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15,542 results for “How long”
Data for the publication: Surging process and mechanism of small glaciers in the Qilian mountains revealed by long-term and dense remote sensing observations
<p>This repository contains the data and results associated to the publication submitted entitled "Surging process and mechanism of small glaciers in the Qilian mountains revealed by long-term and dense remote sensing observations".</p> <p>The results and data contain:</p> <ul> <li>Raw and processed ASTER DEM time series data stored in netcdf format (<em>Hala_surges_aster**.nc</em>): </li> </ul> <ol> <li>Raw DEM stack composed of 56 ASTER DEM.</li> <li>Processed DEM stacks generated by LOWESS-ALPS-REML workflow in each step.</li> </ol> <ul> <li>Multi-temporal elevation change maps stored in geotiff format:</li> </ul> <ol> <li>multi-temporal elevation change results calculated from different DEMs during different period (<em>Hala_surges_[sensor]_[period]_dh_final.tif</em>).</li> <li>Elevation difference map of SRTM-X and SRTM-C DEMs for estimation penetration depth difference ( <br><em>strm-c_x_n37_39_e96_e98_pentration_dh_final.tif</em>)</li> </ol> <ul> <li>Flow velocity time-series result processed by TICOI package stored in netcdf format:</li> </ul> <ol> <li>Irregular-sampling time-series inverted flow velocity results, represted by pixel-wise cumulative displacements ( <br><em>Hala_surges_LS7_LS8_ticoi_flow_angle_refine_velo_invert_ticoi.nc</em>)</li> <li>Regular-sampling time-series flow velocity results, interpolated to 30 days interval from the inverted results ( <br><em>Hala_surges_LS7_LS8_ticoi_flow_angle_refine_velo_interp_ticoi.nc</em>)</li> </ol>
Radiative and climatic impacts of coarse aerosols scattering in the long-wave spectrum
<p>The data deposited on the site concern the output of the ARPEGE climate model at monthly resolution. This concerns the different variables used and analysed in the article. They include simulations with LW aerosol scattering (LWAS) and without aerosol scattering (NOLWAS). The data description, resolution and information on fields outputs are available in each NetCDF file submitted.</p>
Dataset: Lodgepole pine Pinus contorta Douglas ex Loudon invasion in subarctic Iceland: evidence from a long-term study.
<p>This dataset supports the paper <em>Lodgepole Pine (Pinus contorta Douglas ex Loudon) Invasion in Subarctic Iceland: Evidence from a Long-Term Study</em>, published in <em>NeoBiota</em>. It includes the following files:</p> <ol> <li><strong>Point_data_distribution.csv</strong>: Contains distribution point data for <em>Pinus contorta</em> in Steinadalur, using the WGS 84 coordinate reference system (EPSG:4326).</li> <li><strong>Plot_data_pinus.csv</strong>: provides data on plant species richness within study plots.</li> <li><strong>Transects_data.csv</strong>: Includes information on the density of <em>P. contorta</em> along transects.</li> </ol>
Recorded temperature data of a reinforced concrete, 1.2-m long, beam-slab model and associated meteorological data.
