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Supporting Information for: Re-evaluating Water Column Reoxygenation in the Aftermath of the End Permian Mass Extinction
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Closing the gap between palaeontological and neontological speciation and extinction rate estimates
<p>Data and code including empirical phylogenetic and fossil data and simulations. </p>
Figure 6 – The top 15 in Brazilian efforts towards achieving a comprehensive extinction risk assessment for its known flora
Figure 6 – The top 15 botanical families with data deficient plant species in Brazil.
Figure 3 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
Figure 3 Most likely migration model and altitudinal habitat maps reporting suitable area for the presence of the species during cold periods. A Most likely migration model. Arrows indicate unidirectional flows (in black) and bidirectional flows (in gray) between populations. B–F Suitable altitudinal habitat maps. In light grey are reported the areas suitable for the presence of the species above a certain altitudinal threshold; the yellow ellipses are schematic drawing of Cryptocephalusbarii populations; dendrograms showing the divergence events among populations, according to the tree in Fig. 1, are superimposed on the maps. At the bottom left of each map are reported: the minimum elevation at which climatic conditions are suitable for the presence of Cryptocephalusbarii (inferred from present knowledge) corresponding to the altitudinal threshold used to draw the suitable areas, and the corresponding estimates of temperature variation in respect to the present. Abbreviations: A.T. = altitudinal threshold; CON = Concarena; PRE = Presolana; ARE = Arera; ALB = Alben; GRI = Grigna; NGR = northern Grigna; SGR = southern Grigna; CG = Corna Grande; PEG = Pegherolo.
Figure 2 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
Figure 2 Maximum clade credibility tree and Minimum-spanning haplotype network. A Minimum-spanning haplotype network. Each colour represents a Cryptocephalusbarii population. Circles represent the different haplotypes; their diameter is proportional to the haplotypes abundance. B Maximum clade credibility tree. Horizontal blue bars represent 95% HPD age confidence intervals for the nodes. Under the main lineage nodes is reported the divergence time in thousands of years before present. Above the nodes Bayesian posterior probabilities > 0.8 are reported, black asterisks indicate Bayesian posterior probabilities values < 0.80. Vertical coloured bars on the right of the tree indicate monophyletic clades, the colours identify the C.barii populations. Under the tree, in blue, the estimated surface temperature for the last 800,000 years (Hansen et al. 2013).
Supplementary material 2 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
: Data type: statistical data
Figure 1 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
Figure 1 Cryptocephalusbarii Burlini, 1948 distribution. A) Geographic location of the Orobie Alps and Cryptocephalusbarii distribution. Yellow dots indicate localities where the species was observed, red dots indicate localities investigated with extensive sampling campaigns in which the species was absent (the source map was downloaded from http://www.geoportale.regione.lombardia.it/ and elaborated with QGIS 3.4.1). B) Cryptocephalusbarii picture acquired using a Canon 450D camera; the multilayered micrographs were processed with Zerene Stacker (Richland, WA, USA).
Figure 5 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
Figure 5 Changes in habitat suitability for Cryptocephalusbarii. Histogram reporting classes of habitat suitability calculated within the Minimum Convex Polygon built on Cryptocephalusbarii presence sites through Ensemble Modelling process. Areas calculated for current and future climatic conditions (2070, 4.5 and 8.5 scenarios) are reported, respectively, in green, orange and red.
Figure 4 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
Figure 4 Predicted suitability for Cryptocephalusbarii for current and future climatic conditions. Predicted suitability resulting from the Ensemble Modelling process performed over bioclimatic variables for Cryptocephalusbarii, with the Minimum Convex Polygon built on the species' presence sites for A current B 2070 – 4.5 scenario of radiative forcing, and C 2070 – 8.5 scenario of radiative forcing.
Supplementary material 1 from: Brunetti M, Magoga G, Iannella M, Biondi M, Montagna M (2019) Phylogeography and species distribution modelling of Cryptocephalus barii (Coleoptera: Chrysomelidae): is this alpine endemic species close to extinction? In: Schmitt M, Chaboo CS, Biondi M (Eds) Research on Chrysomelidae 8. ZooKeys 856: 3-25. https://doi.org/10.3897/zookeys.856.32462
: Data type: statistical model
FIGURE 4 in Lost and Found: Taxonomic revision of the speckled skink (Oligosoma infrapunctatum; Reptilia; Scincidae) species complex from New Zealand reveals a potential cryptic extinction, resurrection of two species, and description of three new species
FIGURE 4. (Continued)
FIGURE 4 in Lost and Found: Taxonomic revision of the speckled skink (Oligosoma infrapunctatum; Reptilia; Scincidae) species complex from New Zealand reveals a potential cryptic extinction, resurrection of two species, and description of three new species
FIGURE 4. (Continued)
FIGURE 4 in Lost and Found: Taxonomic revision of the speckled skink (Oligosoma infrapunctatum; Reptilia; Scincidae) species complex from New Zealand reveals a potential cryptic extinction, resurrection of two species, and description of three new species
FIGURE 4. (Continued)
FIGURE 1. a in Lost and Found: Taxonomic revision of the speckled skink (Oligosoma infrapunctatum; Reptilia; Scincidae) species complex from New Zealand reveals a potential cryptic extinction, resurrection of two species, and description of three new species
FIGURE 1. a) Map showing the districts in New Zealand.
