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56 results for “Agricultural Research”
Research generated data supporting the article manuscript "Setting Grounds for Data Literacy in the Sector of Agriculture: Learning About and with Open Data"
<p>In the research 345 MS courses and 216 MS courses data from the ECTS catalogue (2019) of University of Zagreb Faculty of Agriculture were mapped onto the data literacy competence areas (theme) and DL competence areas sub-themes adapted ODI Data Skills Framework (2020) expanding the term “skill” to “competence” to include knowledge and attitudes. Teaching staff was interviewed in semi-structured interviews on the data literacy competences covered in their courses and open data use and teaching in their courses as well as their perceived importance for the sector of the course.</p> <p>The upload consists of the following .csv files:</p> <table> <tbody> <tr> <td>readme_DL_OD_Salamonetal.csv</td> </tr> <tr> <td>01DL_OD_Salamonetal.csv</td> </tr> <tr> <td>02DL_OD_Salamonetal.csv</td> </tr> <tr> <td>03DL_OD_Salamonetal.csv</td> </tr> <tr> <td>04DL_OD_Salamonetal.csv</td> </tr> <tr> <td>05DL_OD_Salamonetal.csv</td> </tr> <tr> <td>06DL_OD_Salamonetal.csv</td> </tr> <tr> <td>07DL_OD_Salamonetal.csv</td> </tr> </tbody> </table> <p> </p> <p> </p> <p> </p>
Data and code from: Unoccupied aerial systems adoption in agricultural research
<div> </div> <p>This repository contains data and code supporting the findings of the study on the adoption of Unoccupied Aerial Systems (UAS) in agricultural research as reported by Lachowiec et al (2024) in The Plant Phenome Journal.</p> <p>We collected data through an online survey as well as through in person interviews.</p> <div> <h2>Description of Repository Contents</h2> </div> <div> <h3>Data</h3> </div> <p>Data are in the <code>/data</code> directory:</p> <ul> <li><code>Ag_Drones_Codebook_14Jun2023.pdf</code>: Codebook providing detailed descriptions of survey questions and coding schemes. This contains detailed descriptions of the content of the two CSV files listed below.</li> <li><code>Results_Ag_Drones_2021_Survey.csv</code>: This is raw survey data collected from agricultural researchers regarding their use of UAS technology.</li> <li><code>countries_code.csv</code>: Country codes used in the survey data for respondent location.</li> <li><code>interviews/</code>: A directory containing interview transcripts and summary provided as both Microsoft Word and plain text (Markdown) formats, specifically: <ul> <li>Notes from nine one on one interviews named <code><interviewee last name>)UAS_Interview.[md|docx]</code></li> <li>A summary document, <code>Feldman_AG2PI_InterviewSummary_2022-08-10.docx</code>.</li> </ul> </li> </ul> <div> <h3>Code</h3> </div> <p>Code used to process data and generate the manuscript's analysis and figures.</p> <ul> <li><code>data_code.R</code>: R Script for preprocessing and cleaning the survey data.</li> <li><code>dataAnalysis.R</code>: R script for statistical analysis and visualization of survey results.</li> </ul> <div> <h2>Citing this work</h2> </div> <p>This repository contains data and code to support the manuscript:</p> <blockquote> <p>Lachowiec, J., Feldman, M.J., Matias, F.I., LeBauer, D., Gregory, A. (2024). Unoccupied aerial systems adoption in agricultural research. Zenodo. The Plant Phenome Journal Volume(Issue), pages 00. doi:DOI</p> </blockquote> <p>If you use the data or code from this repository, please also cite:</p> <blockquote> <p>Lachowiec, J., Feldman, M.J., Matias, F.I., LeBauer, D., Gregory, A. (2024). Data and code from: Unoccupied aerial systems adoption in agricultural research. Zenodo. doi:10.5281/zenodo.10573428</p> </blockquote> <p>And consider contributing cleaned data and code to this repository.</p> <div> <h2>Acknowlegements and Support</h2> </div> <p><strong>Acknowledgments</strong></p> <p>We thank all survey respondents for their participation. We acknowledge the Montana State University HELPS lab for aiding in the development and implementation of the survey.</p> <p><strong>Funding</strong></p> <p>This research was supported by the intramural research program of the U.S. Department of Agriculture, National Institute of Food and Agriculture, Agricultural Genome to Phenome Initiative (2020-70412-32615 and 2021-70412-35233). The findings and conclusions in this preliminary presentation have not been formally disseminated by the U. S. Department of Agriculture and should not be construed to represent any agency determination or policy.</p>
Figure 4 in Agricultural Research Service Weed Science Research: Past, Present, and Future
Figure 4. Agricultural Research Service researchers have focused on understanding how climate change influences weeds/invasive plants and their impacts and management. Image shows a study of how precipitation change influences cheatgrass (Bromus tectorum) invasion in rangelands of northeast Wyoming, USA. (Credit: Anna Kuhne)
Figure 5. A in Agricultural Research Service Weed Science Research: Past, Present, and Future
Figure 5. A conceptual framework providing context for addressing challenges for managing weeds in agroecosystems and natural areas.
