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25 results for “African rain forest”
Data from: Phylogenomic approaches reveal how climate shapes patterns of genetic diversity in an African rain forest tree species
<p>The world's second largest expanse of tropical rain forest is in Central Africa and it harbours enormous species diversity. Population genetic studies have consistently revealed significant structure across central African rain forest plants, in particular a North-South genetic discontinuity around the equatorial line, in a continuous expanse of rain forest but where a climatic inversion is documented. Here, we took a phylogeographic approach by sequencing 351 nuclear markers in 112 individuals across the distribution of the African rain forest tree species Annickia affinis (Annonaceae). We showed for the first time that the North-South divide is the result of a single, major colonisation event across the climatic inversion from an ancestral population located in Gabon. We suggested that differences in ecological niche of populations located on either side of this inversion may have contributed to this phylogenetic discontinuity. We found evidence for inland dispersal, predominantly in northern areas, and variable demographic histories among genetic clusters, indicating that populations responded differently to past climate change. We show how newly-developed genomic tools can provide invaluable insights into our understanding of tropical rain forest evolutionary dynamics.</p>
Data from: Individualistic evolutionary responses of central African rain forest plants to Pleistocene climatic fluctuations
<p>Understanding the evolutionary dynamics of genetic diversity is fundamental for species conservation in the face of climate change, particularly in hyper-diverse biomes. Species in a region may respond similarly to climate change, leading to comparable evolutionary dynamics, or individualistically, resulting in dissimilar patterns. The second largest expanse of continuous tropical rain forest (TRF) in the world is found in Central Africa. Here, present-day patterns of genetic structure are thought to be dictated by repeated expansion and contraction of TRFs into and out of refugia during Pleistocene climatic fluctuations. This refugia model implies a common response to past climate change. However, given the unrivalled diversity of TRFs, species could respond differently because of distinct environmental requirements or ecological characteristics. To test this we generated genome-wide sequence data for >750 individuals of seven co-distributed plants from Lower Guinea in Central Africa. We inferred species' evolutionary and demographic histories within a comparative phylogeographic framework. Levels of genetic structure varied among species and emerged primarily during the Pleistocene, but divergence events were rarely concordant. Demographic trends ranged from repeated contraction and expansion to continuous growth. Furthermore, patterns in genetic variation were linked to disparate environmental factors including climate, soil and habitat stability. Using a strict refugia model to explain past TRF dynamics is too simplistic. Instead, individualistic evolutionary responses to Pleistocene climatic fluctuations have shaped patterns in genetic diversity. Predicting the future dynamics of TRFs under climate change will be challenging and more emphasis is needed on species ecology to better conserve TRFs worldwide.</p>
Data from: Limitation of seedling growth by potassium and magnesium supply for two ectomycorrhizal tree species of a Central African rain forest and its implication for their recruitment
In the ectomycorrhizal caesalpiniaceous groves of southern Korup National Park, the dominant tree species, Microberlinia bisulcata, displays very poor in situ recruitment compared with its codominant, Tetraberlinia bifoliolata. The reported ex situ experiment tested whether availabilities of soil potassium and magnesium play a role. Seedlings of the two species received applications of K and Mg fertilizer in potted native soil in a local shade house, and their responses in terms of growth and nutrient concentrations were recorded over 2 years. Amended soil concentrations were also determined. Microberlinia responded strongly and positively in its growth to Mg, but less to K; Tetraberlinia responded weakly to both. Added Mg led to strongly increased Mg concentration for Microberlinia while added K changed that concentration only slightly; Tetraberlinia strongly increased its concentration of K with added K, but only somewhat its Mg concentration with added Mg. Additions of Mg and K had small but important antagonistic effects. Microberlinia is Mg-demanding and apparently Mg-limited in Korup soil; Tetraberlinia, whilst K-demanding, appeared not to be K-limited (for growth). Added K enhanced plant P concentrations of both species. Extra applied Mg may also be alleviating soil aluminum toxicity, and hence improving growth indirectly and especially to the benefit of Microberlinia. Mg appears to be essential for Microberlinia seedling growth and its low soil availability in grove soils at Korup may be an important contributing factor to its poor recruitment. Microberlinia is highly shade-intolerant and strongly light-responding, whilst Tetraberlinia is more shade-tolerant and moderately light-responding, which affords an interesting contrast with respect to their differing responses to Mg supply. The study revealed novel aspects of functional traits and likely niche-partitioning among ectomycorrhizal caesalps in African rain forests. Identifying the direct and interacting indirect effects of essential elements on tropical tree seedling growth presents a considerable challenge due the complex nexus of causes involved.
Data from: Selective logging intensity in an East African rain forest predicts reductions in ant diversity
As natural forest ecosystems increasingly face pressure from deforestation, it is ever more important to understand the impacts of habitat fragmentation and degradation on biodiversity. Most studies of anthropogenic change in the tropics come from Southeast Asia and South America, and impacts of habitat modification are often taxon-specific. Here we empirically assessed the impact of habitat fragmentation and recent (within 25 years) and historic (>25 years ago) selective logging on the diversity of ants in the Kakamega rain forest in western Kenya, and asked whether these forms of degradation interact as multiple stressors. We found that the severity of recent selective logging was negatively related to overall species richness and abundance as well as the richness and abundance of forest specialists, but found no detrimental effect of past selective logging or habitat fragmentation on ant diversity, although habitat fragment size was correlated with estimated species richness. There was also no effect of any form of habitat degradation on the richness or abundance of open habitat specialists, even though these species often exploit niches created in disturbed environments. Ultimately, this study reveals the detrimental impact of even moderate forms of habitat degradation on insect biodiversity in the understudied African rain forests.
