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51 results for “Asellidae”
The World Asellidae database and phylogeny: a collaborative backbone resource for comparative studies of subterranean life evolution
<p>Supplementary material for the article "The World Asellidae database and phylogeny: a collaborative backbone resource for comparative studies of subterranean life evolution"</p> <p>- SI Figure 5: The World Asellidae phylogeny with credibility Intervals for the age of the nodes. Node labels of the phylogeny indicate the 95% credibility intervals of the estimated dates.</p> <p>- SI Table 1: Metadata for the 2093 COI sequences used in the study.</p> <p>- SI Table 4: Alignment of the 2093 COI sequences used for the delimitation of MOTUs.</p> <p>- SI Table 5: Alignment of the 424 COI sequences used for the four-gene dated phylogeny.</p> <p>- SI Table 6: Alignment of the 424 16S sequences used for the four-gene dated phylogeny.</p> <p>- SI Table 7: Alignment of the 424 FASTKD4 sequences used for the four-gene dated phylogeny.</p> <p>- SI Table 8: Alignment of the 424 28S sequences used for the four-gene dated phylogeny.</p> <p>- SI Table 9: Metadata for the DNA sequences used for the 4-gene dated phylogeny.</p> <p>- SI Table 11: Data on body size, sexual body size dimorphism, habitat specialization and habitat size used in comparative analyses.</p> <p>- SI Table 12: Metadata for the DNA sequences deposited in NCBI as part of this study.</p>
Figure 5 in A new and rare epigean asellid from western Mexico Caecidotea contrerasbalderasi sp. nov. (Isopoda: Asellidae) with a new suture pattern in pleopod IV for the Mexican epigean species
Figure 5. Suture patterns of pleopod IV: A, Pattern A, with 2 false sutures and apical incision; B, Pattern B, with single sigmoid false suture; C, Pattern C, without sutures. Figures A and B taken and redrawn from Lewis and Bowman (1981: 6, fig 7).
Figure 2 in A new and rare epigean asellid from western Mexico Caecidotea contrerasbalderasi sp. nov. (Isopoda: Asellidae) with a new suture pattern in pleopod IV for the Mexican epigean species
Figure 2. Caecidotea contrerasbalderasi sp. nov., Pantanal, municipality Xalisco, Nayarit, Mexico. A, Holotype male (UANL- FCB-C-6240), 7.0 mm. B, Paratype female (UANL-FCB-C-6241) 6.0 mm. A, male habitus. B, female habitus. Scale bars = 1.0 mm.
Figure 1 in A new and rare epigean asellid from western Mexico Caecidotea contrerasbalderasi sp. nov. (Isopoda: Asellidae) with a new suture pattern in pleopod IV for the Mexican epigean species
Figure 1. Type locality of Caecidotea contrerasbalderasi sp. nov., Pantanal, municipality Xalisco, Nayarit, México.
Figure 4 in A new and rare epigean asellid from western Mexico Caecidotea contrerasbalderasi sp. nov. (Isopoda: Asellidae) with a new suture pattern in pleopod IV for the Mexican epigean species
Figure 4. Caecidotea contrerasbalderasi sp. nov., holotype male (UANL-FCB-C-6240), 7.0 mm, left pleopods, Pantanal, Municipality Xalisco, Nayarit, Mexico. A, pleopod I; B, pleopod II; C, D, dorsal and ventral view of the apex of the endopodite; E, pleopod III; F, pleopod IV; G, pleopod V. Scale bars: A, B = 0.1 mm, C, D = 0.054 mm, E-G = 0.2 mm.
Figure 3 in A new and rare epigean asellid from western Mexico Caecidotea contrerasbalderasi sp. nov. (Isopoda: Asellidae) with a new suture pattern in pleopod IV for the Mexican epigean species
Figure 3. Caecidotea contrerasbalderasi sp. nov., holotype male (UANL-FCB-C-6240), 7.0 mm, paratype female (FCB-UANL-6241), Pantanal, municipality Xalisco, Nayarit, Mexico. A, male pereiopod I; B, female pereiopod I; C, male pereiopod II; D, male pereiopod III; E, female pereiopod IV; F, pereiopod V; G, female pereiopod VI. H, pereiopod VII. Scale bar: A, B = 0.15, C-H = 0.2 mm.
