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25 results for “Artocarpus”
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
Premise of the study: Untapped information about allelic diversity within populations and individuals (i.e. heterozygosity) could improve phylogenetic resolution and accuracy. Many phylogenetic reconstructions ignore heterozygosity because it is difficult to assemble allele sequences and combine allelic data across unlinked loci and it is unclear how reconstruction methods accommodate variable sequences. We review the common methods of including heterozygosity in phylogenetic studies and present a novel method for assembling allele sequences from target enriched Illumina sequencing libraries. Methods: We perform supermatrix phylogeny reconstruction and species tree estimation of Artocarpus based on three methods of accounting for heterozygous sequences: a consensus method based on de novo sequence assembly, the use of ambiguity characters, and a novel method for phasing alleles. We characterize the extent to which highly heterozygous sequences impeded phylogeny reconstruction and determine whether the use of allele sequences improves resolution or decreases topological uncertainty. Key Results: We show that it is possible to infer phased alleles from target enriched Illumina libraries. We find that highly heterozygous sequences do not contribute disproportionately to poor phylogenetic resolution and that the use of allele sequences for phylogeny reconstruction does not have a clear effect on phylogenetic resolution or topological consistency. Conclusions: We provide a framework for inferring phased alleles from target enrichment data and for assessing the contribution of allelic diversity to phylogenetic reconstruction. In our dataset, the impact of allele phasing on phylogeny is minimal compared to the impact of using phylogenetic reconstruction methods that account for gene tree incongruence.
FIGURE 7 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 7. Holotype of Alloiothucha constanti, comb. nov.: dorsal view (A); lateral view (B). Arrows mark hood and paranotum. Scale bar: 1.0 mm. Copyright Magnolia Press. Allowed use by Katrina Menard. Modified after Guilbert et al. (2018).
FIGURE 4 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 4. Male terminalia of Alloiothucha artocarpi, dorsal view: paramere (A) and pygophore (B). Ostiolar peritreme of A. artocarpi, lateral view (C). Scale bars: 0.1 mm.
FIGURE 5 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 5. Holotype of Alloiothucha philippinensis: dorsal view (A); lateral view (B); labels (C). Arrows mark hood and paranotum. Copyright United States National Museum of Natural History. Allowed use by Thomas J. Henry. Images taken by United States National Museum of Natural History (2022).
FIGURE 2 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 2. Thoracic structures of Alloiothucha artocarpi: pronotum, dorsal and dorsolateral views (A, B); hemelytra, dorsolateral view (C). Scale bars: 0.2 mm.
FIGURE 1 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 1. Habitus images of Alloiothucha artocarpi from Laos, dorsal and lateral views (A, B). Scale bar: 1.0 mm.
FIGURE 8 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 8. Alloiothucha physalia, comb. nov.: dorsal habitus (A); pronotum, lateral view (B); pronotum excluding hood, dorsal view (C). Arrows mark hood and paranotum. Modified after Drake & Ruhoff (1965a).
FIGURE 3 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 3. Rostrum and sternal laminae of Alloiothucha artocarpi, ventral view (A). Apical part of the abdomen of A. artocarpi, ventral view: male (B) and female (C). Scale bars: 0.2 mm.
FIGURE 6 in Alloiothucha artocarpi (Horváth) (Hemiptera: Heteroptera: Tingidae) found on jackfruit, Artocarpus heterophyllus Lam. (Moraceae): first representative of the genus from Laos, and the synonymy of Cetiothucha Drake & Ruhoff
FIGURE 6. Holotype of Alloiothucha necopinata: dorsal view (A); lateral view (B); labels (C). Arrows mark hood and paranotum. Copyright United States National Museum of Natural History. Allowed use by Thomas J. Henry. Images taken by United States National Museum of Natural History (2022).
Effect of Using Ethanol Extract of Artocarpus heterophyllus Leaves and Olea Europa Fruit Oil Combination on Facial Skin
<p>The volunteers were applied to the clay mask once a week and then were observed before and after application, as follows: moisture, skin oil, skin texture, collagen, wrinkle, pigment, and sensitivity using a skin analyzer (Skin Observed System).</p>
Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae)
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Data from: A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)
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Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
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Figure 4 from: Fakhrudin N, Pertiwi KK, Takubessi MI, Susiani EF, Nurrochmad A, Widyarini S, Sudarmanto A, Nugroho AA, Wahyuono S (2020) A geranylated chalcone with antiplatelet activity from the leaves of breadfruit (Artocarpus altilis). Pharmacia 67(4): 173-180. https://doi.org/10.3897/pharmacia.67.e56788
Figure 4 Putative interactions of ligands and the binding pockets of P2Y12 receptor. The binding modes of GTDC (A), and ticagrelor (B) at P2Y12 receptor. (C) The overlay-complexes of GTDC (blue) and AZD 1283 (red); and (D) Ticagrelor (blue) and AZD 1283 (red) at the binding sites of P2Y12 receptor. The table shows the docking score of the compounds to P2Y12 receptor.