Data from: Seedling resistance, tolerance and escape from herbivores: insights from co-dominant canopy tree species in a resource-poor African rain forest
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Data from: Individualistic evolutionary responses of central African rain forest plants to Pleistocene climatic fluctuations
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Data from: History of the fragmentation of the African rain forest in the Dahomey Gap: insight from the demographic history of Terminalia superba
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Data from: Micronutrients may influence the efficacy of ectomycorrhizas to support tree seedlings in a lowland African rain forest
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Data from: Phylogenomic approaches reveal how climate shapes patterns of genetic diversity in an African rain forest tree species
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Data from: Selective logging intensity in an East African rain forest predicts reductions in ant diversity
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Data from: Limitation of seedling growth by potassium and magnesium supply for two ectomycorrhizal tree species of a Central African rain forest and its implication for their recruitment
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Data from: Transient dominance in a central African rain forest
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Figure 6 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 6 - Adults, males: A Euphaedra sarcoptera cyparissoides holotype (dorsum) B Euphaedra sarcoptera cyparissoides holotype (venter) C Euphaedra sarcoptera nipponicorum Mbandaka, Congo (dorsum) D Euphaedra sarcoptera nipponicorum Mbandaka, Congo (venter) E E. sarcoptera sarcoptera-styx cline, Mount Swa, Liberia (dorsum) F E. sarcoptera sarcoptera-styx cline, Mount Swa, Liberia (venter).
Figure 1 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 1 - Adults, males: A Euphaedra cyparissa cyparissa Mount Swa, Liberia (dorsum) B Euphaedra cyparissa cyparissa Mount Swa, Liberia (venter) C Euphaedra cyparissa nimbina Mont Nimba, Guinea, holotype (dorsum) D Euphaedra cyparissa nimbina Mont Nimba, Guinea, holotype (venter) E Euphaedra cyparissa tai Tai, Ivory Coast (dorsum) F Euphaedra cyparissa tai Tai, Ivory Coast (venter).
Figure 10 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 10 - Female genitalia (in lateral view): A Euphaedra cyparissa aurantina Mpasso, Ghana E cyparissa aurantina Abengourou, Ivory Coast; 1 ♂: S. Nigeria, Ewohimi, 29.XI.55, J. Boorman; 1 ♂: no label; 2 ♂: Cameroon, Ebogo, Mbalmayo, X.2001; 1 ♂: Cameroon C Euphaedra cyparissa nimbina Mont Nimba, Guinea D Euphaedra cyparissa tai Tai, Ivory Coast E Euphaedra cyparissa aurata Obudu, Nigeria F Euphaedra cyparissa nominalina Mongorimba, R.C.A.
Figure 12 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 12 - Female genitalia (in lateral view): A Euphaedra sarcoptera nipponicorum Kigoma, Tanzania B Euphaedra sarcoptera ferrea Mont Nimba, Guinea C Euphaedra sarcoptera nipponicorum Mbandaka, Congo.
Figure 5 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 5 - Adults, males: A Euphaedra sarcoptera sarcoptera male, Bibiani, Ghana (dorsum) B Euphaedra sarcoptera sarcoptera, Bibiani, Ghana (venter) C Euphaedra sarcoptera ferrea Mont Nimba, Guinea, holotype (dorsum) D Euphaedra sarcoptera ferrea Mont Nimba, Guinea, holotype (venter) E Euphaedra sarcoptera styx, Tai, Ivory Coast (dosum) F Euphaedra sarcoptera styx, Tai, Ivory Coast (venter).
Figure 9 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 9 - Male genitalia (in lateral view, aedeagus extracted): A Euphaedra cyparissa cyparissa Guma, Sierra Leone B Euphaedra cyparissa tai Tai, Ivory Coast C Euphaedra cyparissa nimbina Mont Nimba, Guinea D Euphaedra cyparissa aurantina Abengourou, Ivory Coast E Euphaedra cyparissa aurata Ebogo, Cameroon F Euphaedra cyparissa nominalina Bangui, Central African Republic.
Figure 11 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 11 - Male genitalia (in lateral view, aedeagus extracted): A Euphaedra sarcoptera sarcoptera Bibiani, Ghana B Euphaedra sarcoptera nipponicorum Mbandaka, Congo C Euphaedra sarcoptera styx Tai, Ivory Coast D Euphaedra sarcoptera nipponicorum Mbandaka, Congo E Euphaedra sarcoptera ferrea Mont Nimba, Guinea F Euphaedra sarcoptera nipponicorum Mbandaka, Congo.
Figure 4 from: Pyrcz T, Warren-Gash H, Lorenc-Brudecka J, Knoop D, Oremans P, Sáfián S (2013) Taxonomy and distribution pattern of the African rain forest butterfly genus Euphaedra Hübner sensu stricto with the description of three new subspecies of Euphaedra cyparissa (Cramer) and one of E. sarcoptera (Butler) (Lepidoptera, Nymphalidae, Limenitidinae, Adoliadini). ZooKeys 298: 1-37. https://doi.org/10.3897/zookeys.298.4894
Figure 4 - Adults, females: A Euphaedra cyparissa tai Tai, Ivory Coast (venter) B Euphaedra cyparissa tai Tai, Ivory Coast (venter) C Euphaedra cyparissa aurata Isheri, Nigeria (dorsum) D Euphaedra cyparissa aurata Isheri, Nigeria (venter) E Euphaedra cyparissa nominalina Borgen Dolphin Platform, paratype (dorsum) F Euphaedra cyparissa nominalina Borgen Dolphin Platform, paratype (venter).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.