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Data for Decomposing Fomes fomentarius fruiting bodies, unlike fresh ones, represent a bacteria-rich habitat primarily driven by Arthropoda
<p>These files represent the data files necessary to run the R script analysis for the paper "Decomposing<i> Fomes fomentarius</i> fruiting bodies, unlike fresh ones, represent a bacteria-rich habitat primarily driven by Arthropoda."</p><p>A link to the paper and code will be provided once the paper has been published.</p>
Springtails (Arthropoda, Collembola) from Greater Puerto Rico: species list and distribution
The data archive is here: https://doi.org/10.2737/RDS-2018-0063 please use this DOI when citing this dataset. The Collembola fauna of Puerto Rico is reasonably well known, but many recent reports are scattered in published literature and unpublished theses. Here we present a summary of all springtail species identified from the Bank of Puerto Rico since 1927 and 2011. This includes new, previously unpublished records. In the present review we list 119 species in 59 genera and 17 families. Most species (37) belong in family Entomobryidae, but this reflects the taxonomic expertise of specialists working in Puerto Rico rather than a real bias in the distribution of higher taxa in the islands. In addition to the new reports, these data provide information on the distribution of the species outside the island bank. This current list of species is an update to original species lists from Puerto Rico (Mari Mutt 1982 and Thibaud 2014). In addition to the list of species, we make available a data set that includes a catalog of species, their habitats, historical reports and distribution maps on Greater Puerto Rico. \<para\> Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.\</para\>
Fig. 6 in Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida)
Fig. 6. Teratonotum stauromatum (Child, 1982) gen. et comb. nov. (MNHN-IU-2013-17964). A. Dorsal view. B. Propodus of third leg. C. Dorsal view of body. D. Ventral view of body. Abbreviations: ab = abdomen; ac = auxiliary claw; ch = chelifore; ct = chelifore tubercle on the anterior tip of the first scape; dt = dorsal tubercle; mc = main claw; ot = ocular tubercle; ov = oviger; pa = palp; pb = bulbous tubercle bearing the palp; pp = propodus; pr = proboscis; s = strigilis; t = tarsus. Scale bars: A = 0.5 mm; B = 0.1 mm; C–D = 0.2 mm.
Fig. 3 in Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida)
Fig. 3. Bayesian tree of Pycnogonida based on 179 sequences of the mitochondrial CO1 gene (partitioned analysis). Coloured rectangles show non-ammotheid families, and coloured branches discriminate ammotheid genera. The numbers at the nodes indicate posterior probabilities greater than 0.5. Symbols associated with each taxon name indicate the bias in base composition, as expressed by AT (circles) and CG (squares) skews (see main text for details): blue symbols represent a significant positive bias; red symbols indicate a significant negative bias; uncoloured symbols show insignificant values of skews. Asterisks after taxon names indicate holotype specimens. The arrow at the top of the tree shows the connection with Part 2 of the tree (see next page).
Appendix 2A in Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida)
Appendix 2A. Bayesian tree of Pycnogonida based on 135 CO1 sequences (un-partitioned analysis). Coloured rectangles show non-ammotheid families, and coloured branches discriminate ammotheid genera. The numbers at the nodes indicate the posterior probabilities superior to 0.5. Asterisks associated to taxon names indicate holotype specimens. Outgroups were removed for better readability.
Fig. 5 in Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida)
Fig. 5. Bayesian tree of Pycnogonida obtained from the concatenation of CO1 and 18S genes (135 taxa). Coloured rectangles show non- ammotheid families and coloured branches discriminate ammotheid genera. The numbers at the nodes indicate posterior probabilities greater than 0.5. Bold branches indicate CO1 (yellow), 18S (blue), or both (red) support in the independent analyses of CO1 and 18S genes provided in Appendix 1. Asterisks after taxon names indicate holotype specimens. Outgroups were removed for better readability.