<div><strong>The data contain internal and surface temperature measurements of a 1.2 m-long, reinforced concrete girder-slab element exposed to the environmental conditions of the city of Bucaramanga, Colombia (Coordinates: 7°08'35", 73°07'18"). In addition, meteorological variables of the environment near the element were recorded. The data was measured from July 7, 2023, to November 6, 2023.</strong></div> <div><strong>The data were obtained by:</strong></div> <ul> <li> <div><strong>Internal Temperature (file name: InternalTemperature): 40 thermocouples were embedded in the element (Fig. 1) to collect data every 30 minutes from 6:30 AM on July 10, 2023 to 11:30 PM on November 6, 2023. Temperatures are in degrees Celsius (°C).</strong></div> </li> <li> <div><strong>Surface Temperature (file name: SurfaceTemperatureCameraEast and SurfaceTemperatureCameraWest): A FLIR E6 XT thermal camera was used to record Surface temperature of 10 points on the EAST (Fig. 2) and WEST (Fig. 3) faces of the element from 6:30 AM on June 29, 2023 to 4 PM on October 31, 2023. Twenty daily measurements were recorded every 30 minutes. Temperatures are in degrees Celsius (°C).</strong></div> </li> <li> <div><strong>Surface Temperature (file name: SurfaceTemperatureDroneEast): A DJI MAVIC 2 ENTERPRISE ADVANCED (EU) drone equipped with a thermal imaging camera measured the surface temperature of 10 points on the EAST side of the element (Fig. 4) every 30 minutes, from 6:30 AM on September 9 to 4 PM on October 31. Temperatures are in degrees Celsius (°C).</strong></div> </li> <li><strong>Meteorological variables (file name: WeatherStationData): A DAVIS VANTAGE PRO-2 WLRS weather station recorded data every 30 minutes from 12 AM on July 10, 2023, to 12:30 PM on November 6, 2023. The data included the average, maximum, and minimum ambient temperature (°C); relative humidity (%); speed (m/s) and wind direction (cardinal direction); atmospheric pressure (mb); precipitation (mm) and average and maximum solar radiation (W/m<sup>2</sup>).</strong></li> </ul>
Exo-Metabolomics Data for "Phocaeicola vulgatus shapes the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile"
<p>Exo-Metabolomics Data for "<em>Phocaeicola vulgatus</em> shapes the long-term growth dynamics and evolutionary adaptations of <em>Clostridioides difficile</em>"</p>
Illumina Sequencing Data for "Phocaeicola vulgatus shapes the long-term growth dynamics and evolutionary adaptations of Clostridioides difficile"
<p>Illumina Sequencing Data for "<em>Phocaeicola vulgatus</em> shapes the long-term growth dynamics and evolutionary adaptations of <em>Clostridioides difficile</em>"</p>
(12)-Pereyra2024A-DS0001--0009 – Nine Tribolium castaneum long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy
<p>(12)-Pereyra2024A-DS0001--0009 – Nine <em>Tribolium castaneum</em> long-term live imaging datasets of embryonic development acquired with light sheet fluorescence microscopy</p>
An improved long-term high-resolution surface pCO2 data product for the Indian Ocean using machine learning
<p>This dataset contains two improved surface pCO2 products, along with surface pCO2 from the INCOIS-BIO-ROMS model (pCO2_model) and other input variables. It is a long-term, high-resolution dataset developed for the Indian Ocean region (30°E - 120°E, 30°S - 30°N), covering the period from 1980 to 2019. The dataset features a monthly temporal resolution and a spatial resolution of 1/12 degree.</p> <p> The file includes INCOIS-BIO-ROMS model outputs (sea surface temperature (SST), sea surface salinity (SSS), mixed layer depth (MLD), nitrate (NO3), dissolved inorganic carbon (DIC), and chlorophyll-a (CHL)). These variables are used as inputs for machine learning models to improve the pCO2_model. The machine learning model predicts the surface pCO2 deviants (pCO2_obs - pCO2_model). The file also provides spatiotemporally varying uncertainties associated with the predicted pCO2 deviants.</p> <p><strong>**Users are advised to download Version v2 of the data product, as Version v1 has been deprecated and is no longer recommended for use.</strong></p>
Long-term Continuous Red and Near-infrared Channel Reflectance from MODIS, 2001-2023 (LCREF-MODIS)
