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Supplementary data for "Armored with skin and bone: A combined histological and µCT study of the exceptional integument of the Antsingy leaf chameleon Brookesia perarmata (Angel, 1933)"
<p>This project contains the supplementary µCT-scans of the whole body and a lateral flank integumentary armor of <em>Brookesia perarmata</em> (Angel, 1933) (Squamata: Iguania: Chamaeleonidae) belonging to the following publication:</p> <p>Schucht P, Rühr PT, Geier B, Glaw F & M LAmbertz (<strong>2020</strong>): Armored with skin and bone: A combined histological and µCT study of the exceptional integument of the Antsingy leaf chameleon <em>Brookesia perarmata</em> (Angel, 1933). <em>Journal of Morphology</em>. doi: <a href="https://onlinelibrary.wiley.com/doi/full/10.1002/jmor.21135">10.1002/jmor.21135</a>.</p> <p> </p> <p><strong>Whole body scan:</strong></p> <ul> <li>specimen: ZSM 17/2006, Zoologische Staatssammlung München</li> <li>machine: phoenix nanotom m (GE Measurement & Control)</li> <li>scan settings: <ul> <li>tube voltage = 110 kV</li> <li>ube current = 70 μA</li> <li>target = tungsten</li> <li>no filter</li> <li>total sample rotation = 360°</li> <li>angular step size = 0.24°</li> <li>exposure time = 750 ms</li> <li>binning = 1</li> <li>averaging = 4</li> <li>voxel size = 37.8 μm</li> </ul> </li> <li>filename: Schucht_B_perarmata_whole.tif</li> </ul> <p> </p> <p><strong>Lateral flank integumentary armor scan:</strong></p> <ul> <li>specimen: ZSM 862/2000, Zoologische Staatssammlung München</li> <li>machine: Skyscan 1272 device (Bruker microCT)</li> <li>scan settings: <ul> <li>tube voltage = 70 kV</li> <li>ube current = 142 μA</li> <li>target = tungsten</li> <li>filter = Al 0.5 mm</li> <li>total sample rotation = 180°</li> <li>angular step size = 0.19°</li> <li>exposure time = 1925 ms</li> <li>binning = 2x2</li> <li>averaging = 8</li> <li>random movement = 15</li> <li>voxel size = 4.4 μm</li> </ul> </li> <li>filename: Schucht_B_perarmata_osteoderm.tif</li> </ul>
Trento 1936 - Building 1933
<u>Coordinates</u>: N/A <br><u>Length</u>: 30.95 m<br><u>Width</u>: 9.35 m<br><u>Height</u>: 15.92 m<br><u>Points</u>: 16 <br><u>Vertices</u>: 84 <br><u>Primitives</u>: 28 <br><br><u>Main Files:</u><br><table><tbody><tr><th>Filename</th><th>.glb</th><th>.xml</th><th>.obj</th></tr><tr><td><a href="https://zenodo.org/api/records/12691848/files/building_1933.glb/content">building_1933.glb</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933.glb/content">Link</a></td><td></td><td></td></tr><tr><td><a href="https://zenodo.org/api/records/12691848/files/building_1933.obj/content">building_1933.obj</a></td><td></td><td></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933.obj/content">Link</a></td></tr><tr><td><a href="https://zenodo.org/api/records/12691848/files/11574281_edm.xml/content">11574281_edm.xml</a></td><td></td><td><a href="https://zenodo.org/api/records/12691848/files/11574281_edm.xml/content">Link</a></td><td></td></tr><tr><td><a href="https://zenodo.org/api/records/12691848/files/11574281_metsmods.xml/content">11574281_metsmods.xml</a></td><td></td><td><a href="https://zenodo.org/api/records/12691848/files/11574281_metsmods.xml/content">Link</a></td><td></td></tr></tbody></table><br><br><u>Thumbnails:</u><br><table><tbody><tr><th>Perspective</th><th>1000x1000</th><th>512x512</th><th>256x256</th><th>128x128</th></tr><tr><td>Perspective 1</td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_1.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_1_512x512.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_1_256x256.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_1_128x128.png/content">Link</a></td></tr><tr><td>Perspective 2</td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_2.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_2_512x512.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_2_256x256.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_2_128x128.png/content">Link</a></td></tr><tr><td>Perspective 3</td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_3.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_3_512x512.