Figure 3. Sorgoleone has a in Agricultural Research Service Weed Science Research: Past, Present, and Future
Figure 3. Sorgoleone has a potential as a plant-incorporated protectant herbicide. The highly bioactive benzoquinone allelochemical sorgoleone is produced exclusively within root hair cells of members of the genus Sorghum. Genes of the entire sorgoleone pathway are being used to transform crops to produce sorgoloeone (Pan et al. 2021).
Figure 2 in Agricultural Research Service Weed Science Research: Past, Present, and Future
Figure 2. (A) Depiction of a bipartite synthetic Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) cassette (red) consisting of a Cas9 endonuclease and a guide ribonucleic acid RNA (gRNA) that is flanked by homology arms (HA) (black). (B) Following expression of the CRISPR cassette, gRNA binds to Cas9 and directs the complex to a unique sequence-specific site for DNA cleavage and homology-directed repair (HDR). Following HDR, the CRISPR cassette is copied into both genomic regions. (C) Standard Mendelian inheritance results in 50% of progeny inheriting a modified gene. In contrast, a gene drive would bias inheritance, theoretically resulting in all progenies (~99%) inheriting the modified gene, thereby "driving" the modified gene into an invasive weed population.
Figure 1 in Agricultural Research Service Weed Science Research: Past, Present, and Future
Figure 1. (A) BenchBot autonomous high-throughput imaging system, (B) example imagery from BenchBot after automated segmentation of weeds from background objects, (C) testing of the handheld version of the Weeds3D system at the Beltsville Agricultural Research Center, and (D) example 3D reconstruction of plant biomass from the Weeds3D systems.
Soil microbiome dataset from the University of Wisconsin Arlington and Lancaster agricultural research stations and cheese maker and vegetable processor wastewater land application sites
<p>Cheese making and vegetable processing are trillion-dollar industries globally. However, they generate immense volumes of high nitrogen wastewater that must be processed safely and cost effectively. Land application systems are frequently used by rural medium and smaller processing facilities that lack ready access to wastewater resource recovery facilities. This study utilized soil microbial data to determine system differences leading to high denitrification rates observed in incubation studies in agricultural soil collected from University of Wisconsin Agricultural Research Stations (ARS), Arlington and Lancaster stations, compared to industry cheese making and vegetable processing land application water treatment facilities. It was hypothesized that decade long frequent treatment with facility wastewater would alter the microbial communities in the system soils, but this is not the case. No clear correlations were found between soil denitrification rates and biotic or abiotic system factors and the microbial communities observed in the industry systems are similar to the ARS soils under agricultural production and to literature reported denitrifying systems such as wetlands and wastewater resource recovery facilities. Knowing that land application system management does not alter the microbial biome will allow any management advances that increase denitrification efficiency in other denitrifying systems to be readily applied to industry wastewater land application facilities. </p>
Supplemental networks of cowords of the paper Measuring the impact of Big Data in the scientific research in Agriculture and allied fields
<p>Supplemental networks of cowords of the paper Measuring the impact of Big Data in the scientific research in Agriculture and allied fields.</p>
Soil microbiome dataset from the University of Wisconsin Arlington and Lancaster agricultural research stations and cheese maker and vegetable processor wastewater land application sites
Open the record for dataset details and reuse information.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of county area in units of squareKilometers on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains county area measurements in squareKilometers units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of number of farms in units of number on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains number of farms measurements in number units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of farmland acres (total) in units of acre on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains farmland acres (total) measurements in acre units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of population employed in commerce (percent of total) in units of percent on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains population employed in commerce (percent of total) measurements in percent units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of population employed at farms (percent of total) in units of percent on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains population employed at farms (percent of total) measurements in percent units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of population employed in manufacturing (percent of total) in units of percent on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains population employed in manufacturing (percent of total) measurements in percent units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of population employed in service (percent of total) in units of percent on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains population employed in service (percent of total) measurements in percent units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of percent urban population in units of percent on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains percent urban population measurements in percent units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of human population density in units of numberPerKilometerSquared on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains human population density measurements in numberPerKilometerSquared units and were aggregated to a yearly timescale.
Eastern Oregon Agricultural Research Center site, station Harney County, OR (FIPS 41025), study of human population (total) in units of number on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Eastern Oregon Agricultural Research Center (EOA) contains human population (total) measurements in number units and were aggregated to a yearly timescale.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.