<p><strong>Usage Notes</strong>:<br>This is the updated LCREF-MODIS dataset (v3.2) consists of BRDF-normalized MODIS red and near-infrared surface reflectance. The LCREF-MODIS product was used to calibrate and benchmark the AVHRR surface reflectance to produce a temporally consistent record of surface reflectance prior to the MODIS era. It was also used to generate LCSPP-MODIS (previously known as LCSIF-MODIS) as a benchmark.</p> <p><strong>Key updates in version 3.2 include:</strong></p> <ul> <li><strong>Quality Flags</strong>: New quality flag layer enables users to identify whether a pixel is derived from observed surface reflectance (QA=0), high-quality gap-filled values (QA=1), lower-quality gap-filled based on the mean seasonal cycle (QA=2), or missing entirely (QA=3). We advice the user to rely only on observed and high-quality gap-filled values for their analyses.</li> <li><strong>Extension:</strong> to include observations from the year of 2023.</li> <li><strong>Snow mask: </strong>we note that all pixels marked with percent_snow >0 in the original MCD43C1.v061 have been removed. This conservative approach was applied to reduce bias during cross-calibration, since unlike MODIS, AVHRR does not have a reliable snow detection algorithm. Therefore, surface reflectance values in high latitude regions are almost entirely gap-filled and should never be used for analysis for both LCREF-AVHRR and LCREF-MODIS. We encourage users to use only QA=0 and QA=1 pixels for their analysis. Alternatively, users can use LCREF-MODIS from the previous version for high latitude regions (v3.1), which did not mask out snow-covered pixles. </li> </ul> <p>The user can choose between LCREF-AVHRR and LCREF-MODIS for the overlapping period from 2001-2023. The two datasets are generally consistent during this overlapping period, although LCREF-MODIS shows a stronger greening trend between 2001-2023. For studies exploring the long-term vegetation dynamics, the user can either use only LCREF-AVHRR or use a blend dataset of LCREF-AVHRR and LCREF-MODIS as a sensitivity test. </p> <ul> <li>The LCREF-AVHRR v3.2 (1982-2023) is available at <a href="https://doi.org/10.5281/zenodo.11905959" target="_blank" rel="noopener">10.5281/zenodo.11905959</a></li> </ul> <p>The LCREF-AVHRR dataset was used as the input to generate LCSPP-AVHRR (previously known as LCSIF-AVHRR), and it can also be used to derive temporally consistant records of NDVI, NIRv, kNDVI, and other vegetation indices based on red and NIR surface reflectance variables. The user can access LCSPP products at:</p> <ul> <li>LCSPP-AVHRR v3.2 (1982-2000): <a href="https://doi.org/10.5281/zenodo.7916850" target="_blank" rel="noopener">10.5281/zenodo.7916850</a></li> <li>LCSPP-AVHRR v3.2 (2001-2023): <a href="https://doi.org/10.5281/zenodo.11906675" target="_blank" rel="noopener">10.5281/zenodo.11906675</a></li> <li>LCSPP-MODIS v3.2(2001-2023): <a href="https://doi.org/10.5281/zenodo.11657458" target="_blank" rel="noopener">10.5281/zenodo.11657458</a></li> </ul> <p>A manuscript describing the technical details is available at <a href="https://arxiv.org/abs/2311.14987" target="_blank" rel="noopener">https://arxiv.org/abs/2311.14987</a>, which detailed the uses and limitations of the dataset. All data outputs from this study are available at 0.05° spatial resolution and biweekly temporal resolution in NetCDF format. Each month is divided into two files, with the first file “a” representative of the 1<sup>st</sup> day to the 15<sup>th</sup> day of a month, and the second file “b” representative of the 16<sup>th</sup> day to the last day of a month.</p> <p><strong>Abstract:</strong></p> <p>Satellite-observed solar-induced chlorophyll fluorescence (SIF) is a powerful proxy for the photosynthetic characteristics of terrestrial ecosystems. Direct SIF observations are primarily limited to the recent decade, impeding their application in detecting long-term dynamics of ecosystem function. In this study, we leverage two surface reflectance bands available both from Advanced Very High-Resolution Radiometer (AVHRR, 1982-2023) and MODerate-resolution Imaging Spectroradiometer (MODIS, 2001-2023). Importantly, we calibrate and orbit-correct the AVHRR bands against their MODIS counterparts during their overlapping period. Using the long-term bias-corrected reflectance data from AVHRR and MODIS, a neural network is trained to produce a Long-term Continuous SIF-informed Photosynthesis Proxy (LCSPP) by emulating Orbiting Carbon Observatory-2 SIF, mapping it globally over the 1982-2023 period. Compared with previous SIF-informed photosynthesis proxies, LCSPP has similar skill but can be advantageously extended to the AVHRR period. Further comparison with three widely used vegetation indices (NDVI, kNDVI, NIRv) shows a higher or comparable correlation of LCSPP with satellite SIF and site-level GPP estimates across vegetation types, ensuring a greater capacity for representing long-term photosynthetic activity.</p> <p> </p>