Figure 2 from: Fakhrudin N, Pertiwi KK, Takubessi MI, Susiani EF, Nurrochmad A, Widyarini S, Sudarmanto A, Nugroho AA, Wahyuono S (2020) A geranylated chalcone with antiplatelet activity from the leaves of breadfruit (Artocarpus altilis). Pharmacia 67(4): 173-180. https://doi.org/10.3897/pharmacia.67.e56788
Figure 2 Antiplatelet activities of AAE and GDTC in ADP-induced platelet aggregation. Sigmoidal dose–response curves showing the antiplatelet activity of AAE (A), GTDC, and ticagrelor (B). The percentage of platelet aggregation was calculated on the basis of the decrease in the aggregation peak. Data were mean ± SD (n = 3); *p < 0.05 relative to the solvent-treated group (set as 100% aggregation).
Figure 3 from: Fakhrudin N, Pertiwi KK, Takubessi MI, Susiani EF, Nurrochmad A, Widyarini S, Sudarmanto A, Nugroho AA, Wahyuono S (2020) A geranylated chalcone with antiplatelet activity from the leaves of breadfruit (Artocarpus altilis). Pharmacia 67(4): 173-180. https://doi.org/10.3897/pharmacia.67.e56788
Figure 3 Curve showing the antiplatelet activity profiles of GTDC in ADP-induced platelet aggregation. A Baseline or peak of platelet aggregation (solvent treatment); B Peak of platelet aggregation in GTDC or ticagrelor treatments; C Platelet disaggregation in GTDC or ticagrelor treatments. Blue line, solvent; black line, 0.1 µM GTDC; red line, 1 µM GTDC; and green line, 0.1 µM tigacrelor.
Data from: Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
Premise of the study: We used moderately low-coverage (17×) whole-genome sequencing of Artocarpus camansi (Moraceae) to develop genomic resources for Artocarpus and Moraceae. Methods and Results: A de novo assembly of Illumina short reads (251,378,536 pairs, 2 × 100 bp) accounted for 93% of the predicted genome size. Predicted coding regions were used in a three-way orthology search with published genomes of Morus notabilis and Cannabis sativa. Phylogenetic markers for Moraceae were developed from 333 inferred single-copy exons. Ninety-eight putative MADS-box genes were identified. Analysis of all predicted coding regions resulted in preliminary annotation of 49,089 genes. An analysis of synonymous substitutions for pairs of orthologs (Ks analysis) in M. notabilis and A. camansi strongly suggested a lineage-specific whole-genome duplication in Artocarpus. Conclusions: This study substantially increases the genomic resources available for Artocarpus and Moraceae and demonstrates the value of low-coverage de novo assemblies for nonmodel organisms with moderately large genomes.
Figure 3 from: Suciati S, Laili ER, Haula H, Tumewu L, Nuengchamnong N, Suphrom N, Widyawaruyanti A (2024) Phytoconstituents, Antioxidant, and cholinesterase inhibitory activities of the leaves and stem extracts of Artocarpus sericicarpus. Pharmacia 71: 1-8. https://doi.org/10.3897/pharmacia.71.e112499
Figure 3 Base peak chromatograms (BPC) of the a. leaves and b. stem ethanolic extracts of A. sericicarpus.
Figure 1 from: Suciati S, Laili ER, Haula H, Tumewu L, Nuengchamnong N, Suphrom N, Widyawaruyanti A (2024) Phytoconstituents, Antioxidant, and cholinesterase inhibitory activities of the leaves and stem extracts of Artocarpus sericicarpus. Pharmacia 71: 1-8. https://doi.org/10.3897/pharmacia.71.e112499
Figure 1 Concentration-dependent response of A. sericicarpus extracts against AChE (a) and BChE (b); each value is expressed as means ± SEM (n = 3). LE : leaves ethanolic extract; LW: leaves water extract; SE: stem ethanolic extract; SW: stem water extract
Figure 4 from: Suciati S, Laili ER, Haula H, Tumewu L, Nuengchamnong N, Suphrom N, Widyawaruyanti A (2024) Phytoconstituents, Antioxidant, and cholinesterase inhibitory activities of the leaves and stem extracts of Artocarpus sericicarpus. Pharmacia 71: 1-8. https://doi.org/10.3897/pharmacia.71.e112499
Figure 4 Molecular networking of the compounds from the leaves and stem extracts of A. sericicarpus (a) with expansion of selected clusters (b).
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