Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
42
datasets available to search
ShareScore release 0.9.0
Dataset results
42 results for “Amblyomma”
Predicted genes from the Amblyomma americanum draft genome assembly
<p>Data for pub "Predicted genes from the <em>Amblyomma americanum </em>draft genome assembly."</p> <ul> <li>Amblyomma_americanum_filtered_assembly.fasta: Decontaminated A. americanum genome with bacterial contigs removed</li> <li>Amblyomma_americanum_bacterial_contigs_info.tsv: Information about contigs classified as bacteria that were removed</li> <li>Amblyomma_americanum_annotation_data.tar.gz: Directory of annotation data produced by EvidenceModeler as part of the nf-core/genomeannotator workflow. Includes files in FASTA format (predicted genes and proteins), set of proteins clustered at 99% identity in FASTA format, and annotations in both GFF3 and GTF formats. GTF file produced from the GFF3 file with AGAT.</li> <li>Amblyomma_americanum_transcriptome_assembly_data.tar.gz: Directory of data generated for the transcriptome assembly that was used for gene prediction</li> </ul>
Figure 1 in Is Geckobiella stamii (Acari: Pterygosomatidae) a hyperparasite or phoretic on Amblyomma dissimile (Acari: Ixodidae) associated with Iguana iguana from Panama?
Figure 1 Map of the locations where Geckobiella stamii was found associated withAmblyomma dissimile. 1: Corozal, Panama province; 2: Bugaba, Chiriquí province; 3: Tonosí, Los Santos province.
Figure 2 in An instance of Boiga dendrophila dendrophila (Boie, 1827) (Reptilia: Colubridae) being parasitized by Amblyomma helvolum Koch, 1844 (Acari: Ixodidae), with comments about the attachment sites of this tick species
Figure 2 An Amblyomma sp. nymph attached under a lateral mid-body scale of theBoiga dendrophila dendrophila(Photo by Jean-Jay Mao).
Figure 1 in An instance of Boiga dendrophila dendrophila (Boie, 1827) (Reptilia: Colubridae) being parasitized by Amblyomma helvolum Koch, 1844 (Acari: Ixodidae), with comments about the attachment sites of this tick species
Figure 1 Two Amblyomma helvolum females attached to the neck of theBoiga dendrophila dendrophila(Photo by Jean-Jay Mao).
Figure 3. Amblyomma scutatum A in Amblyomma scutatum Neumann, 1899 (Ixodida: Ixodidae) parasitizing Ctenosaura similis (Gray, 1831) (Squamata: Iguanidae) in Costa Rica
Figure 3. Amblyomma scutatum A. Dorsal view, female, B. Ventral view, female. C. Dorsal view, male, D. Ventral view, male.
Figure 2 in Amblyomma scutatum Neumann, 1899 (Ixodida: Ixodidae) parasitizing Ctenosaura similis (Gray, 1831) (Squamata: Iguanidae) in Costa Rica
Figure 2. Ctenosaura similis parasitized by Amblyomma scutatum. A. Group of ticks at the ventral base of the tail, B. Partially and fully engorged females on the left side of the neck.
Figure 1 in Amblyomma scutatum Neumann, 1899 (Ixodida: Ixodidae) parasitizing Ctenosaura similis (Gray, 1831) (Squamata: Iguanidae) in Costa Rica
Figure 1. Distribution of Amblyomma scutatum in Costa Rica. Past collection sites in descending order: Santa Rosa, Hacienda la Norma, Liberia, Parque Nacional Palo Verde, Bebedero, Monteverde, Puntarenas, Curú, Jacó, Quepos (red circles), and current collection site: Diriá (white triangle).
Figura 1 in Amblyomma tigrinum (Acari: Ixodidae) parasitando al gato montés Leopardus geoffroyi (Carnivora: Felidae) en la provincia de San Juan, Argentina
Figura 1. Ejemplar de Leopardus geoffroyi, detalle de la garrapata Amblyomma tigrinum en la región dorsal de la cabeza.
Fig. 2 in Occurrence of Amblyomma mixtum on the water buffalo (Bubalus bubalis) in Mexico
Fig. 2. Morphological characters used for Amblyomma mixtum identification: Dorsal view A) Female, B) Male; Zoom of the notum of the female C) and the scutum of the male D); Dorsal view of the capitulum of the female E) and male F); Ventral view of the female G); Dentition of the hypostome H).
Figura 2. a in Amblyomma mixtum Koch (Acari: Ixodidae) en ambientes peridomésticos de la Región Otomí-Tepehua, Hidalgo, México
Figura 2. a) Pápulas con escoriaciones, b) Garrapata macho A. mixtum, c) Garrapata hembra A. mixtum.