Long-term Continuous SIF-informed Photosynthesis Proxy reconstructed with calibrated AVHRR surface reflectance (LCSPP-AVHRR), 2001-2023
<p><strong>Usage Notes</strong>:<br>This is the updated LCSPP dataset (v3.2), generated using the LCREF-AVHRR record from 1982–2023. Due to Zenodo’s size constraints, LCSPP-AVHRR is divided into two separate repositories. Previously referred to as "LCSIF," the dataset was renamed to emphasize its role as a SIF-informed long-term photosynthesis proxy derived from surface reflectance and to avoid confusion with directly measured SIF signals.</p> <p>Key updates in version 3.2 include:</p> <ul> <li><strong>Improved Calibration</strong>: Enhanced consistency in calibration methods, addressing technical limitations in version 3.1 including applying more stringent quality filtering and snow masks.</li> <li><strong>Quality Flags</strong>: New quality flag layer enables users to identify whether a pixel is derived from observed surface reflectance (QA=0), high-quality gap-filled values (QA=1), lower-quality gap-filled based on the mean seasonal cycle (QA=2), or missing entirely (QA=3). We advice the user to rely only on observed and high-quality gap-filled values for their analyses.</li> <li><strong>Extension</strong> to include observations from the year of 2023.</li> </ul> <p>Other LCSPP repositories can be accessed via the following links:</p> <ul> <li>LCSPP-AVHRR v3.2 (1982-2000): <a href="https://doi.org/10.5281/zenodo.7916850" target="_blank" rel="noopener">10.5281/zenodo.7916850</a></li> <li>LCSPP-MODIS v3.2(2001-2023): <a href="https://doi.org/10.5281/zenodo.11658088" target="_blank" rel="noopener">10.5281/zenodo.11658088</a></li> </ul> <p>The user can choose between LCSPP-AVHRR and LCSPP-MODIS for the overlapping period from 2001-2023. The two datasets are generally consistent during this overlapping period, although LCSPP-MODIS shows a stronger greening trend between 2001-2023. For studies exploring the long-term vegetation dynamics, the user can either use only LCSPP-AVHRR or use a blend dataset of LCSPP-AVHRR and LCSPP-MODIS as a sensitivity test. </p> <p>In addition, the updated long-term continuous reflectance datasets (LCREF), used for the production of LCSPP, can be accessed using the following links:</p> <ul> <li>LCREF-AVHRR v3.2 (1982-2023): <a href="https://doi.org/10.5281/zenodo.11905959" target="_blank" rel="noopener">10.5281/zenodo.11905959</a></li> <li>LCREF-MODIS v3.2 (2001-2023): <a href="https://doi.org/10.5281/zenodo.11657458" target="_blank" rel="noopener">10.5281/zenodo.11657458</a></li> </ul> <p>A manuscript describing the technical details is available at <a href="https://arxiv.org/abs/2311.14987" target="_blank" rel="noopener">https://arxiv.org/abs/2311.14987</a>, while detailed the uses and limitations of the dataset. In particular, we note that <strong>LCSPP</strong> <strong>is a reconstruction of SIF-informed photosynthesis proxy and should not be treated as SIF measurements</strong>. Although LCSPP has demonstrated skill in tracking the dynamics of GPP and PAR absorbed by canopy chlorophyll (APARchl), it is not suitable for estimating fluorescence quantum yield.</p> <p>All data outputs from this study are available at 0.05° spatial resolution and biweekly temporal resolution in NetCDF format. Each month is divided into two files, with the first file “a” representative of the 1<sup>st</sup> day to the 15<sup>th</sup> day of a month, and the second file “b” representative of the 16<sup>th</sup> day to the last day of a month.</p> <p><strong>Abstract:</strong></p> <p>Satellite-observed solar-induced chlorophyll fluorescence (SIF) is a powerful proxy for the photosynthetic characteristics of terrestrial ecosystems. Direct SIF observations are primarily limited to the recent decade, impeding their application in detecting long-term dynamics of ecosystem function. In this study, we leverage two surface reflectance bands available both from Advanced Very High-Resolution Radiometer (AVHRR, 1982-2023) and MODerate-resolution Imaging Spectroradiometer (MODIS, 2001-2023). Importantly, we calibrate and orbit-correct the AVHRR bands against their MODIS counterparts during their overlapping period. Using the long-term bias-corrected reflectance data from AVHRR and MODIS, a neural network is trained to produce a Long-term Continuous SIF-informed Photosynthesis Proxy (LCSPP) by emulating Orbiting Carbon Observatory-2 SIF, mapping it globally over the 1982-2023 period. Compared with previous SIF-informed photosynthesis proxies, LCSPP has similar skill but can be advantageously extended to the AVHRR period. Further comparison with three widely used vegetation indices (NDVI, kNDVI, NIRv) shows a higher or comparable correlation of LCSPP with satellite SIF and site-level GPP estimates across vegetation types, ensuring a greater capacity for representing long-term photosynthetic activity.</p>
