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4 results for “3D brain reconstruction”
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas
Open the record for dataset details and reuse information.
muBrain - a 3D volumetric reconstruction of the mid-fetal brain
<h2><strong>File descriptions</strong></h2> <h3><strong>Volumes:</strong></h3> <table> <tbody> <tr> <td><strong>uBrain-volume.nii.gz</strong></td> <td>microBrain template volume. A 3D reconstruction of the right hemisphere of a mid-fetal brain. Voxel size: 0.15mm.</td> </tr> <tr> <td><strong>uBrain-atlas-labels.nii.gz</strong></td> <td>microBrain brain tissue labels. Brain tissue labels (n=20) for the microBrain volume.</td> </tr> <tr> <td><strong>brain-tissue-labels.txt</strong></td> <td>LUT for brain tissue labels</td> </tr> </tbody> </table> <h3><strong>Surfaces:</strong></h3> <table> <tbody> <tr> <td><strong>uBrain.R.outer.surf.gii</strong></td> <td>outer (pial) cortical surface of the microBrain volume</td> </tr> <tr> <td><strong>uBrain.R.inner.surf.gii</strong></td> <td>inner (white) cortical surface of the microBrain volume</td> </tr> <tr> <td><strong>uBrain.cortical-atlas.fetal36w-template.label.gii</strong></td> <td>microBrain cortical atlas labels projected onto the 36w timepoint of the <a href="https://gin.g-node.org/kcl_cdb/dhcp_fetal_brain_surface_atlas">dHCP fetal surface template</a></td> </tr> <tr> <td><strong>cortical-labels.txt</strong></td> <td>LUT for cortical atlas labels.</td> </tr> </tbody> </table> <h3><strong>Microarray data:</strong></h3> <table> <tbody> <tr> <td><strong>uBrain-processed-lmd-data.csv</strong></td> <td>LMD microarray data from the <a href="https://www.brainspan.org/lcm/search/index.html">BrainSpan</a> atlas aligned to the microBrain cortical labels. </td> </tr> </tbody> </table>
Dataset related to aticle "Additive Fabrication of a Vascular 3D Phantom for Stereotactic Radiosurgery of Arteriovenous Malformations"The database contains 3D models in STL file format of a patient-specific brain arteriovenous malformation phantom reconstructed from computed tomography scans.
<p><em>The database contains 3D models in STL file format of a patient-specific brain arteriovenous malformation phantom reconstructed from computed tomography scans.</em></p>
BRAIN Journal-Participative Teaching with Mobile Devices and Social Networks for K-12 Children-Figure 3. Augmented Reality with archaeological stratigraphy (a prehistoric house and a Roman villa reconstructed in 3D)
<p>The third stage was represented by the 3D virtual reconstruction process of the historical contexts, in our case a prehistoric village and a complete Roman villa rustica, with the help of students from the Design Department, NUA, coordinated by Professor Arch. Andreea Hasnaş. The AR application was created and tested on two commercial AR platforms, Layar and Junaio, and recently moved on the Aurasma platform (https://www.aurasma.com/). The POIs were augmented with the 3D virtual reconstructions, and also with 2D images and videos representing 3D virtual tours and technological processes (Figures 3, 4, 5). The AR application was connected to teachers’ emails and to Twitter, Facebook and Google+ project’s pages. </p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.