Fig. 4 in Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida)
Fig. 4. Bayesian tree of Pycnogonida based on 159 sequences of the nuclear 18S rRNA gene. Coloured rectangles show non-ammotheid families and coloured branches discriminate ammotheid genera. The numbers at the nodes indicate posterior probabilities greater than 0.5. Asterisks after taxon names indicate holotype specimens. Outgroups were removed for better readability. The arrow at the top of the tree shows the connection with Part 2 of the tree (see next page).
Fig. 1 in Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida)
Fig. 1. Barcode richness in GenBank before and after this study. A–B. Number of CO1 haplotypes before (A) and after (B) this study as a function of the origins of the specimens sequenced. C. Number of species (grey) and genera (black) represented by a CO1 sequence found in GenBank databases before (left) and after (right) this study, classified by ecoregions. Littoral ecoregions defined according to Spalding et al. (2007) and abyssal ecoregions following a simplification of Bachraty et al. (2009).
Fig. 8. Cyclops lacustris G.O. Sars, 1863. A−B in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 8. Cyclops lacustris G.O. Sars, 1863. A−B. ♀. A. Leg 1, frontal (ZMO: lectotype designated herein). B. Leg 4, caudal – distal margin of the first and second exopodal segments bearing spinules on the frontal surface only (ZMO: Sars Coll. 12977 ♀-2). C−F. Ƌ. C. Anal somite and caudal rami, ventral (ZMO: Sars Coll. 12977 Ƌ-1). D. Urosomites 1̅4, ventral (ZMO: Sars Coll. 12977 Ƌ-1). E. Antennal coxobasis, caudal (ZMO: Sars Coll. 12976 Ƌ-1). F. Maxillulary palp (ZMO: Sars Coll. 12976 Ƌ-1). Scale bars = 100 µm.
Fig. 6 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 6. Cyclops bohater Koźmiński, 1933, copepodid IV, ♀. A−C. Antennule, ventral. A. Segments 1̅5 (I̅XVI), arrow points to long anterodistal seta of ancestral segment XIV. B. Segments 6̅8 (XVII̅ XXIV). C. Segments 9̅10 (XXV̅XXVIII). D. Leg 2, caudal. E. Leg 3, caudal. All drawings show specimen from Latvia (Lake Brigene ̅ MIZ 2/2016/1). Scale bar = 100 µm.
Fig. 5 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 5. Cyclops bohater Koźmiński, 1933, Ƌ. A. Maxillulary palp. B. Maxilliped syncoxopodite, frontal. C. Leg 1, frontal. D. Leg 2, slender spine of first exopodal segment and robust spines of exopodal segments 2 and 3. E. Exopodal armature of leg 3. F. Leg 4 coxopodite, basipodite and intercoxal sclerite, caudal. All drawings show a paralectotype (NHMUK 2016. 40). Scale bars = 100 µm.
Fig. 7. Cyclops lacustris G.O. Sars, 1863 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 7. Cyclops lacustris G.O. Sars, 1863, ♀. A. Habitus, dorsal (SMNK: 9567). B−C. Urosome, ventral (Lake Aspern, Norway ̅ MIZ 2/2016/20). B. Urosomites 1̅4. C. Anal somite and caudal rami. D. Antennular segments 12̅17, ventral (Lake Aspern, Norway ̅ MIZ 2/2016/20). E−F. Antennal coxobasis, caudal. E. ♀ from Lake Mjøsa, Norway (ZMO: Sars Coll. 12977 ♀-2). F. ♀ from Lake Aspern, Norway (MIZ 2/2016/20). G−H. Maxillulary palp. G. ♀ from Lake Mjøsa, Norway (ZMO: Sars Coll. 12977 ♀-2). H. ♀ from Lake Aspern, Norway (MIZ 2/2016/20). Scale bars: A̅H = 100 µm.
Fig. 3 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 3. Cyclops bohater Koźmiński, 1933, ♀. A. Maxilla, caudal. B. Maxilliped, frontal. C. Leg 1, frontal, arrows point to the long setules of the medial spine/seta of basipodite, and long spinules on the basipodite between the insertions of exopodite and endopodite. D−E. Leg 4: EXP, P4 exp 3; ENP, P4 enp3. All drawings show the lectotype (NHMUK 2016. 38). Scale bars: A̅E = 100 µm.