Long-term Continuous Red and Near-infrared Channel Reflectance from AVHRR, 1982-2023 (LCREF-AVHRR)
<p><strong>Usage Notes</strong>:<br>This is the updated LCREF dataset (v3.2) consists of calibrated AVHRR surface reflectance record for the red and near-infrared channel. </p> <p><strong>Key updates in version 3.2 include:</strong></p> <ul> <li><strong>Improved Calibration</strong>: Enhanced consistency in calibration methods, addressing technical limitations in version 3.1 including applying more stringent quality filtering and snow masks.</li> <li><strong>Quality Flags</strong>: New quality flag layer enables users to identify whether a pixel is derived from observed surface reflectance (QA=0), high-quality gap-filled values (QA=1), lower-quality gap-filled based on the mean seasonal cycle (QA=2), or missing entirely (QA=3). We advice the user to rely only on observed and high-quality gap-filled values for their analyses.</li> <li><strong>Extension</strong> to include observations from the year of 2023.</li> </ul> <p>The user can choose between LCREF-AVHRR and LCREF-MODIS for the overlapping period from 2001-2023. The two datasets are generally consistent during this overlapping period, although LCREF-MODIS shows a stronger greening trend between 2001-2023. For studies exploring the long-term vegetation dynamics, the user can either use only LCREF-AVHRR or use a blend dataset of LCREF-AVHRR and LCREF-MODIS as a sensitivity test. </p> <ul> <li>The LCREF-MODIS v3.2 (2001-2023) is available at <a href="https://doi.org/10.5281/zenodo.11657458" target="_blank" rel="noopener">10.5281/zenodo.11657458</a>.</li> </ul> <p>The LCREF-AVHRR dataset was used as the input to generate LCSPP-AVHRR (previously known as LCSIF-AVHRR), and it can also be used to derive temporally consistant records of NDVI, NIRv, kNDVI, and other vegetation indices based on red and NIR surface reflectance variables. The user can access LCSPP products at:</p> <ul> <li>LCSPP-AVHRR v3.2 (1982-2000): <a href="https://doi.org/10.5281/zenodo.7916850" target="_blank" rel="noopener">10.5281/zenodo.7916850</a></li> <li>LCSPP-AVHRR v3.2 (2001-2023): <a href="https://doi.org/10.5281/zenodo.11906675" target="_blank" rel="noopener">10.5281/zenodo.11906675</a></li> <li>LCSPP-MODIS v3.2(2001-2023): <a href="https://doi.org/10.5281/zenodo.11658088" target="_blank" rel="noopener">10.5281/zenodo.11658088</a></li> </ul> <p>A manuscript describing the technical details is available at <a href="https://arxiv.org/abs/2311.14987" target="_blank" rel="noopener">https://arxiv.org/abs/2311.14987</a>, which detailed the uses and limitations of the dataset. All data outputs from this study are available at 0.05° spatial resolution and biweekly temporal resolution in NetCDF format. Each month is divided into two files, with the first file “a” representative of the 1<sup>st</sup> day to the 15<sup>th</sup> day of a month, and the second file “b” representative of the 16<sup>th</sup> day to the last day of a month.</p> <p><strong>Abstract:</strong></p> <p>Satellite-observed solar-induced chlorophyll fluorescence (SIF) is a powerful proxy for the photosynthetic characteristics of terrestrial ecosystems. Direct SIF observations are primarily limited to the recent decade, impeding their application in detecting long-term dynamics of ecosystem function. In this study, we leverage two surface reflectance bands available both from Advanced Very High-Resolution Radiometer (AVHRR, 1982-2023) and MODerate-resolution Imaging Spectroradiometer (MODIS, 2001-2023). Importantly, we calibrate and orbit-correct the AVHRR bands against their MODIS counterparts during their overlapping period. Using the long-term bias-corrected reflectance data from AVHRR and MODIS, a neural network is trained to produce a Long-term Continuous SIF-informed Photosynthesis Proxy (LCSPP) by emulating Orbiting Carbon Observatory-2 SIF, mapping it globally over the 1982-2023 period. Compared with previous SIF-informed photosynthesis proxies, LCSPP has similar skill but can be advantageously extended to the AVHRR period. Further comparison with three widely used vegetation indices (NDVI, kNDVI, NIRv) shows a higher or comparable correlation of LCSPP with satellite SIF and site-level GPP estimates across vegetation types, ensuring a greater capacity for representing long-term photosynthetic activity.</p>