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_3_256x256.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_3_128x128.png/content">Link</a></td></tr><tr><td>Perspective 4</td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_4.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_4_512x512.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_4_256x256.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_4_128x128.png/content">Link</a></td></tr><tr><td>Perspective Top</td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_top.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_top_512x512.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_top_256x256.png/content">Link</a></td><td><a href="https://zenodo.org/api/records/12691848/files/building_1933_perspective_top_128x128.png/content">Link</a></td></tr></tbody></table><br><br><br><u>Changelog</u>: <br> - v<a href="https://doi.org/10.5281/zenodo.12542526">0.0.2</a>: Thumbnails added, Description updated with Link Tables.<br> - v<a href="https://doi.org/10.5281/zenodo.12691848">0.0.3</a>: Added XMLs for Europeana Data Model (EDM) and MetsMods.<br>
Soil movement across black grama and mesquite ecotone transects in the Jornada Basin, southern New Mexico, USA, 1933-2011
This package contains data from a study that measured long-term soil movement in areas undergoing mesquite invasion on the Jornada Experimental Range from 1933-2011. Data consist of height measurements of soil on two long-term transects established in the Natural Revegetation Exclosure (NatReveg) in 1933 and an exclosure in Pasture 8b in 1935. In 1933, about half of the NatReveg exclosure was covered with mesquite dunes. Grasses dominated the non-dune portion, but mesquite plants were present. Approximately one-third of the NatReveg site exclosure was sprayed with 2,4,5-T herbicide for mesquite control in 1966-68. Additional herbicide treatments were conducted upon the sprayed portion in 1969-72. The 1731-m NatReveg exclosure transect runs north-south through the center of the exclosure and extends 61 m (200ft) beyond the boundary fence on either end. The 457-m Pasture 8b transect is oriented WSW-ENE and was established in an area where mesquite dunes were large and well established. The predominant soils in this exclosure are deep loamy sands. Soil movement was measured by the distance between the soil surface and a notch in 50 cm T-posts located every 15.2 m (50 ft). Transects were measured in 1950 (8b only), 1955 (8b only), every five years from 1980-2000, and most recently in 2011. Most steel posts were re-measured at these intervals, but some were lost due to excavation or burial. These were replaced with a new baseline notch height initiated on the posts. Data correspond to each year of collection, as well as measures (in cm) of soil deposition or deflation during the intervals. This study is complete. For further information, see: Gibbens, R.P., J.M. Tromble, J.T. Hennessy, and M. Cardenas, 1983. "Soil movement in mesquite dunelands and former grasslands of southern New Mexico from 1933 to 1980." Journal of Range Management 36:145-148.
Fig. 12 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 12. Guestphalinus elephantinus Fend & Rodriguez sp. nov. A–B (upper) from Clearwater River, WA; C, H, K from Shale Creek, WA (type locality); D–E from Satsop River, WA; B (lower), F–G, N–Q from Guadalupe Creek, CA; I–J, L–M from Peavine Ridge, OR. A. Anterior end of cleared worm. B. Chaetae in II-III, comparing worms from northern (upper) and southern (lower) populations. C. Dorsal chaetae in II. D. The outer chaeta in II, showing the "secondary nodulus". E–F. Inner dorsal chaeta in II; E shows folded keel. G. Modified dorsal chaetae in II. H. Posterior ventral chaeta. I. Posterior ventral chaeta with bifid tip. J. Transverse section of anterior segment, showing lobes of pharyngeal glands. K. Body wall in anterior segment. L. Spermathecal pore. M. Male pore. N. Ectal part of spermatheca from a dissected, mated worm. O. Expanded atrial duct (type 2 penis?) at male pore. P. Copulatory gland. Q. Female funnel and pore on intersegment 10/11. Scale bars: A = 1 mm; B–I, K–M = 50 µm; J, N–Q = 100 µm.
