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Pulse amplitude modulated (PAM) 5-minute chlorophyll fluorescence (ChlF) with accompanying environmental variables from the GCE-LTER Keenan Field site on Sapelo Island, GA in July 2020
Pulse amplitude modulated (PAM) chlorophyll fluorescence (ChlF) from July 11, 2020 to July 27, 2020 collected over a Spartina alterniflora marsh located on the western side of Sapelo Island bounded by the Duplin River. PAM ChlF were processed in WinControl-3.25. Additional biophysical variables included are photosynthetically active radiation (PAR) from onsite quantum sensors (Licor-192), and tide height from an onsite pressure transducer (Hobo U20).
Lower Altamaha River Spartna alterniflora aboveground biomass estimates from Landsat 5 TM imagery
We used gap-filled monthly observations of Spartina alterniflora aboveground biomass derived from Landsat 5 and Landsat 8 satellite imagery from 1984-2018 to analyze temporal patterns in biomass in comparison to air temperature, precipitation, river discharge, nutrient input, sea level, and drought index for a southeastern US salt marsh. Satellite imagery data were downloaded from the USGS Earth Explorer data portal and initially processed with L3Harris Geospatial ENVI software. This database contains the estimates of above-ground Spartina alterniflora biomass within the freshwater tidal reach of the Altamaha River estuary on the Southeastern Atlantic coast of Georiga, USA. Work is ongoing to expand these data to cover the entire Georgia coast.
Stream water chemistry data for Green Lake 5 Rock Glacier, 1998 - ongoing.
This is a summary of major ion concentrations for stream water samples collected at the Green Lake 5 Rock Glacier, near Green Lake 5 in the Boulder County Watershed Green Lakes Valley.
PIE LTER 5-minute marsh water table height at Shad Creek, Rowley, MA from May-November 2020.
Measurements of water table height in the Shad Creek marsh located near the Shad Creek eddy flux tower, Rowley, MA. Measurements were taken every 5 minutes at each logger along a transect of water level loggers running perpendicular to the Shad Creek stream bank at Shad Creek from May-November 2020.
PIE LTER 5-minute marsh water table height at Shad Creek, Rowley, MA from April-October 2021.
Measurements of water table height in the Shad Creek marsh located near the Shad Creek eddy flux tower, Rowley, MA. Measurements were taken every 5 minutes at each logger along a transect of water level loggers running perpendicular to the Shad Creek stream bank at Shad Creek Island from April-October 2021.
Hubbard Brook Experimental Forest: Chemistry of Precipitation – Monthly Fluxes, Watershed 5, 1964 - ongoing
These data are monthly fluxes of solutes in precipitation collected at the Hubbard Brook Experimental Forest and are a part of the Hubbard Brook Watershed Ecosystem Record (HBWatER), which is a long-term record of stream and precipitation chemistry and volume. The solute fluxes in precipitation are calculated as the product of precipitation volume and solute concentrations. There are nine gaged watersheds at the Hubbard Brook Experimental Forest, some of which have been subjected to experimental manipulations. The calculation of fluxes is currently supervised by John Campbell (US Forest Service). The long-term stream water record is collected and maintained by the US Forest Service. The collection and management of the long-term stream and precipitation chemistry record was initiated in 1963 by Gene E. Likens, F. Herbert Bormann, Robert S. Pierce, and Noye M. Johnson. HBWatER is currently sustained by Tammy Wooster (Cary IES) and Jeff Merriam (USFS) and the dataset is curated and maintained by a team of researchers: Chris Solomon (Cary IES), Emma Rosi (Cary IES), Emily Bernhardt (Duke), Lindsey Rustad (USFS), John Campbell (USFS), Bill McDowell (UNH), Charley Driscoll (Syracuse U.), Mark Green (Case Western), and Scott Bailey (USFS). Current Financial Support for HBWatER is provided by NSF LTREB # 1907683 and the USDA Forest Service Northern Research Station. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the US Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: Chemistry of Streamwater – Monthly Fluxes, Watershed 5, 1963 - ongoing
These data are monthly fluxes of solutes in stream water measured in watersheds of the Hubbard Brook Experimental Forest and are a part of the Hubbard Brook Watershed Ecosystem Record (HBWatER), which is a long-term record of stream and precipitation chemistry and volume. The solute fluxes in stream water are calculated as the product of the volume of stream water and solute concentrations. There are nine gaged watersheds at the Hubbard Brook Experimental Forest, some of which have been subjected to experimental manipulations. The calculation of fluxes is currently supervised by John Campbell (US Forest Service). The long-term stream water record is collected and maintained by the US Forest Service. The collection and management of the long-term stream and precipitation chemistry record was initiated in 1963 by Gene E. Likens, F. Herbert Bormann, Robert S. Pierce, and Noye M. Johnson. HBWatER is currently sustained by Tammy Wooster (Cary IES) and Jeff Merriam (USFS) and the dataset is curated and maintained by a team of researchers: Chris Solomon (Cary IES), Emma Rosi (Cary IES), Emily Bernhardt (Duke), Lindsey Rustad (USFS), John Campbell (USFS), Bill McDowell (UNH), Charley Driscoll (Syracuse U.), Mark Green (Case Western), and Scott Bailey (USFS). Current Financial Support for HBWatER is provided by NSF LTREB # 1907683 and the USDA Forest Service Northern Research Station. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the US Forest Service, Northern Research Station.