Long-term Continuous SIF-informed Photosynthesis Proxy reconstructed with MODIS surface reflectance (LCSPP-MODIS), 2001-2023
<p><strong>Usage Notes</strong>:<br>This is the updated LCSPP dataset (v3.2), reconstructed using the MODIS record from 2001–2023. Previously referred to as "LCSIF," the dataset was renamed to emphasize its role as a SIF-informed long-term photosynthesis proxy derived from surface reflectance and to avoid confusion with directly measured SIF signals. The MODIS-based LCSPP is generated as an ancillary product to complement and benchmark the LCSPP-AVHRR product from 1982-2023.</p> <p>Key updates in version 3.2 include:</p> <ul> <li><strong>Improved Calibration</strong>: Enhanced consistency in calibration methods, addressing technical limitations in version 3.1 including applying more stringent quality filtering and snow masks.</li> <li><strong>Quality Flags</strong>: New quality flag layer enables users to identify whether a pixel is derived from observed surface reflectance (QA=0), high-quality gap-filled values (QA=1), lower-quality gap-filled based on the mean seasonal cycle (QA=2), or missing entirely (QA=3). We advice the user to rely only on observed and high-quality gap-filled values for their analyses.</li> <li><strong>Extension</strong> to include observations from the year of 2023.</li> </ul> <p>LCSPP-AVHRR repositories can be accessed via the following links:</p> <ul> <li>LCSPP-AVHRR v3.2 (1982-2000): <a href="https://doi.org/10.5281/zenodo.7916850" target="_blank" rel="noopener">10.5281/zenodo.7916850</a></li> <li>LCSPP-AVHRR v3.2 (2001-2023): <a href="https://doi.org/10.5281/zenodo.11906675" target="_blank" rel="noopener">10.5281/zenodo.11906675</a></li> </ul> <p>The user can choose between LCSPP-AVHRR and LCSPP-MODIS for the overlapping period from 2001-2023. The two datasets are generally consistent during this overlapping period, although LCSPP-MODIS shows a stronger greening trend between 2001-2023. For studies exploring the long-term vegetation dynamics, the user can either use only LCSPP-AVHRR or use a blend dataset of LCSPP-AVHRR and LCSPP-MODIS as a sensitivity test. </p> <p>In addition, the updated long-term continuous reflectance datasets (LCREF), used for the production of LCSPP, can be accessed using the following links:</p> <ul> <li>LCREF-AVHRR v3.1 (1982-2023): <a href="https://doi.org/10.5281/zenodo.11905959" target="_blank" rel="noopener">10.5281/zenodo.11905959</a></li> <li>LCREF-MODIS v3.1 (2001-2023): <a href="https://doi.org/10.5281/zenodo.11657458" target="_blank" rel="noopener">10.5281/zenodo.11657458</a></li> </ul> <p>A manuscript describing the technical details is available at <a href="https://arxiv.org/abs/2311.14987" target="_blank" rel="noopener">https://arxiv.org/abs/2311.14987</a>, while detailed the uses and limitations of the dataset. In particular, we note that <strong>LCSPP</strong> <strong>is a reconstruction of SIF-informed photosynthesis proxy and should not be treated as SIF measurements</strong>. Although LCSPP has demonstrated skill in tracking the dynamics of GPP and PAR absorbed by canopy chlorophyll (APARchl), it is not suitable for estimating fluorescence quantum yield.</p> <p>All data outputs from this study are available at 0.05° spatial resolution and biweekly temporal resolution in NetCDF format. Each month is divided into two files, with the first file “a” representative of the 1<sup>st</sup> day to the 15<sup>th</sup> day of a month, and the second file “b” representative of the 16<sup>th</sup> day to the last day of a month.