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901 results for “Amazon basin”
Monthly SPEI dataset at 3-, 6-, and 12-month time scales in the Amazon River Basin
<p>SPEI datasets derived from the Global SPEI database webpage and developed by Vicente-Serrano et al. (2010). This product is disseminated by the Spanish National Research Council (CSIC) for the period from January 1901 to December 2018 (118 years, version 2.6). The SPEI datasets at 3-, 6-, and 12-month time scales are gridded over a 0.50-degree grid on the Amazon River Basin. A total of 1416 GeoTIFF files in Geographic Tagged Image File Format (GeoTIFF) format, one per month, are provided.</p>
Maps of the Sustainable Development Goal (SDG) indicator 15.3.1 with its sub-indicators for the entire Amazon River Basin
<p>Maps of the SDG indicator 15.3.1 adopted by the United Nations Convention to Combat Desertification (UNCCD) together with its sub-indicators for the Amazon River Basin for the period 2001-2020. The sub-indicators are trajectory (or trend), state, and performance. The SDG indicator 15.3.1 was calculated using the procedures described in the second version of the Good Practice Guidance for SDG Indicator 15.3.1. The annual LCLU maps from the MapBiomas project at 30 m spatial resolution and the 16-day MOD13Q1 NDVI and SoilGrids dataset were used as inputs. In addition, annualized maps of drought severity derived from SPI12, SPEI12, and scPDSI are added. </p> <p>A total of seven GeoTIFF files in Geographic Tagged Image File Format (GeoTIFF) format are provided at 250 m spatial resolution.</p> <p>Coding for the SDG indicator 15.3.1, trajectory, state, and performance.</p> <p>-32768 is ‘No data’</p> <p>-1 is ‘Degraded’</p> <p>0 is ‘Stable’’</p> <p>1 is ‘Improvement’</p> <p>Coding for the drought severity.</p> <p>From 0 (minimum drought severity) to 1 (maximum drought severity).</p>
Data used for doi.org/10.1029/2012JD018338 : Baars et al, 2012: Aerosol profiling with lidar in the Amazon Basin during the wet and dry season
<p><span>This is the data whoch ahs been used for the publication:</span></p> <p><span><span>Baars, H.</span></span><span>, <span>A. Ansmann</span>, <span>D. Althausen</span>, <span>R. Engelmann</span>, <span>B. Heese</span>, <span>D. Müller</span>, <span>P. Artaxo</span>, <span>M. Paixao</span>, <span>T. Pauliquevis</span>, and <span>R. Souza</span> (<span>2012</span>), <span>Aerosol profiling with lidar in the Amazon Basin during the wet and dry season</span>, <em>J. Geophys. Res.</em>, <span>117</span>, D21201, doi:<a title="Link to external resource: 10.1029/2012JD018338" href="https://doi.org/10.1029/2012JD018338" target="_blank" rel="noopener">10.1029/2012JD018338</a>.</span></p> <p><span>For each of the Figures in the Publication the underlaying data is provided in a respective folder.</span></p> <p><span>The raw data (i.e,. the analyzed lidar data for several case during the one-year campaign in 2008) is provided separately.</span></p> <p><span>As the time of data creation is more than 10 years ago, the data description does not comply to current standards. Thus, in case of any questions, please contact the first author.</span></p> <p> </p> <p> </p> <p> </p>
Annotation of metagenome-assembled genomes retrieved from Amazon river basin metagenomes