Fig. 13 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 13. BA consensus tree derived from the concatenated sequences of COI, 16S rRNA and 28S rRNA genes. Numbers beside internal branches indicate BA posterior probabilities (≥ 0.90) and ML bootstrap values (≥ 70%). The geographical location for two specimens of K. hexatheca Altman, 1936 is given under the taxon name.
Fig. 11 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 11. Guestphalinus elephantinus Fend & Rodriguez sp. nov. A. Ventral view of two worms from Shale Creek, WA (type locality); upper drawing is the holotype, lower is a post-reproductive worm. B. Ventral view of segment IX, showing genital field of a mature worm from Guadalupe Creek, CA; secretory openings of 5 glands are visible, in addition to paired male and spermathecal pores. C. Anterior end, from Peavine Ridge spring, OR, showing position of chaetae in II-IV. D. Anterior end of worm from Middle Fork Satsop River, WA. E. Reproductive organs of a mated worm from Shale Creek (holotype). F. Segment IX of an unmated worm, Peavine Ridge. G. Atrium and spermatheca in IX of a mated, but slightly post-mature worm from Clearwater River, WA; sperm present in spermatheca, but atrium is reduced in size. H. Reproductive organs in segments VIII–XII of a mated, mature worm from Guadalupe Creek, CA.
Fig. 7 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 7. Guestphalinus exilis Fend & Rodriguez sp. nov., external characters. A–C, E–G from Squaw Creek, CA (the type locality); D, H from South Fork Eel River, CA; I from Stony Creek, CA. A–B. Ventral views of two worms, showing positions of genital pores: A is partially-mature, with 3 glands opening around male and spermathecal pores; B is from a reproductively-mature worm, dashed line encloses the non-clitellar genital field with 5 glands opening around spermathecal and male pores. C–D. Anterior end, showing orientation of chaetae. E–G. Selected chaetae from typical specimens; G shows relative position of dorsal chaetae in II and III. H–I. Selected chaetae from partially-mature worms. Chaetae are numbered by segment (Roman numerals), followed by "d" (dorsal) or "v" (ventral). Scale bars: A–B = 2 mm; C–D = 1 mm; E–I = 100 Mm.
Fig. 5 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 5. Kincaidiana smithi Fend & Rodriguez sp. nov., from the type locality. B–C, I–L, N–O from sagittal sections; D–H, M from dissections. A. Ventral view of an entire worm, stained with hematoxylin, showing positions of genital pores. B. Body wall in segment III, showing longitudinal and transverse muscle layers. C. Nephridial funnel and postseptal expansion. D. Chaetae in V dorsal. E. IV ventral. F–G. Chaetae in posterior segments; (F) is detail of tip, showing slight keel. H. Spermatheca. I. Junction of spermathecal "duct" and "ampulla"; sperm are in the ampullar part. J. Ectal end of spermathecal duct, with sperm lined up along epithelium. K. Spermathecal vestibule and ectal end of duct, with muscular sphincter. L. Atrium with prostate glands. M–N. Penis and male porophore. O. Vas deferens joining atrium near middle. Scale bars: A = 1 mm; B–C, G, J–L, O = 100 µm; D–F = 50 µm; H–I, M–N = 200 µm.
Fig. 10 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 10. Guestphalinus elephantinus Fend & Rodriguez sp. nov., various sites, arranged approximately north-south; paired chaetae; d = dorsal bundle, v = ventral. A. From Shale Creek, WA (type locality). B–C. From Clearwater River, WA; C shows II and III in relative positions at top. D. West Fork Satsop River, WA. E. Tucannon River, WA; II dorsal bundle with 1 replacement chaeta. F. Euchre Creek, OR. G. Mule Creek at Rogue River, OR; II and III dorsal are shown in relative positions. H. Spring at Peavine Ridge, OR. I–J. A mature and immature worm from Guadalupe Creek, CA; II and III shown in relative positions; XL ventral and C ventral in I have partially-developed replacements; II ventral chaetae partially-developed in J. Scale bars: 100 µm.