Fig. 1 in Isolation of Metarhizium guizhouense and Metarhizium robertsii strains from soil-exposed Amblyomma americanum (Acarina: Ixodidae) from northwest Arkansas, USA
Fig. 1. Metarhizium robertsii (A-C, E) and Metarhizium guizhouense (D, F) from Amblyomma americanum ticks collected from northwest Arkansas (Washington County). (A) Sporulating M. robertsii (Savoy P2AM1/ARSEF 14332) growing on an infected adult male tick. (B) Inset of infected tick showing sporulating conidia in addition to mouthparts and coxal spurs diagnostic of A. americanum. (C, D) Metarhizium robertsii (Savoy P2AM1/ARSEF 14432) and M. guizhouense (West Fork P9N2/ ARSEF 14330), respectively, 10 d old colony on Sabouraud Dextrose Agar (plate diam = 60 mm). (E, F) Conidia of M. robertsii (Savoy P2AM1/ARSEF 14332) and M. guizhouense (West Fork P9N2/ARSEF 14330), respectively, viewed at 200× magnification (scale = 20 µm). Photos: Austin Goldsmith (A, B) and Louela Castrillo (C-F).
Fig. 1 in Molecular screening of ticks of the genus Amblyomma (Acari: Ixodidae) infesting South African reptiles with comments on their potential to act as vectors for Hepatozoon fitzsimonsi (Dias, 1953) (Adeleorina: Hepatozoidae)
Fig. 1. Maximum likelihood analysis of Amblyomma tick species based on the 16S rRNA sequences. Bootstrap values at the major nodes are of percentage agreement among 1000 replicates. The branch scale represents substitutions per site.
Fig. 2 in Molecular screening of ticks of the genus Amblyomma (Acari: Ixodidae) infesting South African reptiles with comments on their potential to act as vectors for Hepatozoon fitzsimonsi (Dias, 1953) (Adeleorina: Hepatozoidae)
Fig. 2. Maximum likelihood analysis of species of Hepatozoon based on the 18S rRNA sequences. Bootstrap values at the major nodes are of percentage agreement among 1000 replicates. The branch scale represents substitutions per site.
Fig. 5 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 5. Phylogenetic tree based on the 16S rRNA (A) and gltA (B) of pathogens found in ticks from confiscated pangolins. Analyses were conducted by using MEGA software version 6.0 with the Maximum Likelihood algorithm. Bootstrap values were calculated with 1000 replicates. The number on each branch indicates bootstrap values. Red triangles: sequences of Ehrlichia spp. obtained in this study. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 1 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 1. Morphologic identification of ticks on the surface of confiscated Malayan pangolins. Tick on Malayan pangolin surface (A). Dorsa view, ventral view and typical feature details of male (B) and female (C) Amblyomma javanense ticks collected from confiscated Malayan pangolins. Black bar, 2 mm.
Fig. 4 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 4. The histopathological examination of Malayan pangolins tissue slide using hematoxylin-eosin (HE) staining. A: Heart, myocardial cells were necrotic, and the myoplasm at the necrosis was dissolved into vacuoles, some of which were lipid droplet vacuoles. B: Liver, sinus hepaticus was dilatate with blood stasis. C: Spleen, splenic cord widened and lymphocytes multiplied. D: Lung, alveoli collapse, inflammatory cell infiltration and capillaries congestion. E: Kidney, the renal tubules were transparent, with capillaries congested and cystic spaces dilated in the glomeruli. F: Lymph nodes, medullary blood vessels were dilated and congested, and there were many macrophages in the medullary cord. G: Salivary glands, epithelial cells of mucosa necrosis and submucosa congestion. H: Bladder, mucosa folds inward when empty. A-E, 400 X; F–H, 200X.
Fig. 3 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 3. Gross pathological lesions of dead Malayan pangolins after autopsy. A: Pale, even purple, superficial mucosa around the nose and mouth. B: Congestion and hemorrhage observed in the lung. C: Myocardial edema, pericardium effusion and ventricular congestion in the heart. D: Kidney congestion. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
Fig. 2 in Identification of Amblyomma javanense and detection of tick-borne Ehrlichia spp. in confiscated Malayan Pangolins
Fig. 2. Phylogenetic tree based on the 16S rRNA (A) and ITS2 (B) of ticks from confiscated Malayan pangolins. Analyses were conducted using MEGA 6.0 with the Maximum Likelihood algorithm. Bootstrap values were calculated with 1000 replicates. The number on each branch indicates bootstrap value. Red triangles and red lines: sequences of ticks obtained in this study. (For interpretation of the references to colour in this figure legend, the reader is referred to the Web version of this article.)
De novo assembly of a long-read Amblyomma americanum genome
<p>Genome assemblies of Amblyomma americanum generated from PacBio HiFi sequencing of 50 individual female ticks. This repository contains the unphased diploid assembly generated by the Flye assembler (Arcadia_Amblyomma_americanum_asm001.fasta). In addition, there are two associated fasta files containing sequences generated by submitting the unphased diploid assembly to separation by the Purge_Dups pipeline (purged pseudo-haploid assembly and haplotig assembly).</p> <p>Flye assembler: https://github.com/fenderglass/Flye</p> <p>Purge_Dups pipeline: https://github.com/dfguan/purge_dups</p> <p>NCBI Bioproject: PRJNA932813</p>
De novo assembly of a long-read Amblyomma americanum genome (NCBI/Genbank deposited genome)
<p>Genome assembly of Amblyomma americanum generated from PacBio HiFi sequencing of 50 individual female ticks. This repository contains the phased pseudo-haploid tick genome generated after assembly using Flye, phasing using Purge_Dups, and clean-up using custom python scripts generated in-house. </p> <p>NCBI Bioproject: PRJNA932813</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.