Supplementary material 1 from: Tattoni C (2019) Nomen omen. Toponyms predict recolonization and extinction patterns for large carnivores. Nature Conservation 37: 1-16. https://doi.org/10.3897/natureconservation.37.38279
: Data type: statistical data
Figure 2 from: Costa WJEM (2019) Description of a new species of cynopoeciline killifish (Cyprinodontiformes, Aplocheilidae), possibly extinct, from the Atlantic Forest of south-eastern Brazil. ZooKeys 867: 73-85. https://doi.org/10.3897/zookeys.867.34034
Figure 2 Male fin morphology and life colour patterns in Leptopanchax. A coloured pencil drawing illustrating L.sanguineus sp. nov. in life, about 20 mm SLBL.splendens, UFRJ 6902, 22.7 mm SLCL.aureoguttatus, UFRJ 6331, 22.3 mm SLDL.itanhaensis, UFRJ 6453, 20.7 mm SLEL.citrinipinnis, UFRJ 8899, 20.6 mm SLFL.opalescens, UFRJ 8986, 20.2 mm SL.
Figure 3 from: Costa WJEM (2019) Description of a new species of cynopoeciline killifish (Cyprinodontiformes, Aplocheilidae), possibly extinct, from the Atlantic Forest of south-eastern Brazil. ZooKeys 867: 73-85. https://doi.org/10.3897/zookeys.867.34034
Figure 3 Geographical distribution of L.sanguineus sp. nov. (white triangle) and L.splendens (black symbols: star, type locality; dot, 2018 collection site).
Fig. 5 in Post-extinction survivor fauna from the lowermost Famennian of eastern North America
Fig. 5. Digital images from scanning electron microscope of conodont P1 (Pa) elements from the Hanover Shale Member of the Java Formation, brachiopod bed approximately 1.4 m above the Frasnian–Famennian boundary at Glade Creek, Bartz Road, Wyoming County, New York. All × 60. A–C. Palmatolepis triangularis Sannemann, 1955. A, B. Lower view and inverse mirror−image of mold of upper surface of P1 (Pa) element, NYSM 15682. C. Inverse mirror−image of mold of upper surface of P1 (Pa) element, NYSM 15683. D–F. Icriodus alternatus alternatus Branson and Mehl, 1934. D, E. Upper and oblique outer views of broken P1 (Pa, I) element showing internal mold of posterior end, NYSM 15684. F. Upper view of P1 (Pa, I) element with missing inner posterior margin, NYSM 15685. G. Icriodus alternatus helmsi Sandberg and Dreesen, 1984, upper view of fractured and covered P1 (Pa, I) element, NYSM 15686 (specimen lost).
Fig. 1. A in Post-extinction survivor fauna from the lowermost Famennian of eastern North America
Fig. 1. A. Location of study sites in western New York showing where the Upper Devonian Hanover Shale is exposed. B. Schematic diagram of general facies, lithostratigraphy, and position of the lowermost Famennian brachiopod bed in upper Hanover. Abbreviations: cz, conodont zones; PC, Pipe Creek Shale; t, Lower Pa. triangularis Zone; 12 and 13 are Frasnian Montagne Noire conodont zones of Klapper (1989).
Figure 2 in Extinct Neuropterida of Brazil (Insecta: Neuroptera, Megaloptera, Raphidioptera)
Figure 2 Examples of Neuroptera fossil from Crato Formation. a) Holotype of Limaia conspicua Martins-Neto & Vulcano, 1989a (Chrysopidae: Limaiinae); b) Holotype of Makarkinia irmae Machado, Freitas & Ribeiro,2021 (Kalligrammatidae: Kalligrammatinae); c) Holotype ofKarenina breviptera Martins-Neto, 1997 (Mesochrysopidae:Allopterinae); d) Holotype of Cratoneura longissima Martins-Neto, 1992b (Myrmeleontidae: Araripeneurinae); e) Holotype of Diegopteryx raptoria Martins-Neto in Martins-Neto & Rodrigues, 2010 (Myrmeleontidae: Araripeneurinae); f) Holotype of Neurastenyx conani Martins-Neto in Martins-Neto & Rodrigues, 2010 (= Baisopardus conani) (Palaeoleontidae); g) Holotype of Blittersdorffta volkheimeri Martins-Neto & Vulcano, 1989c (Myrmeleontidae: Pseudonymphinae); h) Holotype of Palaeoleon araripensis Martins-Neto, 1992b (= Baisopardus araripensis) (Palaeoleontidae);i) Holotype of Paraneurastenyx ascalaphyx Martins-Neto, 1998 (Palaeoleontidae);j) Holotype of Pulchroptilonia espatifata MartinsNeto, 1997 (Psychopsidae).
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International Brain Laboratory public data
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