FIGURE 6. Bragasellus oscari n in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 6. Bragasellus oscari n. sp. Paratype, MNCN 20.04/12507, ♂, A, right pleopod I exopod, anterior view; B, left pleo- pod II, anterior view. Paratype, MHNUSC_10115, ♀, C, right pleopod II, anterior view. Paratype, MNCN 20.04/12507, ♂. D, left pleopod II exopod, anterior view. Scale bar. A, B, C = 0.10 mm; C = 0.22 mm.
FIGURE 3. Bragasellus oscari n in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 3. Bragasellus oscari n. sp. Paratype, MNCN 20.04/12507, ♂, A, antennula; B, right mandible; C, right maxillula; D, right maxilliped exopod. Scale bar. A, D = 0.22 mm; B, C = 0.10 mm.
FIGURE 1. A in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 1. A, map of the Iberian Peninsula showing distribution of the species of genus Bragasellus: *, type locality of the new species 1, B. afonsoae; 2, B. aireyi; 3, B. bragai; 4,; 5, B. comasioides; 6, B. conimbricensis; 7, B. cortesi; 8, B. escolai; 9, B. frontellum; 10, B. incurvatus; 11, B. lagari; 12, B. lagarioides; 13, B. meijersae; 14, B. molinai; 15, B. notenboomi; 16, B. pauloae; 17, B. peltatus; 18, B rouchi; 19, B. seabrai; 20, B. stocki; Black numbers and symbols: epigean species; grey numbers: hypogean species; B, sampling locality; C, closer view of the same; D, underwater photograph of live animals in their habitat.
FIGURE 4. Bragasellus oscari n in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 4. Bragasellus oscari n. sp. Paratype, MNCN 20.04/12507, ♂, A, antennula (ae = aesthetascs); B, detail of distal end of the same; C, right mandible; D, left mandible; E, right maxillula; F, detail of distal lamella of maxillula; G, detail of basal lamella of maxillula; H, right maxilla; I, right maxilliped endopod; J, retinacula of maxilliped; K, distal part of maxilliped endopod. Scale bars. A, I = 0.22 mm; B, C = 88 μm; D = 80 μm; E = 0.18 mm; F, H, K = 0.11 mm; G = 60 μm; J = 0.13 mm.
FIGURE 5. Bragasellus oscari n in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 5. Bragasellus oscari n. sp. Paratype, MNCN 20.04/12507, ♂, A, right pereopod I, posterior view. Paratype, MH- NUSC_10115, ♀, B, left pereopod I, anterior view. Paratype, MNCN 20.04/12507, ♂, C, right pereopod VII, posterior view; D, left male uropod, dorsal view. Paratype, MHNUSC_10115, ♀, E, left female uropod, dorsal view. Scale bar. A, B, D = 0.22 mm; C = 0.45 mm.
FIGURE 2. Bragasellus oscari n in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 2. Bragasellus oscari n. sp. Holotype, MNCN 20.04/12506, ♂, A, habitus, dorsal view; B, lateral view of the same. Paratype, MNCN 20.04/12508, ♂, C, pleotelson and uropods. D, live specimens showing uniform black pigmentation. Scale bars. A, B = 2 mm.
FIGURE 7 Bragasellus oscari n in A new species of Bragasellus (Isopoda, Asellidae) from NW Spain, with a key to the known species of the genus
FIGURE 7 Bragasellus oscari n. sp. Paratype, MNCN 20.04/12507, ♂, A, right pereopod I, posterior view; B, detail of dac- tylus and propodus of the same. Paratype, MHNUSC_10115, ♀, C, right pereopod I, posterior view; D, detail of dactylus and propodus of the same. Paratype, MNCN 20.04/12507, ♂, E, right pleopod I exopod, anterior view; F, left pleopod II, posterior view. Paratype, MHNUSC_10115, ♀, G, right pleopod II, anterior view. Paratype, MNCN 20.04/12507, ♂, H, left pleopod III, anterior view; I, right pleopod III, anterior view; J, external margin of the same. Scale bars. A = 0.44 mm; B, J = 88 μm; C, I = 0.26 mm; D, E, F, G = 0.14 mm; H = 0.52 mm.