<p> </p> <p><strong>Annotation of metagenome-assembled genomes retrieved from Amazon river basin metagenomes</strong></p> <p> </p> <p> RELEASE MAG-2018/01<br> --------------------------------------</p> <p> </p> <p>1. INTRODUCTION</p> <p>Here is deposited the genes and proteins annotation from metagenome-assembled genomes (MAGs) retrieved from Amazon river basin metaganomes (SRP044326, PRJEB25171 and SRP039390) were deposited under European Nucleotide Archive - ENA project PRJEB25176. Briefly, metagenomes were coassembled in groups by geographical location with Megahit v.1.0 and the contigs were used to a reads mapping and binning with BWA-MEM (version 0.7.12-r1039), SamTools (version 1.3.1) and Metabat (v2.12.1). MAGs with overall quality greater than 50, calculated with CheckM (version 1.0.11), were selected for refining precedures. Contigs outliers were eliminated by using RefineM (version 0.0.23). Finished MAGs were then annotated by Prokka (version 1.11) pipeline, and with the other most completes databases up to date (KEGG, UniProtKB, dbCAN, PFAM, eggNOG and COG).</p> <p> </p> <p>2. LOCATION</p> <p> </p> <p> MAGs sequences are available under ENA project PRJEB25176.</p> <p> </p> <p> ENA_accession Isolate<br> -------------------- --------------<br> ERZ494218 AM_0118<br> ERZ494219 AM_0219<br> ERZ494220 AM_0226<br> ERZ494221 AM_0228<br> ERZ494222 AM_0233<br> ERZ494223 AM_0240<br> ERZ494224 AM_0244<br> ERZ494225 AM_0256<br> ERZ494226 AM_0268<br> ERZ494227 AM_0275<br> ERZ494228 AM_0466<br> ERZ494229 AM_0507<br> ERZ494230 AM_0510<br> ERZ494231 AM_0519<br> ERZ494232 AM_0528<br> ERZ494233 AM_0546<br> ERZ494234 AM_0608<br> ERZ494235 AM_0615<br> ERZ494236 AM_0616<br> ERZ494237 AM_0619<br> ERZ494238 AM_0621<br> ERZ494239 AM_0630<br> ERZ494240 AM_0643<br> ERZ494241 AM_0729<br> ERZ494242 AM_0764<br> ERZ494243 AM_0832<br> ERZ494244 AM_0849<br> ERZ494245 AM_0854<br> ERZ494246 AM_0876<br> ERZ494247 AM_0902<br> ERZ494248 AM_0936<br> ERZ494249 AM_1003<br> ERZ494250 AM_1104<br> ERZ494251 AM_1111<br> ERZ494252 AM_1205<br> ERZ494253 AM_1312<br> ERZ494254 AM_1409<br> ERZ494255 AM_1503<br> ERZ494256 AM_1603<br> ERZ494257 AM_1606<br> ERZ494258 AM_1801<br> ERZ494259 AM_1811<br> ERZ494260 AM_2104<br> ERZ494261 AM_2116<br> ERZ494262 AM_2124<br> ERZ494263 AM_2202<br> ERZ494264 AM_2207<br> ERZ494265 AM_2208<br> ERZ494266 AM_2324<br> ERZ494267 AM_2502<br> ERZ494268 AM_2804<br> </p> <p>3. ACKNOWLEDGEMENTS<br> </p> <p>This work is a joint effort of Laboratory of molecular biology from Federal<br> University of São Carlos, São Paulo, Brazil (LBM/UFSCAR) and Protists group<br> of Institut del Ciencias del Mar, Barcelone, Spain (ICM). We are grateful to<br> Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), as well as, the spanish funding organ Consejo Superior de Investigaciones Científicas (CSIC).</p> <p>This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) - Finance Code 001.</p> <p> </p> <p>4. CONTACT INFORMATION</p> <p> Current curators:</p> <p> - Célio Dias Santos Júnior (celio.diasjunior@gmail.com)<br> - Flavio Henrique-Silva (dfhs@ufscar.br)<br> - Ramiro R. Logares (ramiro.logares@icm.csic.es)<br> </p> <p>5. COPYRIGHT NOTICE</p> <p> Amazon River Basin Metagenome-Assembled Genomes Annotation - AM/MAGs<br> Copyright (C) 2018 The AMnrGC consortium.</p> <p> This database is provided “as is” and without any warranty of any kind,<br> of openly available. You can redistribute and/or modify it<br> as you wish, under the terms of Creative Commons CC BY 4.0:</p> <p> https://creativecommons.org/licenses/by/4.0/</p> <p>___________________<br> Barcelone, Feb/2018</p>
Figures 1–13 in New records and diagnostic notes on large carpenter bees (Hymenoptera: Apidae: genus Xylocopa Latreille), from the Amazon River basin of South America
Figures 1–13. Dorsal habitus photographs of pinned, preserved specimens of females of Xylocopa (Neoxylocopa) species from the Amazon River basin, from the USNM collection. 1) X. (N.) aeneipennis. 2) X. (N.) amazonica. 3) X. (N.) aurulenta. 4) X. (N.) carbonaria. 5) X. (N.) cearensis. 6) X. (N.) fimbriata. 7) X. (N.) frontalis. 8) X. (N.) grisescens. 9) X. (N.) hirsutissima. 10) X. (N.) orthogonaspis. 11) X. (N.) similis. 12) X. (N.) suspecta. 13) X. (N.) tegulata.
