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11 results for “Arthrorhaphis”
Table 1 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
<p><b>Table 1.</b> Strictly lichenicolous species of <i>Arthrorhaphis</i> with their host lichens and references.</p><table><tbody><tr><th>Taxon</th><th>Hosts</th><th>References</th></tr></tbody><tbody><tr><th><i>Arthrorhaphis aeruginosa</i></th><td><i>Cladonia</i> spp. squamules, rarely podetia</td><td>Santesson & Tønsberg, 1994</td></tr><tr><th><i>Arthrorhaphis arctoparmeliae</i></th><td><i>Arctoparmelia incurva</i></td><td>Kocourková & Van den Boom, 2005</td></tr><tr><th><i>Arthrorhaphis grisea</i></th><td><i>Baeomyces rufus</i>, <i>B. placophyllus</i></td><td>Obermayer, 1994</td></tr><tr><th><i>Arthrorhaphis muddii</i></th><td><i>Dibaeis baeomyces</i></td><td>Obermayer, 1994</td></tr><tr><th><i>Arthrorhaphis olivaceae</i></th><td><i>Melanohalea olivacea</i></td><td>Santesson & Tønsberg, 1994</td></tr><tr><th><i>Arthrorhaphis phyllobaeis</i></th><td><i>Phyllobaeis imbricata</i></td><td>Etayo, 2017</td></tr></tbody></table>
Fig. 6. A in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 6. A, Arthrorhaphis aeruginosa (TØnsberg 19019, BG, holotype); B, A. arctoparmeliae (Kocourková & Kocourek JK5484 dpl., C); C, A. olivaceae (Santesson 11677, BG, isotype); D, A. muddii (Woods s.n., E, holotype); E, A. grisea (Th.M. Fries s.n., UPS, holotype); F, A. vulgaris (Norrlin s.n., H). — Scale: A–C, 0.5 mm; D–F, 1 mm. Photos: A. Frisch.
Fig. 5 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 5. Ascospore types distinguished in lichenised Arthrorhaphis (schematic redrawing based on illustrations in Obermayer, 1994, 1995; compare the cited literature for further details). A, Citrinella type; B, Alpina type; C, Vacillans type; D, Jungens type. — Ascospores of the citrinella type are arranged parallel, 1-seriate, while those of the alpina, vacillans, and jungens types are stacked in the asci. Ascospores of the variable jungens type are intermediary between the alpina and vacillans types, and either resembling the vacillans type but longer, or similar in size but 4–5(–7)-septate. — Scale: A–D, 10 μm.
Fig. 1. Bayesian 50 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 1. Bayesian 50% majority-rule consensus tree from analysis of MSA-1, showing the placement of Arthrorhaphis as sister to Ostropales, Ostropomycetidae. Branches supported by BPP ≥ 0.95 and ML BS ≥ 70% are indicated by bold black lines; branches supported only by BPP ≥ 0.95 are indicated by bold grey lines. Numbers in brackets represent clades discussed in the text.
Fig. 2. Bayesian 50 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 2. Bayesian 50% majority-rule consensus tree from analysis of MSA-2, showing the basal position of the exclusively parasitic species in Arthrorhaphis. The evolution of lichenised thalli containing pulvinic acid derivatives in the A. alpina- and the A. citrinella s.l. clades is indicated by an asterisk. Branches supported by BPP ≥ 0.95 and ML BS ≥ 70% are indicated by bold black lines; branches supported only by BPP ≥ 0.95 are indicated by bold grey lines. Numbers in brackets represent clades discussed in the text. Graphical representation of species delimitations in bGMYC, bPtP and bP&P: Colours represent delimited species for each species delimitation analysis independently, but have been selected to highlight delimitations congruent across analyses. White represents missing data. The colouring scheme applies only to the current figure.
Fig. 4 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 4. Partial representation of the Bayesian 50% majority-rule consensus tree from analysis of MSA-2, showing the Arthrorhaphis citrinella s.l. clade. Branches supported by BPP ≥ 0.95 and ML BS ≥ 70% are indicated by bold black lines; branches supported only by ML BS ≥ 70% are indicated by thin double lines. Numbers in brackets represent clades discussed in the text. Character states: 1 Life form: juvenile parasitism absent (light green), present (reddish brown), missing data (white). 2 Thallus areolae: present (yellow), absent (white); 3 Soredia: citrinella type (turquoise), farinosa type (light green), vulgaris type (dark green), absent (white); 4 Medulla: pale yellow (yellow), cavity (grey), absent (white); 5 Ca-oxalate crystals: absent (white); 6 Ascospores: citrinella type (blue), absent (white). Graphical representation of species delimitations in bGMYC, bPtP, and bP&P: Colours represent delimited species for each species delimitation analysis independently, but have been selected to highlight delimitations congruent across analyses. White represents missing data. The colouring scheme applies only to the current figure.
Fig. 8. A in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 8. A, Arthrorhaphis alpina (Schaer., Lichenes Helvetici Exsiccati 532, G, lectotype); B, A. alpina var. jungens (Lichenotheca Graecensis 23, E, isotype); C, A. alpina (Ohmura 10119, TNS); D, A. alpina var. jungens (Kalb, Lichenes Neotropici 577, M); E, A. alpina (Brusse 4515, UPS); F, "A. septentrionalis" (Hansen 026, C). — Scale: A–F, 1 mm. Photos: A. Frisch.