Fig. 2 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 2. Cyclops bohater Koźmiński, 1933, ♀. A−B. Surface ornamentation of antennal coxobasis. A. Frontal, arrow points to insertion site of long spinules missing in C. bohater. B. Caudal, arrow points to a group of spinules sometimes present. C. Labrum, epistoma and rostrum. D. Mandible, frontal, arrow points to insertion site of spinules missing in C. bohater. E. Maxillulary palp, arrows point to long setules of the setae, and spinulose ornamentation of the palp. All drawings show the lectotype (NHMUK 2016.38). Scale bars: A̅E = 100 µm.
Fig. 1 in Redescription and taxonomic notes on Cyclops bohater Koźmiński, 1933 and Cyclops lacustris G.O. Sars, 1863 (Arthropoda, Crustacea), with an identification key to the Cyclops species of Fenno-Scandinavia
Fig. 1. Cyclops bohater Koźmiński, 1933, ♀. A. Habitus, dorsal. B. Pediger 5 and genital doublesomite, ventral, arrow points to lateral "wing-like" protrusion of pediger 5. C. Anal somite and caudal rami, dorsal. D−G. Antennule, ventral. D. Segments 1̅6 (I̅XIV). E. Segments 7̅14 (XV-XXIII). F. Segments 12̅14 (XXI̅XXIII). G. Segments 15̅17 (XXIV̅XXVIII). Except for A (NHMUK 2016. 39) all drawings show the lectotype (NHMUK 2016. 38). Scale bars: A = 1 mm; B̅G = 100 µm.
Fig. 2 in Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian
Fig. 2. Lithological and biostratigraphical profiles of the Riachuelo Formation, Sergipe-Alagoas basin, northeastern Brazil, after Campos Neto et al. (2007) and Antonietto et al. (2015).
Fig. 1 in Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian
Fig. 1. Location of the Sergipe-Alagoas Basin in South America and Brazil, along with the outcrops and wells studied in the present work.
Fig. 10 in Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian
Fig. 10. Paleoenvironmental distributions of the ostracod species from the upper Aptian–Albian of the Riachuelo Formation, Sergipe-Alagoas Basin, northeastern Brazil.
Fig. 5 in Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian
Fig. 5. [facing page] Ostracods of the Riachuelo Formation, Sergipe-Alagoas Basin, Albian, Brazil. – A–C. Cytherella besrineensis (Bischoff, 1964) comb. nov. A. CP-669, right lateral view. B–C. CP-668. B. Left lateral view. C. Dorsal view. – D–F. Conchoecia? sp. 1. D, F. LBP 10. D. Right lateral view. F. Dorsal view. E. LBP 11, left lateral view. – G–I. Cytherelloidea btaterensis Bischoff, 1964. G. CP-671, right lateral view. H. CP-672, left lateral view. I. CP-673, dorsal view. – J. Cytherelloidea aff. globosa Kaye, 1964, CP-756, right lateral view. – K. Cytherella sp. 1, CP-670, lateral view. – L. Bairdoppilata pseudoseptentrionalis Mertens, 1956, CP-676, right lateral view. – M. Bairdoppilata sp. 1, CP-678, right lateral view. – N–P. Bairdoppilata comanchensis (Alexander, 1929) comb. nov., CP-674. N. Left lateral view. O. Right lateral view. P. Dorsal view. – Q–S. Bairdoppilata sp. 2, CP-757. Q. Right lateral view. R. Left lateral view. S. Dorsal view. Scale bars = 100 μm.
Fig. 4 in Ostracoda (Arthropoda, Crustacea) from the Riachuelo Formation, Sergipe-Alagoas Basin, Brazil, Upper Aptian-Albian
Fig. 4. Lithology of sampled Riachuelo Formation outcrops in the Sergipe-Alagoas Basin, Brazil: Santa Bárbara (A), Penha (B), Estre (C), P384 (D), Porto dos Barcos 3 (E), Massapê (F) and São José 1 (G).
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.