Fig. 2 in Integrative taxonomy reveals two new cryptic species of Hyphessobrycon Durbin, 1908 (Teleostei: Characidae) from the Maracaçumé and middle Tocantins River basins, Eastern Amazon region
Fig. 2. Hyphessobrycon frickei Guimarães, Brito, Bragança, Katz & Ottoni sp. nov. (CICCAA 02388), 17.7 mm SL; jaw suspensory. A. Premaxillary. B. Maxilla. C. Dentary. Scale bar: 1 mm
Fig. 8 in Integrative taxonomy reveals two new cryptic species of Hyphessobrycon Durbin, 1908 (Teleostei: Characidae) from the Maracaçumé and middle Tocantins River basins, Eastern Amazon region
Fig. 8. Topology of the ultrametric tree performed in BEAST ver. 1.8.4 including unique haplotypes summarizing the results of GMYC, bPTP and ABGD. Numbers above and below branches are posterior probability values. The star indicates the Hyphessobrycon copelandi clade.
Bioclimatic data for species distribution modelling in the Amazon Basin
<p>In this dataset, bioclimatic data regarding the Amazon Basin, in the near of the cities of Manaus and Manacapuru are available. There are 11 environmental data variables, referring to temperature, atmospheric pressure, concentration of pollutants and aerosols, such as carbon monoxide, ozone, carbon dioxide, among others. These were collected by the G-159 Gulfstream aircraft during its two periods of operation (IOP1 and IOP2), available in the GOAmazon (Green Ocean Amazon) project's data repository. A spatial interpolation methodology (linear barycentric interpolation) was applied to each variable, in order to obtain a larger area of data. The species occurrence data were collected from the repositories of the ICMBio (Instituto Chico Mendes de Conservação da Biodiversidade) Portal da Biodiversidade and GBIF (Global Biodiversity Information Facility), referring to the same date and location of the environmental data. <br> </p>
FIGURE 5. Aphyolebias boticarioi, UFRJ 5987 in Moema apurinan sp. n. and Aphyolebias boticarioi sp. n. (Teleostei: Cyprinodontiformes: Rivulidae): two new annual killifishes from the Rio Purus basin, Brazilian Amazon
FIGURE 5. Aphyolebias boticarioi, UFRJ 5987, female, paratype, 32.4 mm SL (one day after collection; pectoral, caudal and anal fins damaged); Brazil: Acre: Porto do Acre: Rio Purus basin.
FIGURE 4. Aphyolebias boticarioi, UFRJ 5986 in Moema apurinan sp. n. and Aphyolebias boticarioi sp. n. (Teleostei: Cyprinodontiformes: Rivulidae): two new annual killifishes from the Rio Purus basin, Brazilian Amazon
FIGURE 4. Aphyolebias boticarioi, UFRJ 5986, male, holotype, 42.1 mm SL (one day after collection; caudal and anal fins damaged); Brazil: Acre: Porto do Acre: Rio Purus basin.
FIGURE 2. Moema apurinan, UFRJ 5981 in Moema apurinan sp. n. and Aphyolebias boticarioi sp. n. (Teleostei: Cyprinodontiformes: Rivulidae): two new annual killifishes from the Rio Purus basin, Brazilian Amazon
FIGURE 2. Moema apurinan, UFRJ 5981, female, paratype, 44.4 mm SL (one day after collection); Brazil: Acre: Porto do Acre: Rio Purus basin.
FIGURE 1. Moema apurinan, UFRJ 5980 in Moema apurinan sp. n. and Aphyolebias boticarioi sp. n. (Teleostei: Cyprinodontiformes: Rivulidae): two new annual killifishes from the Rio Purus basin, Brazilian Amazon
FIGURE 1. Moema apurinan, UFRJ 5980, male, holotype, 52.5 mm SL (one day after collection); Brazil: Acre: Porto do Acre: Rio Purus basin.