Table 2 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
<p><b>Table 2.</b> Results from the bGMYC analyses for mrSSU, nrITS, and <i>RPB1</i> gene loci.</p><table><tbody><tr><th></th><th>mrSSU</th><th>nrITS</th><th><i>RPB1</i></th></tr></tbody><tbody><tr><th>Likelihood null model</th><td>1231.294</td><td>1199.214</td><td>1160.623</td></tr><tr><th>Maximum likelihood GMYC model</th><td>1264.052</td><td>1230.614</td><td>1180.092</td></tr><tr><th>Likelihood ratio</th><td>65.51679</td><td>62.80141</td><td>38.93693</td></tr><tr><th>Result of likelihood ratio test</th><td>5.884182e-15***</td><td>2.309264e-14***</td><td>3.507144e-09***</td></tr><tr><th>Number of maximum likelihood clusters with confidence interval in brackets</th><td>10 (9–10)</td><td>15 (15–15)</td><td>12 (12–20)</td></tr><tr><th>Number of maximum likelihood entities with confidence interval in brackets</th><td>15 (14–15)</td><td>19 (19–20)</td><td>15 (15–30)</td></tr><tr><th>Threshold time</th><td>–0.002228722</td><td>–0.007533381</td><td>–0.002175746</td></tr></tbody></table>
Table 3 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
<p><b>Table 3.</b> Summary of species delimitations from the bGMYC, bPtP, and bP&P analyses.</p><table><tbody><tr><th></th><th>mrSSU</th><th>bGMYC nrITS</th><th><i>RPB1</i></th><th>bPtP</th><th>15</th><th>bP&P</th><th>22</th></tr></tbody><tbody><tr><th><i>A. aeruginosa</i></th><td>1</td><td>1</td><td>–</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. alpina</i> s.l. (incl. var. <i>jungens</i>)</th><td>4</td><td>3</td><td>5</td><td>1</td><td>1</td><td></td><td>8</td></tr><tr><th><i>A. arctoparmeliae</i></th><td>1</td><td>1</td><td>–</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. bullata</i></th><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. catolechioides</i></th><td>–</td><td>1</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. citrinella</i></th><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. farinosa</i></th><td>1</td><td>3</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. grisea</i></th><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. muddii</i></th><td>1</td><td>1</td><td>1</td><td>2</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. olivaceae</i></th><td>–</td><td>1</td><td>–</td><td>2</td><td>1</td><td></td><td>1</td></tr><tr><th>“ <i>A. septentrionalis</i> ”</th><td>0</td><td>1</td><td>1</td><td>2</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A</i>. sp. 1</th><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. vulgaris</i></th><td>1</td><td>1</td><td>1</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th><i>A. vacillans</i></th><td>1</td><td>1</td><td>1</td><td>0</td><td>1</td><td></td><td>1</td></tr><tr><th><i>Anzina carneonivea</i> (outgroup)</th><td>1</td><td>1</td><td>–</td><td>1</td><td>1</td><td></td><td>1</td></tr><tr><th>Sum</th><td>15</td><td>19</td><td>15</td><td>17</td><td>15</td><td></td><td>22</td></tr></tbody></table>
Fig. 3 in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 3. Partial representation of the Bayesian 50% majority-rule consensus tree from analysis of MSA-2, showing the Arthrorhaphis alpina s.l. clade. Branches supported by BPP ≥ 0.95 and ML BS ≥ 70% are indicated by bold black lines; branches supported only by ML BS ≥ 70% are indicated by thin double lines. Numbers in brackets represent clades discussed in the text. "T" indicates an isotype specimen of A. alpina var. jungens. Character states: 1 Life form: juvenile parasitism absent (light green), present (reddish brown). 2 Thallus areolae: present (yellow); 3 Soredia: present (dark green), absent (white); 4 Medulla: pale yellow (yellow), white (blue), cavity (grey), absent (white); 5 Ca-oxalate crystals: present (dark brown), absent (white); 6 Ascospores: alpina type (red), jungens type (light orange), vacillans type (dark olive), 'septentrionalis type' (grey), absent (white). Graphical representation of species delimitations in bGMYC, bPtP, and bP&P: Colours represent delimited species for each species delimitation analysis independently, but have been selected to highlight delimitations congruent across analyses. White represents missing data. The colouring scheme applies only to the current figure.
Fig. 7. A in A phylogenetic survey of the ascomycete genus Arthrorhaphis (Arthrorhaphidaceae, Lecanoromycetes) including new species in Arthrorhaphis citrinella sensu lato
Fig. 7. A, Arthrorhaphis catolechioides (Moberg & Owe-Larsson NZ2:5, UPS); B, A. citrinella (Odelvik 10598, S); C, A. citrinella (Frisch 15/No100, TRH); D, A. farinosa (Ohmura 9312, TNS); E, A. farinosa (Thor 33718, UPS); F, A. bullata (Ohmura 10730, TNS). — Scale: A, B, E & F, 1 mm; C, 0.5 mm; D, 5 mm. Photos: A. Frisch.
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