</p> <p><strong>Abstract:</strong></p> <p>Satellite-observed solar-induced chlorophyll fluorescence (SIF) is a powerful proxy for the photosynthetic characteristics of terrestrial ecosystems. Direct SIF observations are primarily limited to the recent decade, impeding their application in detecting long-term dynamics of ecosystem function. In this study, we leverage two surface reflectance bands available both from Advanced Very High-Resolution Radiometer (AVHRR, 1982-2023) and MODerate-resolution Imaging Spectroradiometer (MODIS, 2001-2023). Importantly, we calibrate and orbit-correct the AVHRR bands against their MODIS counterparts during their overlapping period. Using the long-term bias-corrected reflectance data from AVHRR and MODIS, a neural network is trained to produce a Long-term Continuous SIF-informed Photosynthesis Proxy (LCSPP) by emulating Orbiting Carbon Observatory-2 SIF, mapping it globally over the 1982-2023 period. Compared with previous SIF-informed photosynthesis proxies, LCSPP has similar skill but can be advantageously extended to the AVHRR period. Further comparison with three widely used vegetation indices (NDVI, kNDVI, NIRv) shows a higher or comparable correlation of LCSPP with satellite SIF and site-level GPP estimates across vegetation types, ensuring a greater capacity for representing long-term photosynthetic activity.</p> <p> </p>
Olink data for 'Identification of soluble biomarkers that associate with distinct manifestations of long COVID'
<p>Olink analysis output from plasma samples from healthy donors and donors with post-acute sequelae of SARS-CoV-2 infection. Data sourced from two cohorts - UK and Sweden based. UK patients with long covid start with CA. UK healthy controls start with CO. Swedish donors only include patients with long covid and start with KLIMP. Assays from the following panels were tested: Explore 384 Cardiometabolic, Explore 384 Cardiometabolic II, Explore 384 Inflammation, Explore 384 Inflammation II, Explore 384 Neurology, Explore 384 Neurology II, Explore 384 Oncology, Explore 384 Oncology II. </p> <p>Data relates to the manuscript titled 'Identification of soluble biomarkers that associate with distinct manifestations of long COVID'.</p>
Data from: Long-term trends in the occupancy of ants revealed through use of multi-sourced datasets
<p><span>We combined participatory science data and museum records to understand long-term changes in occupancy for 29 ant species in Denmark over 119 years. Bayesian occupancy modelling indicated change in occupancy for 15 species: five increased, four declined and six showed fluctuating trends. We consider how trends may have been influenced by life-history and habitat changes. Our results build on an emerging picture that biodiversity change in insects is more complex than implied by the simple insect decline narrative.</span></p>
Long short-term memory (LSTM) recurrent neural network for muscle activity detection
<p><strong>Background: </strong>The accurate temporal analysis of muscle activation is of great interest in many research areas, spanning<br> from neurorobotic systems to the assessment of altered locomotion patterns in orthopedic and neurological<br> patients and the monitoring of their motor rehabilitation. The performance of the existing muscle activity detectors<br> is strongly affected by both the SNR of the surface electromyography (sEMG) signals and the set of features used to<br> detect the activation intervals. This work aims at introducing and validating a powerful approach to detect muscle<br> activation intervals from sEMG signals, based on long short-term memory (LSTM) recurrent neural networks.<br> </p> <p><strong>Methods: </strong>First, the applicability of the proposed LSTM-based muscle activity detector (LSTM-MAD) is studied<br> through simulated sEMG signals, comparing the LSTM-MAD performance against other two widely used approaches,<br> i.e., the standard approach based on Teager–Kaiser Energy Operator (TKEO) and the traditional approach, used in<br> clinical gait analysis, based on a double-threshold statistical detector (Stat). Second, the effect of the Signal-to-Noise<br> Ratio (SNR) on the performance of the LSTM-MAD is assessed considering simulated signals with nine different SNR<br> values. Finally, the newly introduced approach is validated on real sEMG signals, acquired during both physiological<br> and pathological gait. Electromyography recordings from a total of 20 subjects (8 healthy individuals, 6 orthopedic<br> patients, and 6 neurological patients) were included in the analysis.</p> <p><strong>Results</strong>: The proposed algorithm overcomes the main limitations of the other tested approaches and it works<br> directly on sEMG signals, without the need for background-noise and SNR estimation (as in Stat). Results demonstrate<br> that LSTM-MAD outperforms the other approaches, revealing higher values of F1-score (F1-score > 0.91) and Jaccard<br> similarity index (Jaccard > 0.85), and lower values of onset/offset bias (average absolute bias < 6 ms), both on simulated<br> and real sEMG signals. Moreover, the advantages of using the LSTM-MAD algorithm are particularly evident for<br> signals featuring a low to medium SNR.</p> <p><strong>Conclusions</strong>: The presented approach LSTM-MAD revealed excellent performances against TKEO and Stat. The<br> validation carried out both on simulated and real signals, considering normal as well as pathological motor function<br> during locomotion, demonstrated that it can be considered a powerful tool in the accurate and effective recognition/<br> distinction of muscle activity from background noise in sEMG signals.</p> <p> </p>
