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Figure 3. k in Seasonal community structure of the molluscan macrofauna at the marine-lagoonal environmental transition at Kalloni solar saltworks (Lesvos Island, NE Aegean Sea, Greece)
Figure 3. k-dominance curves of the sampling sites in each season.
Figure 1 in Seasonal community structure of the molluscan macrofauna at the marine-lagoonal environmental transition at Kalloni solar saltworks (Lesvos Island, NE Aegean Sea, Greece)
Figure 1. Map of the study area, indicating the sampling sites.
Figure 6 in Seasonal community structure of the molluscan macrofauna at the marine-lagoonal environmental transition at Kalloni solar saltworks (Lesvos Island, NE Aegean Sea, Greece)
Figure 6. The zones of confinement in the study area.
Fig. 3 in A Population Outbreak ofLichnia gallardoiGutiérrez, 1943 (Coleoptera: Scarabaeidae) in the Matorral Shrublands of the Transitional Coastal Desert of Chile
Fig. 3. Habitat of Lichnia gallardoi in the semiarid locality of Alcones, Coquimbo Region, Chile.
Figs. 1–2. Lichnia gallardoi, female. 1 in A Population Outbreak ofLichnia gallardoiGutiérrez, 1943 (Coleoptera: Scarabaeidae) in the Matorral Shrublands of the Transitional Coastal Desert of Chile
Figs. 1–2. Lichnia gallardoi, female. 1) Dorsal view; 2) Lateral view.
Figure 1 in Ontogenetic transition from unicuspid to multicuspid oral dentition in a teleost fish: Astyanax mexicanus, the Mexican tetra (Ostariophysi: Characidae)
Figure 1. First-generation dentition in Astyanax mexicanus. Asterisks indicate positions of teeth. A, 5 days postfertilization (dpf) (4.5 mm total length (TL, measured to the nearest 0.1 mm with calipers prior to fixation)) showing one tooth on each jaw quadrant, left side. M, Meckel's cartilage; P, premaxilla. B, 10 dpf (5.2 mm TL) showing three teeth on the right premaxilla; one tooth is also visible on the lower jaw. C, 28 dpf (7.8 mm TL) showing five attached teeth, and one unattached, on the right premaxilla. D, 40 dpf (9.2 mm TL) showing signs of resorption (left arrow) and replacement by a second generation of unicuspid teeth (right arrow) on the left premaxilla. Scale bars = 100 µm.
Figure 10 in Ontogenetic transition from unicuspid to multicuspid oral dentition in a teleost fish: Astyanax mexicanus, the Mexican tetra (Ostariophysi: Characidae)
Figure 10. Age in days (A), total length (TL) in mm (B) and maximum tooth height in mm (C) at the onset of tooth generations 1–4.
Figure 6 in Ontogenetic transition from unicuspid to multicuspid oral dentition in a teleost fish: Astyanax mexicanus, the Mexican tetra (Ostariophysi: Characidae)
Figure 6. Features of the dentition of Astyanax mexicanus as a function of age in days. A, total number of teeth. B, numbers of unicuspid and multicuspid teeth. C, total number of cusps.
Figure 2 in Ontogenetic transition from unicuspid to multicuspid oral dentition in a teleost fish: Astyanax mexicanus, the Mexican tetra (Ostariophysi: Characidae)
Figure 2. Order of appearance of the first-generation dentition on one half (right) of the jaw in Astyanax mexicanus. A, schematic of the premaxillary and lower jaw. Order is indicated by numbers. B, graph of tooth appearance patterns on the premaxilla. Numbers represent tooth positions and time runs vertically down. C, graph of tooth appearance patterns on the lower jaw. Abbreviations: P, premaxilla; LJ, lower jaw, C, caudal; R, rostral.
Figure 9 in Ontogenetic transition from unicuspid to multicuspid oral dentition in a teleost fish: Astyanax mexicanus, the Mexican tetra (Ostariophysi: Characidae)
Figure 9. Number of cusps per tooth (calculated as total number of cusps/total number of teeth) as a function of age in da ys (A) and log total length (TL) in mm (B).
