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ShareScore release 0.9.0
Dataset results
696 results for “Affymetrix”
Affymetrix Normalization Required Files in GIANT tool suite
<p>This archive contains affymetrix files necessary to normalize microarrays data and modified annotations files required in GIANT APT-Normalize tool for annotation of normalized data.</p>
Determining haploblocks and haplotypes in the MAGIC winter wheat population WM-800 based on the wheat 15k Infinium and the 135k Affymetrix SNP arrays
<p><span>Haplotypes are derived from single nucleotide polymorphisms (SNPs). They are beneficial (i) to remove redundant sequence information in genetic populations and, more important, (ii) to distinguish more than two variants/alleles at a genomic locus. A haploblock locus, made of multiple haplotypes, is very useful in multiparent-advanced-generation-intercross (MAGIC) populations, where, ideally, multiple founder alleles need to be distinguished at each locus to subsequently carry out efficient genome-wide association analysis studies (GWAS). </span></p> <p><span>In this regard, the dataset contains genotype matrices (made of SNP, haploblock and haplotype data) for 800 lines of the MAGIC WHEAT population WM-800 (Sannemann et al. 2018). The datasets are based on genotyping the lines with both the already published wheat 15k Infinium SNP array (Sannemann et al. 2018) and the new wheat 135k Affymetrix SNP array.</span></p>
Determining haploblocks and haplotypes in the MAGIC winter wheat population WM-800 based on the wheat 15k Infinium and the 135k Affymetrix SNP arrays
Open the record for dataset details and reuse information.
Affymetrix SNP array data for analysis of peanut agronomic traits
GEO Series GSE197103. Arachis hypogaea. 333 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Affymetrix Gene Expression array data for Tcl1 mouse model samples
GEO Series GSE118345. Mus musculus. 8 samples. Type: Expression profiling by array.
Affymetrix SNP array data for acute lymphoblastic leukemia samples
GEO Series GSE42056. Homo sapiens. 40 samples. Type: Genome variation profiling by SNP array.
Affymetrix SNP array data for Non-Smoking Female Lung Cancer in Taiwan
GEO Series GSE33355. Homo sapiens. 122 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Multi-influential interactions controls behaviour and cognition through a limited number of pathways in Down syndrome mouse models (Affymetrix reanalysis)
GEO Series GSE149466. Homo sapiens. 0 samples. Type: Expression profiling by array; Third-party reanalysis.
Generation and Characterization of an immortalized human mesenchymal stromal cell line model [Affymetrix]
GEO Series GSE47646. Homo sapiens. 1 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Affymetrix SNP Array data for familial coarctation of the aorta (CoA) I
GEO Series GSE67929. Homo sapiens. 70 samples. Type: Genome variation profiling by SNP array.
Next-generation sequencing of cancers of unknown primary (Affymetrix GenomeWideSNP data)
GEO Series GSE49602. Homo sapiens. 7 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Affymetrix SNP array data for squamous cell carcinoma of base of tongue and healthy individuals samples
GEO Series GSE46812. Homo sapiens. 98 samples. Type: SNP genotyping by SNP array.
Affymetrix GeneChip Mouse Gene 1.0 arrays of RNA extracted from gastrocnemius muscle of 4 global Ppp3cb KO mice and 4 corresponding WT littermates, and 4 skeletal muscle-specific Ppp3r1Mlc1fCre KO an
GEO Series GSE71174. Mus musculus. 16 samples. Type: Expression profiling by array.
Microenvironment Cell Populations Affymetrix HuGene 1.0ST
GEO Series GSE86357. Homo sapiens. 0 samples. Type: Expression profiling by array; Third-party reanalysis.
Oncoscan™ Affymetrix array for pure LCIS, LCIS associated with ILC (invLCIS) and ILC
GEO Series GSE88909. Homo sapiens. 85 samples. Type: Genome variation profiling by SNP array.
Affymetrix SNP array data for chicken samples
GEO Series GSE127968. Gallus gallus. 1193 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Microenvironment Cell Populations Affymetrix 133 A
GEO Series GSE86363. Homo sapiens. 0 samples. Type: Expression profiling by array; Third-party reanalysis.
Intergrated analysis of array-miRNAs and matched Affymetrix gene
GEO Series GSE44021. Homo sapiens. 226 samples. Type: Expression profiling by array.
Affymetrix SNP Array data for familial coarctation of the aorta (CoA) II
GEO Series GSE67930. Homo sapiens. 13 samples. Type: Genome variation profiling by SNP array.
Affymetrix SNP 6.0 data for individuals with Trisomy 21 or Down syndrome
GEO Series GSE60607. Homo sapiens. 437 samples. Type: Genome variation profiling by SNP array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.