Resolution, validation and divergence of heterozygous haplotypes from pooled long read sequencing of the diamondback moth (Lepidoptera: Plutellidae)
<p>This data sets includes the full set of intermediate genome assemblies produced during our analyses. We make these available for researchers who may be interested in the variation between assembly results and variation within the study organism (<em>Plutella xylostella</em>) prior to removal during subsequent genome processing.</p>
Feather corticosterone reveals developmental challenges in a long‐term study of juvenile northern spotted owls
<p>1. Corticosterone is a steroid hormone integral to a variety of physiological pathways and is strongly associated with the vertebrate stress–response. In avian species, circulating corticosterone is sequestered into developing feathers and is used as an indicator of energy allocation during feather growth and widely applied in conservation physiology.</p> <p>2. The northern spotted owl (<i>Strix occidentalis caurina</i>) is a federally threatened old–growth forest obligate of conservation concern endemic to the Pacific Northwest of the United States and Canada. The effects of landscape characteristics and individual variation on early development in spotted owls remain unstudied despite long recognition of this knowledge gap and its potential importance to species conservation.</p> <p>3. We quantified corticosterone concentrations in 4,720 feathers from 1,056 juvenile spotted owls across seven study areas between 2001 and 2017. We used an information–theoretic approach to examine the environmental and individual factors related to feather corticosterone in juvenile spotted owls as an indicator of challenges during early development.</p> <p>4. Feather corticosterone was positively related to temperature and precipitation, and negatively related to juvenile mass at banding. We found strong support for an interaction between mass and precipitation, with greater amounts of precipitation being associated with higher levels of feather corticosterone in lighter juveniles. The temperature and precipitation metric with the strongest relationship with feather corticosterone occurred during the fledging period, suggesting that this period presents an energetic challenge for juvenile spotted owls. Greater juvenile mass decreased the effect of precipitation, suggesting that greater mass was important for juveniles to maintain homeostasis during fledgling.</p> <p>5. Feather corticosterone in juvenile spotted owls provided insights to the challenges faced during early development, adding to our understanding of spotted owl life history and potential for population recovery.</p>
A roadmap to durable BCTV resistance using long-read genome assembly of genetic stock KDH13
<p>PacBio Sequence data associated with genetic stock KDH13.Datasets include genome resources and annotated files associated with the manuscript "Long-read genome assembly of Double Haploid Sugar Beet KDH13 provides roadmap for durable genetic resistance to Beet Curly Top Virus". This includes genome assembly, ordered genome assembly, protein predictions, variant call format files for an F1 hybrid (KDH13xKDH19-17).</p>
In-Line Measurement of the Surface Texture of Rolls Using Long Slender Piezoresistive Microprobes
<p>Raw data from the article "In-Line Measurement of the Surface Texture of Rolls Using Long Slender Piezoresistive Microprobes" published in <em>Journal of Sensors and Sensor Systems</em> on 05 Sep 2021<br> <br> All factory measurements were made with the "G" microprobe. In laboratory measurements both the "G" and "W" microprobes were used.</p>
DisFull_Lnc: discover full-length long noncoding RNAs without transcriptional initiation profiles
<p>DisFull_Lnc aims to identify full-length lncRNAs directly from raw RNA-seq data without H3K4me3 profiles from the corresponding sample.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.