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22 results for “African penguin”

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zenodo40/100

Fig. 4 in Mosquito identification and haemosporidian parasites detection in the enclosure of the African penguins (Spheniscus demersus) at the SANBI zoological garden

Fig. 4. Maximum likelihood tree showing the clustering of Leucocytozoon sp. (Clade I) and Plasmodium sp. (Clade II) with Haemoproteus sp. as outgroup. Sequences from this study are highlighted with red circles. (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)

opencc-by-4.0Dec 2020View details →
zenodo40/100

Fig. 3. Maximum likelihood tree for Culex species showing the 5 clades representing 5 subgroups. Clade I in Mosquito identification and haemosporidian parasites detection in the enclosure of the African penguins (Spheniscus demersus) at the SANBI zoological garden

Fig. 3. Maximum likelihood tree for Culex species showing the 5 clades representing 5 subgroups. Clade I is the Trifilatus Subgroup (Mattingly and Rageau, 1958) for Cx. torrentium; Clade II and III are the Pipiens Complex; Clade IV the Theileri Subgroup (Sirivanakarn, 1976) for Cx. theileri; and Clade V is the Tarsalis (Edwards, 1932) for Cx. declaratory and Apicinus Subgroups (Edwards, 1932) for Cx. mollis. Lutzia sp. used as outgroups. Sequences from this study are indicated by asterisks (*).

opencc-by-4.0Dec 2020View details →
zenodo40/100

Fig. 1 in Mosquito identification and haemosporidian parasites detection in the enclosure of the African penguins (Spheniscus demersus) at the SANBI zoological garden

Fig. 1. Map of South Africa showing the National Zoological Gardens (NZG). The red star indicates where the African penguin enclosure is located and where mosquito samples were collected (Labuschagne et al., 2008). (For interpretation of the references to color in this figure legend, the reader is referred to the Web version of this article.)

opencc-by-4.0Dec 2020View details →
zenodo40/100

Fig. 6 in Plasmodium relictum MSP-1 capture antigen-based ELISA for detection of avian malaria antibodies in African penguins (Spheniscus demersus)

Fig. 6. Analysis of the sensitivity and specificity of the P. relictum MSP-1 capture antigen-based ELISA. Serial dilutions of normal chicken serum and three sera samples from P. relictum-infected penguins (8776, 8783 and 8784) were used for coating the assay wells. Each dilution was performed in triplicate, and the data shown represent means of three independent experiments with standard error bars and levels of statistical significance (****: P <0.0001).

opencc-by-4.0Dec 2022View details →
zenodo40/100

Fig. 4 in Plasmodium relictum MSP-1 capture antigen-based ELISA for detection of avian malaria antibodies in African penguins (Spheniscus demersus)

Fig. 4. Validation of ELISA. The ELISA developed using P. relictum MSP-1 protein was tested with known P. relictum positive penguin serum collected from penguin # 8790 at week 26. Black column represents positive penguin serum. Hatched and white columns represent negative controls containing normal chicken serum and PBS, respectively. Grey column represents the positive reaction containing streptavidin alkaline-phosphatase and its substrate pnitrophenyl phosphate. Each reaction was performed in triplicate, and the data shown represent means of three independent experiments with standard error bars and levels of statistical significance (****: P <0.0001).

opencc-by-4.0Dec 2022View details →
zenodo40/100

Fig. 2 in Plasmodium relictum MSP-1 capture antigen-based ELISA for detection of avian malaria antibodies in African penguins (Spheniscus demersus)

Fig. 2. Verification of the biotinylation of recombinant P. relictum MSP-1. Purified recombinant P. relictum MSP-1 protein was labeled with biotin. Biotinylation of MSP-1 was confirmed using an enzyme (streptavidin alkaline phosphatase)-linking assay and absorbance read at 405 nm indicated the presence of biotinylated MSP-1. Black column represents biotinylated MSP-1 protein. Hatched column and white column represent negative controls containing non-biotinylated MSP-1 and PBS, respectively. Grey column represents the positive control containing streptavidin alkaline-phosphatase (SAP) and its substrate p-nitrophenyl phosphate (PNPP). Each reaction was performed in triplicate, and the data shown represent means of three independent experiments with standard error bars and levels of statistical significance (****: P <0.0001).