Fig. 6 in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 6. Guestphalinus wiardi (Michaelsen, 1933); A–E a sectioned worm from Slovenia, Hrabě's collection; F–I, a dissected Italian specimen. A. Male duct and spermatheca in IX, reconstructed from sections; pore from a copulatory gland (not shown) opens next to spermathecal pore. B. Atrium and male porophore. C. Copulatory gland. D. Spermathecal pore and duct. E. Anterior male funnel with vas deferens entering pre-atrial segment. F. Posterior ventral chaeta, showing grooved dorsal tooth. G. Reproductive organs in IX-XI, figure rotated to face to right. H. Detail of G, showing position of copulatory gland, from median view. I. Branched lateral blood vessel in posterior segment. Scale bars: A, G–H = 200 Mm; B, E, I = 100 Mm; C–D, F = 50 Mm.
Fig. 2. Kincaidiana hexatheca Altman, 1936 from various sites. A, K–O in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 2. Kincaidiana hexatheca Altman, 1936 from various sites. A, K–O from the sagittally sectioned lectotype, Loomis Lake, WA; B–C from Hoh River, WA; D from Inglenook Fen, CA; E–I from Big Creek, OR; J from O'Brien, OR. A-I. Tips of chaetae in anterior segments. A. IV ventral. B. VI dorsal. C. V ventral. D. V dorsal. E. IV dorsal. F. V ventral, frontal view. G. V ventral, chaeta with keel folded over. H. Dorsal, posterior segment. I. XV, ventral. J. Transverse section of anterior segment, showing 3-lobed pharyngeal gland. K. Ringed proboscis. L. Body wall in anterior segment, showing bands of circular muscle. M. Spermathecal ampulla, with concentrated sperm. N. Male porophore and penis. O. Atrium, prostate glands and vas deferens. Scale bars: A–I = 50 µm; J, L–O = 200 µm; K = 500 Mm.
Fig. 3. Kincaidiana hexatheca Altman, 1936, reproductive organs. A–B in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 3. Kincaidiana hexatheca Altman, 1936, reproductive organs. A–B. From Hoh River, WA; (A) segments IX-XI; (B) atrium and spermathecae with expanded ampullae in IX-X. C–D. From Rogue River, OR; (C) reproductive organs in IX-XI from an atypical worm with long atria; (D) atrium and spermatheca in IX, from a typical worm.
Fig. 1. Kincaidiana hexatheca Altman, 1936 from various sites. A–B in On Kincaidiana Altman, 1936 and Guestphalinus Michaelsen, 1933 (Annelida, Clitellata, Lumbriculidae), with the descriptions of three new species
Fig. 1. Kincaidiana hexatheca Altman, 1936 from various sites. A–B. Complete worms, ventral view of anterior segments, from McKenzie River, OR (A), and from Big Creek, OR (B). C–M. Representative (mostly anterior) chaetae from different populations (ordered approximately north-south); dorsal chaetae with tips upward, ventrals with tips down. C. Hoh River, WA. D. Pool at Bogachiel River, WA. E. Salmon Creek watershed, WA, anterior dorsal pair. F–G. Two specimens from Big Creek, OR; tip of one dorsal chaeta with keel folded over. H. Rogue River, OR. I. From a Darlingtonia bog, O'Brien, OR. J–K. Two specimens from spring near Mule Creek, OR; K is from a smaller specimen, with simple-pointed chaetae. L. Illinois River, OR; older chaetae simple-pointed (worn?), replacements bifid. M. Inglenook Fen, CA. Scale bars: A–B = 2 mm; C–M = 200 Mm.
Fig. 10. Asterostegus tuberculatus Mortensen, 1933 in A taxonomic review of the genus Asterostegus (Echinodermata: Ophiuroidea), with the description of a new species
Fig. 10. Asterostegus tuberculatus Mortensen, 1933 (SMNH 123461), SEM photographs. A-D. Vertebra from middle portion of arm: distal view (A), aboral view (B), oral view (C) and lateral view (D). E-H. Vertebrae from distal portion of arm: distal view (E), aboral view (F), oral view (G) and lateral view (H). Abbreviations: K = knob, OB = oral bridge.