Dissolved inorganic nutrients including 5 macro nutrients: silicate, phosphate, nitrate, nitrite, and ammonium from water column bottle samples collected between October and April at Palmer Station, 1991 - 2025.
The inorganic plant macronutrients dissolved phosphate, silicate, nitrate, nitrite and ammonium are the major sources of nutrition for phytoplankton growth in seawater (with sunlight and inorganic carbon). Macronutrient distributions reflect the large-scale circulation patterns in the oceans and are useful properties to delineate water masses. Dissolved inorganic nutrients samples are typically collected in every Niskin bottle sample collected at and near Palmer Station, Anvers Island, Antarctica on the Western Antarctic Peninsula. Water samples are collected throughout the water column at stations within the Palmer LTER region (primarily B and E, to 50m and 65m respectively). Beginning in the 2020-2021 season, Station B is no longer sampled. In Antarctic waters, dissolved inorganic macronutrients are seldom depleted to limiting concentrations except during heavy prolonged phytoplankton blooms. This is due to the fact that phytoplankton growth is more often limited by light or iron, and to the short growing season. Water samples are analyzed for dissolved nutrients with recognized standard oceanographic protocols for nutrient autoanalyzers (continuous flow analyzers).
Dissolved inorganic nutrients including 5 macro nutrients: silicate, phosphate, nitrate, nitrite, and ammonium from water column bottle samples collected during annual cruise along western Antarctic Peninsula, 1991 - 2024.
The inorganic plant macronutrients dissolved phosphate, silicate, nitrate, nitrite and ammonium are the major sources of nutrition for phytoplankton growth in seawater (with sunlight and inorganic carbon). Macronutrient distributions reflect the large-scale circulation patterns in the oceans and are useful properties to delineate water masses. Dissolved inorganic nutrients samples are typically collected in every CTD/Rosette cast performed on the annual LTER cruises along the western Antarctic Peninsula. In Antarctic waters, dissolved inorganic macronutrients are seldom depleted to limiting concentrations except during heavy prolonged phytoplankton blooms. This is due to the fact that phytoplankton growth is more often limited by light or iron, and to the short growing season. Water samples pre-filtered through 47mm GF/F filters upon collection and samples frozen until analysis. Water samples are analyzed for dissolved nutrients with recognized standard oceanographic protocols for nutrient autoanalyzers (continuous flow analyzers).
PIE LTER 5-minute marsh water table height at Nelson Island, Rowley, MA from May-November 2020.
Measurements of water table height in the Nelson Island marsh located near the Nelson Island eddy flux tower, Rowley, MA. Measurements were taken every 5 minutes at each logger along a transect of water level loggers running perpendicular to the Nelson stream bank at Nelson Island from May-November 2020.
PIE LTER 5-minute marsh water table height at Nelson Island, Rowley, MA from April-October 2021.
Measurements of water table height in the Nelson Island marsh located near the Nelson Island eddy flux tower, Rowley, MA. Measurements were taken every 5 minutes at each logger along a transect of water level loggers running perpendicular to the Nelson stream bank at Nelson Island from April-October 2021.
