in vitro HIV-1 RT inhibition of active molecule isolated form W. somnifera. Crude extract was prepared from W. sominfera stem bark my using methanol solvent. Isolation and Purification was done using TLC, column chromatography techniques. Characterization of isolated compound was done with using spectral studies. HIV-1 RT inhibition of isolated compound was done. Cell viability against PBMC cells of isolated compound was performed with MTT assay. The compound exhibited a dosedependent inhibition of HIV-1 RT activity, with increasing percentages of inhibition observed at higher concentrations. At 50 µg/mL, Compound displayed a 31.5% inhibition, which progressively increased to 76.4% at 800 µg/mL. The IC50 value for Compound was determined to be 152 µg/mL, indicating the concentration at which 50% inhibition of HIV-1 RT activity is achieved. The isolated compound exhibited decreasing cell viability as the concentration increased, with values of 91%, 85.1%, 75.5%, 68.0%, and 65.4% at 50 µg/mL, 100 µg/mL, 200 µg/mL, 400 µg/mL, and 800 µg/mL, respectively. These findings underscore the importance of comprehensive assessment of compound activity, considering both antiviral potency against HIV-1 RT and cytotoxic effects on healthy cells.<br></span></p> <p><strong><span>Keywords</span><span>: </span></strong><span>HIV-1 RT, W. somnifera, TLC, Column, Cell viability, MTT assay</span> </p>
Isolated urban sound database
<p>The Isolated urban sound database contains the audio samples used to design urban sound mixtures using <a href="https://bitbucket.org/mlagrange/simscene">SimScene</a> software. </p> <p>This database has already been used to design urban sound mixtures that can be found in <a href="https://zenodo.org/record/1145855">Estimation of the road traffic sound levels based on Non-Negative Matrix Factorization dataset</a> [1] and in <a href="https://zenodo.org/record/1184443">Realistic urban sound mixture dataset</a> [2]</p> <p>The dataset contains two folders :</p> <p>- 'event' which includes includes 231 brief sound samples considered as salient, with a 1 to 20 seconds duration and classified among 21 sound classes (ringing bell, whistling bird, car horn, passing car, hammer, barking dog, siren, footstep, metallic noise, voice...)</p> <p>- 'background' which includes 162 long duration sounds (~1mn30), whose acoustic properties do not vary in time. This category includes among others, whistling bird, crowd noise, rain, children playing in schoolyard, constant traffic noise ...</p> <p>More details on this sound database can be found in [3]</p> <p> </p> <p>[1] J.-R. Gloaguen, M. Lagrange, A. Can, J.-F. Petiot, Estimation of the road traffic sound levels in urban areas based on non-negative matrix factorization techniques, submitted for publication</p> <p>[2] J.-R. Gloaguen, A. Can, M. Lagrange, J.-F. Petiot, Road traffic sound level estimation from realistic urban sound mixtures by Non-negative Matrix Factorization, submitted for publication</p> <p>[3] J.-R. Gloaguen, A. Can, M. Lagrange, J.-F. Petiot, Creation of a corpus of realistic urban sound scenes with controlled acoustic properties, in: Acoustics ’17 Boston, Vol. 141 of The Journal of the Acoustical Society of America, Acoustical Society of America and the European Acoustics Association, Boston, United States, 2017, pp. 4044–4044.</p>
Supplementary material 4 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Table S1 : Explanation note: Fermentation products of Liebetanzomyces polymorphus strain G1SC on different substrates after 5 d of incubation.
Supplementary material 3 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure S3 : Explanation note: The Non-metric multidimensional scaling (NMDS) plot showing clustering of various carbon sources based on fermentation products. Stress value, 0.012.
Supplementary material 1 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure S1 : Explanation note: Photographs showing fungal thalli (marked by arrows) of Liebetanzomyces polymorphus attached to the sides (A) and bottom (B) of glass bottles when grown in liquid medium.
Supplementary material 2 from: Joshi A, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Griffith GW, Dagar SS (2018) Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. MycoKeys 40: 89-110. https://doi.org/10.3897/mycokeys.40.28337
Figure S2 : Explanation note: The ITS1 based maximum-likelihood tree based on the Tamura 3-parameter model (Tamura 1992) is showing the phylogenetic position of Liebetanzomyces polymorphus with nearest uncultured clones. The genus Anaeromyces mucronatus (accession number: NR_111156) was used as the outgroup. Bootstrap values (>50%) based on 500 replicates are indicated at branching points. The GenBank accession number of each strain is listed before the name. Bar, 0.02 substitutions per site.
Fig. 1 Sampling strategy for Streptomyces from insect microbiomes. Streptomyces were isolated from a in The antimicrobial potential from insect microbiomes of Streptomyces
Fig. 1 Sampling strategy for Streptomyces from insect microbiomes. Streptomyces were isolated from a wide range of insects and geographies (1445 insects; 10,178 strains; dot size, insects sampled). Streptomyces production of the antifungal mycangimycin (1) in the Southern Pine Beetle system is shown at right. Cyphomycin (2) is a new antifungal described herein. Photo credits: southern pine beetle - Erich G. Vallery; fungus-growing ant – Alexander Wild
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.