FIGURE 4 in A new genus of longhorned caddisfly from the Amazon basin (Trichoptera: Leptoceridae: Grumichellini)
FIGURE 4. Amazonatolica hamadae, new species. Male genitalia: A—lateral; B—inferior appendage, ventral; C—segments IX & X, dorsal; D—phallus, lateral; E—apex of phallus, enlarged, lateral; F—apex of phallus, enlarged, ventral.
FIGURE 9 in A new genus of longhorned caddisfly from the Amazon basin (Trichoptera: Leptoceridae: Grumichellini)
FIGURE 9. Amazonatolica hamadae, new species. Pupa: A—abdomen, abdominal hook plates, enlarged; B—head, frontal, mandible enlarged; C—anterior silken membrane of pupal case.
FIGURE 2 in A taxonomic revision of the Musician Wren, Cyphorhinus arada (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin
FIGURE 2. Principal components analysis of morphometric characters of taxa of the Cyphorhinus arada complex, showing lack of mensural differentiation among these taxa.
FIGURE 4 in A taxonomic revision of the Musician Wren, Cyphorhinus arada (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin
FIGURE 4. Distribution of recognized species within the Cyphorhinus arada complex. Black symbols represents skins and white symbols represents tape recordings. Cyphorhinus arada: triangles; Cyphorhinus transfluvialis: pentagons; Cyphorhinus salvini: squares; Cyphorhinus modulator: circles; Cyphorhinus interpositus: inverted triangles; Cyphorhinus griseolateralis: diamonds. Stars represent the type locality of each species. Illustrations by Laura Montserrat and Michelle Konig.
FIGURE 3 in A taxonomic revision of the Musician Wren, Cyphorhinus arada (Aves, Troglodytidae), reveals the existence of six valid species endemic to the Amazon basin
FIGURE 3. Sonograms of songs typical of each recognized taxon. A and B: Cyphorhinus arada (XC 65012, XC 54717); C and D: Cyphorhinus transfluvialis (ML 113170, ML 113171); E and F: Cyphorhinus modulator (XC 39726, ML 126971); G and H: Cyphorhinus salvini (ML 28625, XC 72499); I and J: Cyphorhinus interpositus (USP 0 792, Kleber 2538); K and L: Cyphorhinus griseolateralis (XC 39960, ML 117074).
Fig. 2 in Karyotype differentiation and cytotaxonomic considerations in species of Serrasalmidae (Characiformes) from the Amazon basin
Fig. 2. Partial karyotypes of Serrasalmidae species showing Ag-NORs (left side) and 18S rDNA sites (right side): a-b) Serrasalmus elongatus; c-d) Serrasalmus maculatus; e-f) Serrasalmus cf. rhombeus; g-h) Serrasalmus rhombeus; i-j) Pygocentrus nattereri; k-l) Colossoma macropomum. Numbers indicate the corresponding chromosome pairs in the karyotypes of the species.
FIGURE 3 in Redescription of Moenkhausia melogramma (Characiformes: Characidae), a poorly known tetra from the western Amazon basin
FIGURE 3 | Moenkhausia melogramma, immediately before preservation. A. ZUEC 15479, female, 37.6 mm SL, Brazil, Amazonas, Atalaia do Norte, rio Javari, igarapé do Adolfo. Photo: G. N. Salvador. B. ZUEC 13213, female, 41.5 mm SL, Brazil, Acre, Cruzeiro do Sul, igarapé Paleral, affluent of rio Moa. Photo: T. C. Pessali.
FIGURE 2 in Redescription of Moenkhausia melogramma (Characiformes: Characidae), a poorly known tetra from the western Amazon basin
FIGURE 2 | Moenkhausia melogramma. A. ZUEC 14912, female, 39.9 mm SL, Brazil, Amazonas, Tabatinga, rio Solimões basin. B. ZUEC 15479, female, 38.1 mm SL, Brazil, Amazonas, Atalaia do Norte, rio Javari. C. MZUSP 122033, male, 33.2 mm SL, Brazil, Amazonas, Manicoré, rio Madeira basin. D. ZUEC 11327, female, 30.2 mm SL, Ecuador, Sucumbíos, río Gueppi, río Putumayo basin. E. MUSM 30440, male, 34.0 mm SL, Peru, Loreto, Maynas, Iquitos, quebrada San Lucas. F. MZUSP 106697, female, 43.2 mm SL, Peru, Madre de Dios, Mazuko, río Planchón.
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International Brain Laboratory public data
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OpenNeuro
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