opencc-by-4.0Dec 2022View details →
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Fig. 3 in Plasmodium relictum MSP-1 capture antigen-based ELISA for detection of avian malaria antibodies in African penguins (Spheniscus demersus)

Fig. 3. Biotin-labeled MSP-1 protein titration curve. Serially diluted (300 ng/ μL to 0.003 ng/μL) biotinylated MSP-1 was used for coating the surfaces of the reaction wells overnight at 4 ◦C. The amount of biotinylated MSP-1 immobilized on the surface of the well was proportional to the intensity of the colored product generated which in turn was proportional to the absorbance value measured at 405 nm wavelength. Reactions were performed in triplicate, and the data shown represent means of three independent experiments with standard error bars.

opencc-by-4.0Dec 2022View details →
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Fig. 7. MSP-1 in Plasmodium relictum MSP-1 capture antigen-based ELISA for detection of avian malaria antibodies in African penguins (Spheniscus demersus)

Fig. 7. MSP-1 capture antigen-based ELISA analysis of 370 sera samples collected from 11 penguins during three consecutive seasons of Spring (March to May), Summer (June to August) and Fall (September to November). (A) ELISA absorbance readings for the 370 sera samples collected from Spring to Fall are arranged in ascending order. Time of collection is indicated by color. Light grey represents Spring, dark grey represents Summer, and black represents Fall. Black dashed line indicates the single cut-off point (0.488) determined by change-point analysis. (B) Left: percentage of positive (A405 ≥ 0.488) and negative (A405 <0.488) sera samples; Right: distribution of positive samples in Spring (March to May), Summer (June to August), and Fall (September to November). (C) Percentage of penguin sera samples that tested positive (A405> = 0.488) in each month from March to November.

opencc-by-4.0Dec 2022View details →
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Fig. 5. P. relictum MSP-1 in Plasmodium relictum MSP-1 capture antigen-based ELISA for detection of avian malaria antibodies in African penguins (Spheniscus demersus)

Fig. 5. P. relictum MSP-1 capture antigen-based ELISA analysis of test sera from penguins. Sera samples (370 total) from eleven penguins collected from Spring through Fall season were used as test samples in the assay to determine anti-P. relictum antibodies level. Light grey, dark grey, and black columns represent penguin sera samples collected in Spring, Summer, and Fall, respectively. Panel A–K represents ELISA results for individual penguins' sera collected at different time points from Spring to Fall. Panel L represents average ELISA absorbances for all 11 penguins at different sampling points. Each sample was assayed in triplicate, and the data shown represent means of three independent experiments with standard error bars.

opencc-by-4.0Dec 2022View details →
dryad36/100

Intercolony variation in reproductive skipping in the African penguin mark-recapture data

<p>In long-lived species, reproductive skipping is a common strategy whereby sexually mature animals skip a breeding season, potentially reducing population growth. This may be an adaptive decision to protect survival or a non-adaptive decision driven by individual-specific constraints. Understanding the presence and drivers of reproductive skipping behaviour can be important for effective population management, yet in many species such as the endangered African penguin (<em>Spheniscus demersus</em>), these factors remain unknown. This study uses multistate mark-recapture methods to estimate African penguin survival and breeding probabilities at two colonies between 2013 and 2020. Overall, survival (mean ± SE) was higher at Stony Point (0.82 ± 0.01) than Robben Island (0.77 ± 0.02). Inter-colony differences were linked to food availability; under decreasing sardine (<em>Sardinops sagax</em>) abundance, survival decreased at Robben Island and increased at Stony Point. Additionally, reproductive skipping was evident across both colonies; at Robben Island, the probability of a breeder becoming a nonbreeder was ~0.22, versus ~0.1 at Stony Point. Penguins skipping reproduction had a lower probability of future breeding than breeding individuals; this lack of adaptive benefit suggests reproductive skipping is driven by individual-specific constraints. Lower survival and breeding propensity at Robben Island places this colony in greater need of conservation action. However, further research on the drivers of inter-colony differences is needed.</p>

opencc-zeroAug 2022View details →
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Fig. 2 in Mosquito identification and haemosporidian parasites detection in the enclosure of the African penguins (Spheniscus demersus) at the SANBI zoological garden

Fig. 2. The single UV-light trap used to collect mosquito samples.