Calpain DEK1 acts as a developmental switch gatekeeping cell fate transitions
<p>This is the supplementary data archive for our study showing that:</p> <p><em><strong>Calpain DEK1 acts as a developmental switch gatekeeping cell fate transitions</strong></em></p> <p><strong>Abstract:</strong> Calpains are cysteine proteases that control cell fate transitions. Although calpains are viewed as modulatory proteases displaying severe, pleiotropic phenotypes in eukaryotes, human calpain targets are also directed to the N-end rule degradatory pathway. Several of these destabilized targets are transcription factors, hinting at a gene regulatory role. Here, we analyze the gene regulatory networks of <em>Physcomitrium</em> <em>patens</em> and characterize the regulons that are deregulated in <em>DEK1</em> calpain mutants. Predicted cleavage patterns of regulatory hierarchies in the five DEK1-controlled subnetworks are consistent with the gene’s pleiotropy and the regulatory role in cell fate transitions targeting a broad spectrum of functions. Network structure suggests DEK1-gated sequential transition between cell fates in 2D to 3D development. We anticipate that both our method combining phenotyping, transcriptomics and data science to dissect phenotypic traits and our model explaining the calpain’s role as a switch gatekeeping cell fate transitions will inform biology beyond plant development.</p>
Antibiotic phase transition curves
<p>Phase transitions are an important and extensively studied concept in physics. The insights derived from understanding phase transitions in physics have also recently and successfully been applied to a number of different phenomena in biological systems. Here, we provide a brief review of phase transitions and their role in explaining biological processes ranging from collective behavior in animal flocks to neuronal firing. We also highlight a new and exciting area where phase transition theory is particularly applicable: population collapse and extinction. We discuss how phase transition theory can give insight into a range of extinction events such as population decline due to climate change or microbial responses to environmental stressors such as antibiotic treatment.</p>
Figure 3 from: Watts CHS, Hendrich L, Balke M (2016) A new interstitial species of diving beetle from tropical northern Australia provides a scenario for the transition of epigean to stygobitic life (Coleoptera, Dytiscidae, Copelatinae). Subterranean Biology 19: 23-29. https://doi.org/10.3897/subtbiol.19.9513
Figure 3 - Right lateral aspect of head of Exocelina species: Exocelina ferruginea (A), E. saltusholmesensis sp. n. (B), Exocelina abdita (C).
Figure 1 from: Watts CHS, Hendrich L, Balke M (2016) A new interstitial species of diving beetle from tropical northern Australia provides a scenario for the transition of epigean to stygobitic life (Coleoptera, Dytiscidae, Copelatinae). Subterranean Biology 19: 23-29. https://doi.org/10.3897/subtbiol.19.9513
Figure 1 - Habitus of Exocelina species: Exocelina ferruginea (A), Exocelina punctipennis (B), Exocelina saltusholmesensis sp. n. (C).
Supplementary material 4 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: statistical data
Supplementary material 5 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: measurement
Supplementary material 3 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: measurements
Supplementary material 2 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: parameters data
Supplementary material 1 from: Azzaro M, Packard TT, Monticelli LS, Maimone G, Rappazzo AC, Azzaro F, Grilli F, Crisafi E, La Ferla R (2019) Microbial metabolic rates in the Ross Sea: the ABIOCLEAR Project. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 441-475. https://doi.org/10.3897/natureconservation.34.30631
: Data type: measurement
Supplementary material 1 from: Petriccione B, Bricca A (2019) Thirty years of ecological research at the Gran Sasso d'Italia LTER site: climate change in action. In: Mazzocchi MG, Capotondi L, Freppaz M, Lugliè A, Campanaro A (Eds) Italian Long-Term Ecological Research for understanding ecosystem diversity and functioning. Case studies from aquatic, terrestrial and transitional domains. Nature Conservation 34: 9-39. https://doi.org/10.3897/natureconservation.34.30218
: Data type: measurements
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.