SBC LTER: Time series of quarterly NetCDF files of kelp biomass in the canopy from Landsat 5, 7 and 8, since 1984 (ongoing)
This data file represents a time series of canopy area of giant kelp, Macrocystis pyrifera, and bull kelp, Nereocystis luetkeana, and canopy biomass of giant kelp derived from Landsat 5 Thematic Mapper (TM), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 8 Operational Land Imager (OLI), and Landsat 9 Operational Land Imager 2 satellite imagery, along with relevant metadata. The kelp canopy is composed of the portions of fronds and stipes floating on the surface of the water. Canopy area (m) data are given for individual 30 x 30 meter pixels for all coastal areas of Baja California, Mexico, California, Oregon, and the outer coast of Washington (including offshore islands). Biomass data (wet weight, kg) are given for individual 30 x 30 meter pixels in the coastal areas extending from near Ano Nuevo, CA through the southern range limit in Baja California (including offshore islands), representing the range where giant kelp is the dominant canopy forming species. Data were derived from the three Landsat sensors listed above. Observations are made on a 16 day repeat cycle, for each instrument, but the temporal coverage is irregular because of cloud cover, instrument failure, and the mission length of each sensor (TM: 1984 – 2011, ETM+: 1999 – present, OLI: 2013 – present). Estimates of canopy area are derived from the fractional cover of kelp canopy determined from satellite surface reflectance. Estimates of kelp canopy biomass are derived from the relationship between giant kelp fractional cover determined from satellite surface reflectance and empirical measurements of giant kelp canopy biomass in long-term SBC LTER study plots obtained using SCUBA. The different Landsat sensors were calibrated to each other using simulated Landsat data derived from hyperspectral imagery. Missing data due to the ETM+ scan line corrector error were filled using a synchrony-based gap filling method. Data are organized into a single NetCDF file and contain the quarterly area and
Dataset of "Elucidation of factors shaping reactivity of 5'-deoxyadenosyl – a prominent organic radical in biology"
<p>This study investigates the factors modulating the reactivity of 5'-deoxyadenosyl (5'dAdo•) radical, a potent hydrogen atom abstractor, present in the active sites of radical SAM enzymes, but otherwise undergoing a rapid self-decay in aqueous solution. Here, we compare hydrogen atom abstraction (HAA) reactions between native substrates of radical SAM enzymes and 5'dAdo• in aqueous solution and in two enzymatic microenvironments and reveal that HAA efficiency of 5'dAdo• depends on (i) formation of 5'dAdo• in a pre-ordered complex with a substrate, which attenuates the unfavorable effect of substrate:5'dAdo• complex formation, (ii) hindering the conformational change associated with self-decay by performing the reaction in a tight cavity. The enzymatic cavity, however, does not have a strong effect on the HAA activity of 5'dAdo•. We performed an analysis of HAA performed by 5'dAdo• based on the three-component thermodynamic model incorporating the diagonal effect of the free energy of reaction, and the off-diagonal effect of asynchronicity and frustration. The study is based on the straightforward relationship between the off-diagonal thermodynamic effects and the electronic-structure descriptor – the redistribution of charge between the reactants during the reaction. It allows to access HAA-competent redox and acidobasic properties of 5'dAdo• that are otherwise unavailable due to its instability upon one-electron reduction and protonation. The results show that all reactions feature a favourable thermodynamic driving force and tunneling, the latter of which lowers systematically barriers by ~2 kcal mol-1. In addition, most of the reaction experience a favourable off-diagonal thermodynamic contribution. In HAA reactions, 5'dAdo• acts as a weak oxidant as well as a base, also 5'dAdo•-promoted HAA reactions proceed with quite low degree of asynchronicity of proton and electron transfer. Finally, the study elucidates the crucial and dual role of asynchronicity. It directly lowers the barrier as a part of the off-diagonal thermodynamic contribution, but also indirectly increases the non-thermodynamic part of the barrier by controlling the adiabatic coupling between proton and electron transfer. The latter signals that the reaction proceeds as a hydrogen atom transfer rather than a proton-coupled electron transfer.</p>
Dataset of "Asparagine-Modified Magnetic Graphene Oxide: An Efficient and Green Nanocatalyst for Synthesis of 5-oxodihydropyrano[3,2-c]chromenes and dihydropyrano[2,3- c]pyrazole derivatives and the Density functional theory calculation".
<p>The primary focus of this study involved the fabrication of a novel nanocatalyst Fe3O4-supported asparagine functionalized graphene oxide (Fe3O4@GO-N-(Asparagine)). The catalyst was synthesized through a four-step procedure.</p>
CoHERE Work Package 5 Survey of free time activities amongst Latvian schoolchildren
<p>The quantitative survey «Youth and leisure time activities, informal education and cultural heritage» was carried out as part of Work Package 5 (Education, heritage and identities) of 'Critical Heritages: Performing and presenting identities in Europe' (https://research.ncl.ac.uk/cohere/researchstrands/). This Work Package develops best practices in the production and transmission of European heritages and identities within two sectors that face challenges in an age of immigration and globalization, namely education and cultural heritage production. It explores how European identity is shaped through formal and informal learning situations both in and outside the classroom with the purpose of enhancing school curricula and informal learning at heritage sites by integrating innovative technologies and including multicultural perspectives.</p> <p>The target group: youth (age 16 to 19) from secondary schools and professional education schools in Latvia </p> <p>Sample size: 1047. Time period: December 2017 – March 2018.</p> <p>Method: a self-administered questionnaire.</p> <p>The aim of the survey is to examine how cultural heritage shape different identities in Europe, representing ideas of place, history, traditions and sense of belonging.</p> <p>Tasks of the survey:<br> 1) to get information about leisure time activities of the youth and their participation in different informal education activities;<br> 2) to examine youth opinion about the role of cultural heritage and their involvement in safeguarding cultural heritage;<br> 3) to analyse the role of cultural heritage in formation of local, national and European identities of the young people.</p>
Decomposition and lignin content of wooden dowels deployed in a saltmarsh for 3, 5, or 7 years at Goat Island, North Inlet, Georgetown SC, 2017-2024.