Fig. 7. Asterostegus tuberculatus Mortensen, 1933 in A taxonomic review of the genus Asterostegus (Echinodermata: Ophiuroidea), with the description of a new species
Fig. 7. Asterostegus tuberculatus Mortensen, 1933 (SMNH 123461). A. Aboral disc and proximal portion of arm. B. Aboral periphery of disc. C. Aboral central disc. D. Oral disc. E. Jaws. F. Oral periphery of disc. G. Oral periphery of disc, skin removed to observe internal ossicles, oral interradial plates of the same row are connected by black bars. H. Lateral disc, an arrow indicates madreporite. I. Aboral proximal portion of arm. Abbreviations: ADS = adoral shield, GEO = granule-shaped external ossicle, GS = genital slit, LB = lateral bar, OIP = oral interradial plate, OP = oral papillae, Te = teeth, Ten = tentacle, Tu = tubercle.
Fig. 9. Asterostegus tuberculatus Mortensen, 1933 in A taxonomic review of the genus Asterostegus (Echinodermata: Ophiuroidea), with the description of a new species
Fig. 9. Asterostegus tuberculatus Mortensen, 1933 (SMNH 123461). A. Aboral middle portion of arm. B. Aboral distal portion of arm. C. Oral proximal portion of arm. D. Oral middle portion of arm. E. Oral distal portion of arm. F. Lateral distal portion of arm. Abbreviations: AS = arm spine, LAP = lateral arm plate, Tu = tubercle.
Fig. 8. Cyclops lacustris G.O. Sars, 1863. A−B in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 8. Cyclops lacustris G.O. Sars, 1863. A−B. ♀. A. Leg 1, frontal (ZMO: lectotype designated herein). B. Leg 4, caudal – distal margin of the first and second exopodal segments bearing spinules on the frontal surface only (ZMO: Sars Coll. 12977 ♀-2). C−F. Ƌ. C. Anal somite and caudal rami, ventral (ZMO: Sars Coll. 12977 Ƌ-1). D. Urosomites 1̅4, ventral (ZMO: Sars Coll. 12977 Ƌ-1). E. Antennal coxobasis, caudal (ZMO: Sars Coll. 12976 Ƌ-1). F. Maxillulary palp (ZMO: Sars Coll. 12976 Ƌ-1). Scale bars = 100 µm.
Fig. 6 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 6. Cyclops bohater Koźmiński, 1933, copepodid IV, ♀. A−C. Antennule, ventral. A. Segments 1̅5 (I̅XVI), arrow points to long anterodistal seta of ancestral segment XIV. B. Segments 6̅8 (XVII̅ XXIV). C. Segments 9̅10 (XXV̅XXVIII). D. Leg 2, caudal. E. Leg 3, caudal. All drawings show specimen from Latvia (Lake Brigene ̅ MIZ 2/2016/1). Scale bar = 100 µm.
Fig. 5 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 5. Cyclops bohater Koźmiński, 1933, Ƌ. A. Maxillulary palp. B. Maxilliped syncoxopodite, frontal. C. Leg 1, frontal. D. Leg 2, slender spine of first exopodal segment and robust spines of exopodal segments 2 and 3. E. Exopodal armature of leg 3. F. Leg 4 coxopodite, basipodite and intercoxal sclerite, caudal. All drawings show a paralectotype (NHMUK 2016. 40). Scale bars = 100 µm.
Fig. 7. Cyclops lacustris G.O. Sars, 1863 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 7. Cyclops lacustris G.O. Sars, 1863, ♀. A. Habitus, dorsal (SMNK: 9567). B−C. Urosome, ventral (Lake Aspern, Norway ̅ MIZ 2/2016/20). B. Urosomites 1̅4. C. Anal somite and caudal rami. D. Antennular segments 12̅17, ventral (Lake Aspern, Norway ̅ MIZ 2/2016/20). E−F. Antennal coxobasis, caudal. E. ♀ from Lake Mjøsa, Norway (ZMO: Sars Coll. 12977 ♀-2). F. ♀ from Lake Aspern, Norway (MIZ 2/2016/20). G−H. Maxillulary palp. G. ♀ from Lake Mjøsa, Norway (ZMO: Sars Coll. 12977 ♀-2). H. ♀ from Lake Aspern, Norway (MIZ 2/2016/20). Scale bars: A̅H = 100 µm.
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