opencc-by-4.0Dec 2020View details →
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Intercolony variation in reproductive skipping in the African penguin mark-recapture data

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publicAug 2022View details →
dryad36/100

Data from: The conservation status and population decline of the African penguin deconstructed in space and time

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publicMar 2021View details →
zenodo32/100

Age-related differences in gut microbiome and fecal metabolome of captive African penguins (Spheniscus demersus)

<p><span>The code applied for the study: "Age-related differences in gut microbiome and fecal metabolome of captive African penguins (Spheniscus demersus)".</span></p>

opencc-by-4.0Nov 2024View details →
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Data from: Group foraging increases foraging efficiency in a piscivorous diver, the African penguin

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publicAug 2017View details →
dryad32/100

Decades of artificial nests towards African Penguin conservation – have they made a difference?

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publicSep 2024View details →
dryad28/100

Data from: Molecular genetics unveiled unknown family relationships and hybrids in an ex-situ colony of African penguins (Spheniscus demersus)

Genealogical relationships among colony members, inbreeding status, and presence of hybrids are crucial data that can assist zoo curators in captive colony management and decision-making on relocation for reproduction. This study employed molecular markers to study a large colony (n=56) of African Penguin hosted in an Italian biopark. A panel of 15 STRs (single tandem repeats) was selected, and genotype data were analyzed using COLONY software to determine parentage relationships and compare the existing studbook information to a pedigree built from genetic analyses. The existence of extra-pair mating and the presence of hybrids were investigated: discrepancies in kinship relationships emerged following molecular parentage analysis and ten unknown genetic relationships were revealed. Infidelity of one member of the pair was observed in six cases and extra-pair copulation was assessed by genetic analysis in two episodes. One member of the colony was found to be a hybrid (S. demersus X S. humboldti); his progeny, derived by extra-pair copulation, was traced. Three other hidden hybrids were discovered and assessed using the identified candidate private alleles. Overall, our results demonstrate that molecular methods to confirm parentage and analyze relatedness among colony members are a valuable tool to complement studbook-based genetic management of African penguin captive populations. Because a variety of behavioral dynamics (e.g., extra-pair mating) can make observations ineffective in some species and because molecular markers outperform studbook in identifying the presence of hybrids, reliance on studbook information alone is not recommended.

opencc-zeroDec 2017View details →
zenodo28/100

african penguin

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opencc-by-4.0Nov 2024View details →
dryad28/100

Data from: Molecular genetics unveiled unknown family relationships and hybrids in an ex-situ colony of African penguins (Spheniscus demersus)

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publicJul 2018View details →
zenodo16/100

Nonlinear vocal phenomena in the begging calls of the African penguin

<p>This repository hosts the dataset used in the analysis conducted for the article titled "Nonlinear Vocal Phenomena in the Begging Calls of the African Penguin," including all the necessary files to replicate the analysis and findings presented in the study.</p> <p>&nbsp;</p> <p><strong>Files information</strong></p> <ul> <li><strong>Dataset_full_model.csv = model 1</strong><br>The variable inside are: <br>file_ name= name of the file&nbsp;<br>seq= sequences' Identity<br>id = chicks' identity<br>status = healthy or sick<br>age = chicks age in day<br>nlp= presence/absence<br><br></li> <li><strong>Dataset_control_model.csv = model 2</strong><br>file_ name= name of the file&nbsp;<br>seq= sequences' Identity<br>id = chicks' identity<br>status = healthy or sick<br>age = chicks age in day<br>nlp= nlp presence/absence<br><br></li> <li><strong>Dataset_reduced_NLP_category.csv = model 3, model 4, model 5</strong><br>file_ name= name of the file&nbsp;<br>seq= sequences' Identity<br>id = chicks' identity<br>status = healthy or sick<br>age = chicks age in day<br>nlp_ch=nlp chaos presence/absence<br>nlp_sb=nlp sidebands presence/absence<br>multi = presence of subharmonics, frequency jump or both<br><br></li> <li><strong>Dataset_reduced_NLP_duration.csv = model 6</strong><br>file_ name= name of the file&nbsp;<br>seq= sequences' Identity<br>id = chicks' identity<br>status = healthy or sick<br>age = chicks age in day<br>freq= duration of the NLP normalised on the call duration</li> </ul> <p>&nbsp;</p>

restrictedcc-by-4.0May 2024View details →

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