Wooden dowels were used to examine organic matter decomposition in saltmarsh soils. Dowels were inserted to a depth of 45cm in control and fertilized marsh plots. They were harvested after 3, 5 or 7 years and sectioned into 5-cm segments. Weight loss of the dowel segments was used to quantify the fate of labile organic matter, while change in lignin content was used to quantify the fate of refractory organic matter.
Survival, growth and biomass estimates of two dominant palmetto species of south-central Florida from 1981 - 2022, ongoing at 5-year intervals
This data package is comprised of three datasets all pertaining to two dominant palmetto species, Serenoa repens and Sabal etonia, at Archbold Biological Station in south-central Florida. The first dataset, palmetto_data, contains survival and growth data across multiple years, habitats and experimental treatments. The second dataset, seedlings_data, follows the fate of marked putative palmetto seedlings in the field to assess survivorship and growth. The final dataset, harvested_palmetto_data, contains size data and estimated dry mass (biomass in grams) of 33 destructively harvested palmetto plants (17 S. repens and 16 S. etonia) of varying sizes and across habitats. Thirty-two of these were used to calculate estimated biomass, using regression equations, for palmettos sampled in the palmetto_data. Below we summarize experimental setup and data collected for each dataset. Palmetto data Demographic data were collected as three separate components. The first component compared growth among habitats. Starting in 1981, equal numbers of both palmetto species were marked across scrubby flatwoods (oak scrub) and flatwoods habitats (3 sites per habitat) for a total of 240 marked plants. These habitats had not burned within the last decade, but historically had experienced a natural fire return interval of 5 - 20 years prior to this studies initiation. The second component added an additional 400 palmettos (200 of each species), which were marked in sand pine scrub (n = 200) in 1985 and sandhill habitat (n = 200) in 1989 on Archbold's Red Hill. At the time of this project's initiation, all Red Hill management units were last burned in 1927 and were considered long unburned. Part of Archbold's management plan included restoring fire into some management units while leaving others long unburned to serve as reference units. Therefore, for our second component, we were able to create a 2x2 factorial design using habitat types on Red Hill and fire management as factors, with 100
Physical and chemical properties of soils on Watershed 5 of Hubbard Brook Experimental Forest, before and after whole-tree harvest
We sampled soils on watershed 5 at the Hubbard Brook Experimental Forest in 1983, prior to a whole-tree harvest conducted in the winter of 1983-84. We resampled in 1986, 1991, and 1998. All sampling was performed using a quantitative soil pit method. Samples of the combined Oi and Oe horizons; the Oa horizon; 0-10 cm, 10-20 cm, and >20 cm layers of mineral soil; and the C horizon were collected. Grab samples of pedogenic mineral horizons were also taken from the sides of a subset of pits in each year. Here we report soil chemistry, mass of soil, percent rock, bulk density, and organic matter. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: Watershed 5 Tree Inventory, 1982 - ongoing
A whole-tree harvest was conducted during the dormant season of 1983-1984 in order to assess ecosystem response to whole-tree logging operations. Pre-harvest forest inventory surveys were conducted in 1982 on the whole of the watershed. Post-harvest surveys were conducted in 1990, 1994 and every 5 years thereafter. This data set includes data for 1982 – 2019 surveys. The hydrology has been monitored since 1962 and stream water chemistry monitored since 1963. In 1982, before the clearcut, the watershed was forested by typical northern hardwood species (sugar maple, beech and yellow birch) on the lower 85 % of its area and by a montane boreal transition forest of red spruce, balsam fir and white birch on the highest 15%. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
5-meter elevation contours, Martinelli Snowfield, Niwot Ridge LTER, Colorado
Martinelli snow field contour lines. This dataset is part of the Martinelli grid geographic information system (GIS). Additional information concerning the Niwot Ridge LTER hierarchical GIS can be found in Walker et al. (1993).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.