6255 gene alignments of Asellidae CDS
<p>Families of orthologous genes used in "<strong>No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes"</strong></p> <p>The 6,255 alignments used in this publication are archived here. Each alignment corresponds to one "pattern" (~ gene family, except when one family X is composed of several patterns = e.g. multigenic family). Each alignment includes between 2 and 26 species. These alignments have been created with:</p> <ul> <li>prank -codon -F</li> <li>GBlocks -b5=h (to allow some gaps)</li> </ul> <p>Alignment are named according to the corresponding family_pattern, e.g. "FAM003424_1.fas.prank_codon.best.fas-gb.bis" corresponds to the family "003424" and the pattern "1". They are composed of several fasta sequences, each sequence corresponding to one species. The name of each fasta sequence starts with the species code (e: BMOV, PCANC) in upper letters. Gaps are present ("----"). ATTENTION: species order differs in each alignment!</p> <p> </p> <p>Table of the correspondance species - code:</p> <p>Species Code couple eco<br /> P. beticus PBTS c1 epi<br /> P. jaloniacus PJJ c1 hypo<br /> P. aragonensis PARE c2 epi<br /> P. spelaeus PSSE c2 hypo<br /> B. peltatus BPM c3 epi<br /> B. molinai BMOV c3 hypo<br /> P. ibericus PIBB c4 epi<br /> P. arthrodilus PATL c4 hypo<br /> P. meridianus PMLL c5 epi<br /> P. margalefi PMAF c5 hypo<br /> P. granandensis PGRP c6 epi<br /> P. solanasi PSOG c6 hypo<br /> P. coxalis PCOB c7 epi<br /> P. parvulus PPRS c7 hypo<br /> P. assaforensis PASA c8 epi<br /> P. rectus PRUE c8 hypo<br /> P. karamani PKK c9 epi<br /> P. hercegovinensis PHEZ c9 hypo<br /> P. coiffaiti PCOIP c10 epi<br /> P. cavaticus PCBF c10 hypo<br /> P. racovitzai PRBE c11 epi<br /> P. escolai PECD c11 hypo<br /> P. ortizi POJ c12 epi<br /> P. grafi PGC c12 hypo<br /> P. ebrensis PEF c13 epi<br /> P. cantabricus PCANC c13 hypo</p> <p>Remark: out of these 6,255 alignments, 8 alignments are empty (when Gblock has removed ALL aligned positions): [1] "FAM000157_5.fas" "FAM000587_3.fas" "FAM000615_1.fas" "FAM008836_1.fas" [5] "FAM013862_1.fas" "FAM015586_1.fas" "FAM017544_1.fas" "FAM022381_1.fas"</p> <p> </p>
FIGURE 14 in Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a largescale biogeographical context
FIGURE 14. Dendrogram based on UPGMA cluster analysis using the faunistic similarity data obtained for each landscape cluster: AUa, Amur-Ussury area; SSd, South Seaside district; MSd, East Manchuria Seaside district (see ESupplement5.pdf).
FIGURE 15 in Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a largescale biogeographical context
FIGURE 15. Paleogeographic reconstruction before opening of the Japan Sea: (a) Oligocene (following Itoh 2017, p. 86, fig. 1); (b) Early Miocene (modified from Uemura 2006; in Ozawa 2016, p. 137, fig. 14). Nipponasellus (red dots), Phreatoasellus (yellow dots), Sibirasellus (green dots).
FIGURE 13 in Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a largescale biogeographical context
FIGURE 13. Scanning electron micrographs of pleopod 2 of Nipponasellus matsumotoi spec. nov., adult male: (A) pair of pleopods 2, ventral view; (B) endopodite of pleopod 2, right; (C, D) appendix masculina enlarged, right and left.
FIGURE 11. Nipponasellus matsumotoi spec. nov., holotype X54659 in Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a largescale biogeographical context
FIGURE 11. Nipponasellus matsumotoi spec. nov., holotype X54659/Cr-2477-FEFU, male, 5.5 mm: (A) pereopod 1, with enlarged palm; (B) pereopod 2; (C) pereopod 3; (D) pereopod 4; (E) pereopod 5; (F) pereopod 6; (G) pereopod 7.
FIGURE 4 in Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a largescale biogeographical context
FIGURE 4. Habitus of examined specimens: (A, B) Nipponasellus sudzukhensis spec. nov., holotype X54657/Cr-2475-FEFU, male, 5.5 mm, dorsal view (A); lateral view (B). (C, D) Nipponasellus matsumotoi spec. nov., holotype X54659/Cr-2477-FEFU, male, 5.0 mm, dorsal view (C); lateral view (D).
FIGURE 9 in Trans-Japan Sea land-bridge disjunction: A case of vicariance in the subterranean genus Nipponasellus (Crustacea, Isopoda, Asellidae) in a largescale biogeographical context
FIGURE 9. Scanning electron micrographs of pleopod 2 of Nipponasellus sudzukhensis spec. nov., adult male: (A) pair of pleopods 2, ventral view; (B) endopodite of pleopod 2, right; (C, D) appendix masculina enlarged, right and left.
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