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10 results for “Armillaria”
Data from: Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes
During the last years, simple sequence repeats (SSRs, also known as microsatellites) and single-nucleotide polymorphisms (SNPs) have become the most popular molecular markers for describing neutral genetic variation in populations of a wide range of organisms. However, only a limited number of studies has focused on comparing the performance of these two types of markers for describing the underlying genetic structure of wild populations. Moreover, none of these studies targeted fungi, the group of organisms with one of the most complex reproductive strategies. We evaluated the utility of SSRs and SNPs for inferring the neutral genetic structure of Armillaria cepistipes (basidiomycetes) at different spatial scales. For that, 407 samples were collected across a small (150 km2) area in the Ukrainian Carpathians and a large (41 000 km2) area in the Swiss Alps. All isolates were analyzed at 17 SSR loci distributed throughout the whole genome and at 24 SNP loci located in different single-copy conserved genes. The two markers showed different patterns of structure within the two spatial scales studied. The multi-allelic SSR markers seemed to be best suited for detecting genetic structure in indigenous fungal populations at a rather small spatial scale (radius of ~50-100 km). The pattern observed at SNP markers rather reflected ancient divergence of distant (~1000 km) populations that in addition are separated by mountain ranges. Despite these differences, both marker types were suitable for detecting the weak genetic structure of the two A. cepistipes populations investigated.
Data from: Comparative assessment of SSR and SNP markers for inferring the population genetic structure of the common fungus Armillaria cepistipes
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Lineage-specific genetic innovations streamline the genomes of Armillaria species to pathogenesis
GEO Series GSE100213. Armillaria ostoyae. 30 samples. Type: Expression profiling by high throughput sequencing.
Hallmarks of basidiomycete soft- and white-rot in wood-decay -omics data of Armillaria
GEO Series GSE149732. Armillaria ostoyae; Armillaria cepistipes. 25 samples. Type: Expression profiling by high throughput sequencing.
Hallmarks of basidiomycete soft- and white-rot in wood-decay -omics data of Armillaria [ARCE]
GEO Series GSE149725. Armillaria cepistipes. 14 samples. Type: Expression profiling by high throughput sequencing.
Transcriptomics reveals the mycoparasitic strategy of the mushroom Entoloma abortivum on species of the mushroom Armillaria
GEO Series GSE183699. Armillaria mellea; Entoloma abortivum. 27 samples. Type: Expression profiling by high throughput sequencing.
Hallmarks of basidiomycete soft- and white-rot in wood-decay -omics data of Armillaria [AROC18]
GEO Series GSE149701. Armillaria ostoyae. 11 samples. Type: Expression profiling by high throughput sequencing.
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
GEO Series GSE235457. Armillaria borealis; Armillaria ostoyae. 24 samples. Type: Expression profiling by high throughput sequencing.
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
GEO Series GSE235454. Armillaria borealis. 12 samples. Type: Expression profiling by high throughput sequencing.
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
GEO Series GSE235456. Armillaria ostoyae. 12 samples. Type: Expression profiling by high throughput sequencing.
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OpenNeuro
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