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7 results for “Ant1”
FASTA file containing to the MYB encoding gene Ant1 genomic sequences corresponding to wild and cultivated tomato accessions
<p>Fasta sequence correspond to the MYB encoding gene <em>An2-like</em>. The genomic sequences correspond to <em>Solanum galagpagnese</em> accession LA1141 (this study), <em>S. lycopersicum</em> variety OH8245 (this study), <em>S. lycopersicum</em> variety Heinz 1706 reference genome, and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at <a href="https://solgenomics.net/tools/blast/">https://solgenomics.net/tools/blast/</a>).</p>
FASTA file containing the MYB encoding gene An2-like and Ant1 coding sequences corresponding to wild and cultivated tomato accessions
<p>The coding sequence (CDS) of the MYB encoding genes <em>Ant1</em> and <em>An2-like</em>. Sequences were retrieved from regions corresponding to the<em> Aft</em> locus from <em>Solanum galapagense </em>accession LA1141, <em>S. lycopersicum</em> variety OH8245, and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences were compared to available CDS available from the Sol genomics network (SGN) and the National Center for Biotechnology Information. The CDS was retrieved from <em>S. lycopersicum</em> variety Indigo Rose [MN433087 (Yan et al., 2020)], <em>S. lycopersicum</em> accession LA1996 [MN242011.1, EF433417.1( Sapir et al., 2008; Colanero et al., 2020)], and <em>S. chilense </em>accession LA1930 [MN242012.1 (Colanero et al., 2020)], The orthologous CDS corresponding to the <em>Aft </em>MYB encoding genes from <em>Solanum tuberosum</em> L. Group Phureja clone DM1-3 genome (PGSC DM v4.03 Pseudomolecules) was retrieved from the Potato Genome Sequence Consortium (PGSC: Potato Genome Sequencing Consortium et al., 2011), and the Capsicum annum cv. CM334 genome was retrieved from <em>Capsicum annuum </em>cv CM334 genome chromosome release 1.55 (Hulse-Kemp et al. 2018). These CDS were obtained using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/). Comparison of syntenic chromosomal regions using known positions of tomato, potato, and pepper markers with comparative map viewer from SGN: (available at https://solgenomics.net/cview) on chromosome 10, was used as a quality check for S.<em> tuberosom</em> and <em>C. annuum.</em> Orthologous CDS corresponding to <em>Salvia miltiorrhiza, Arabidopsis thaliana</em>, [NM_105308.2, NM_105310.4 (Teng et al., 2005, Cominelli et al., 2008; Beradini et al., 2015)] were chosen based on tomato <em>Aft</em> sequence homology and gene annotations of positive R2R3 MYB regulation of anthocyanin. The CDS corresponding to the <em>Aft</em> genes were retrieved from the CDS reference genomes available from the Sol Genomics Network SGN: Tomato Genome CDS (ITAG release 4.0), Potato PGSC DM v3.4 CDS sequences, <em>Capsicum annuum </em>cv CM334 Genome CDS (release 1.55), or from the National Center for Biotechnology Information (NCBI: https://www.ncbi.nlm.nih.gov) reference sequences (RefSeq) section of the Genbank records. When accessed from Genank records, the CDS sequence was extracted from the “features” section and exported as a FASTA file.</p>
Partial restoration of the mitochondrial dysfunction by AAV-Ant1 (Slc25a4) transduction protects against dilated cardiomyopathy in Slc25a4-/- plus mtDNA mutant mice
GEO Series GSE280991. Mus musculus. 115 samples. Type: Expression profiling by high throughput sequencing.
Partial phenotypic rescue of the Sesb1 mitochondrial ANT1 disease model in Drosophila
GEO Series GSE55187. Drosophila melanogaster. 14 samples. Type: Expression profiling by array.
Adenine Nucleotide translocase 1 (ANT1) Deficiency Impairs Macrophage Metabolism and Migration, Protecting Against Emphysema in COPD [6 months]
GEO Series GSE289559. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Role of ANT1 in pulmonary fibrosis
GEO Series GSE244305. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Adenine Nucleotide translocase 1 (ANT1) Deficiency Impairs Macrophage Metabolism and Migration, Protecting Against Emphysema in COPD
GEO Series GSE287944. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.