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9 results for “BHL”
A biodiversity dataset graph: Biodiverity Heritage Library (BHL)
<p>A biodiversity dataset graph: BHL</p> <p>The intended use of this archive is to facilitate (meta-)analysis of the Biodiversity Heritage Library (BHL). The Biodiversity Heritage Library improves research methodology by collaboratively making biodiversity literature openly available to the world as part of a global biodiversity community.</p> <p>This dataset provides versioned snapshots of the BHL network as tracked by Preston [2] between 2019-05-19 and 2020-05-09 using "preston update -u https://biodiversitylibrary.org".</p> <p>The archive consists of 256 individual parts (e.g., preston-00.tar.gz, preston-01.tar.gz, ...) to allow for parallel file downloads. The archive contains three types of files: index files, provenance logs and data files. In addition, index files have been individually included in this dataset publication to facilitate remote access. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when, what and where the BHL content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 . </p> <p>To retrieve and verify the downloaded BHL biodiversity dataset graph, first concatenate all the downloaded preston-*.tar.gz files (e.g., cat preston-*.tar.gz > preston.tar.gz). Then, extract the archives into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using:</p> <p>$ java -jar preston.jar clone --remote https://zenodo.org/record/3849560/files</p> <p>After that, verify the index of the archive by reproducing the following provenance log history:</p> <p>$ java -jar preston.jar history<br> <0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a> .<br> <hash://sha256/41b19aa9456fc709de1d09d7a59c87253bc1f86b68289024b7320cef78b3e3a4> <http://purl.org/pav/previousVersion> <hash://sha256/89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a> .<br> <hash://sha256/7582d5ba23e0d498ca4f55c29408c477d0d92b4fdcea139e8666f4d78c78a525> <http://purl.org/pav/previousVersion> <hash://sha256/41b19aa9456fc709de1d09d7a59c87253bc1f86b68289024b7320cef78b3e3a4> .<br> <hash://sha256/a70774061ccded1a45389b9e6063eb3abab3d42813aa812391f98594e7e26687> <http://purl.org/pav/previousVersion> <hash://sha256/7582d5ba23e0d498ca4f55c29408c477d0d92b4fdcea139e8666f4d78c78a525> .<br> <hash://sha256/007e065ba4b99867751d688754aa3d33fa96e6e03133a2097e8a368d613cd93a> <http://purl.org/pav/previousVersion> <hash://sha256/a70774061ccded1a45389b9e6063eb3abab3d42813aa812391f98594e7e26687> .<br> <hash://sha256/4fb4b4d8f1ae2961311fb0080e817adb2faa746e7eae15249a3772fbe2d662a1> <http://purl.org/pav/previousVersion> <hash://sha256/007e065ba4b99867751d688754aa3d33fa96e6e03133a2097e8a368d613cd93a> .<br> <hash://sha256/67cc329e74fd669945f503917fbb942784915ab7810ddc41105a82ebe6af5482> <http://purl.org/pav/previousVersion> <hash://sha256/4fb4b4d8f1ae2961311fb0080e817adb2faa746e7eae15249a3772fbe2d662a1> .<br> <hash://sha256/e46cd4b0d7fdb51ea789fa3c5f7b73591aca62d2d8f913346d71aa6cf0745c9f> <http://purl.org/pav/previousVersion> <hash://sha256/67cc329e74fd669945f503917fbb942784915ab7810ddc41105a82ebe6af5482> .<br> <hash://sha256/9215d543418a80510e78d35a0cfd7939cc59f0143d81893ac455034b5e96150a> <http://purl.org/pav/previousVersion> <hash://sha256/e46cd4b0d7fdb51ea789fa3c5f7b73591aca62d2d8f913346d71aa6cf0745c9f> .<br> <hash://sha256/1448656cc9f339b4911243d7c12f3ba5366b54fff3513640306682c50f13223d> <http://purl.org/pav/previousVersion> <hash://sha256/9215d543418a80510e78d35a0cfd7939cc59f0143d81893ac455034b5e96150a> .<br> <hash://sha256/7ee6b16b7a5e9b364776427d740332d8552adf5041d48018eeb3c0e13ccebf27> <http://purl.org/pav/previousVersion> <hash://sha256/1448656cc9f339b4911243d7c12f3ba5366b54fff3513640306682c50f13223d> .<br> <hash://sha256/34ccd7cf7f4a1ea35ac6ae26a458bb603b2f6ee8ad36e1a58aa0261105d630b1> <http://purl.org/pav/previousVersion> <hash://sha256/7ee6b16b7a5e9b364776427d740332d8552adf5041d48018eeb3c0e13ccebf27> .</p> <p>To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.</p> <p>$ java -jar preston.jar verify<br> hash://sha256/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca file:/home/preston/preston-bhl/data/e0/c1/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca OK CONTENT_PRESENT_VALID_HASH 49458087 hash://sha256/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca<br> hash://sha256/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99 file:/home/preston/preston-bhl/data/1a/57/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99 OK CONTENT_PRESENT_VALID_HASH 25745 hash://sha256/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99<br> hash://sha256/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c file:/home/preston/preston-bhl/data/85/ef/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c OK CONTENT_PRESENT_VALID_HASH 519892 hash://sha256/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c<br> hash://sha256/251e5032afce4f1e44bfdc5a8f0316ca1b317e8af41bdbf88163ab5bd2b52743 file:/home/preston/preston-bhl/data/25/1e/251e5032afce4f1e44bfdc5a8f0316ca1b317e8af41bdbf88163ab5bd2b52743 OK CONTENT_PRESENT_VALID_HASH 787414 hash://sha256/251e5032afce4f1e44bfdc5a8f0316ca1b317e8af41bdbf88163ab5bd2b52743</p> <p>Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston".</p> <p>Files in this data publication:</p> <p>--- start of file descriptions ---</p> <p>-- description of archive and its contents (this file) --<br> README</p> <p>-- executable java jar containing preston[2] v0.1.15. --<br> preston.jar</p> <p>-- preston archives containing BHL data files, associated provenance logs and a provenance index --<br> preston-[00-ff].tar.gz</p> <p>-- individual provenance index files --<br> 2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a<br> 2b1104cb7749e818c9afca78391b2d0099bbb0a32f2b348860a335cd2f8f6800<br> 4081bc59dff58d63f6a86c623cb770f01e9a355a42495b205bcb538cd526190f<br> 47a2816f8b5600b24487093adcddfea12434cc4f270f3ab09d9215fbdd546cd2<br> 6f99a1388823fca745c9e22ac21e2da909a219aa1ace55170fa9248c0276903c<br> 7ae46d7cd9b5a0f5889ba38bac53c82e591b0bdf8b605f5e48c0dce8fb7b717f<br> 82903464889fea7c53f53daedf4e41fa31092f82619edeb3415eb2b473f74af3<br> 9e8c86243df39dd4fe82a3f814710eccf73aa9291d050415408e346fa2b09e70<br> a8308fbf4530e287927c471d881ce0fc852f16543d46e1ee26f1caba48815f3a<br> bcec6df2ea7f74e9a6e2830d0072e6b2fbe65323d9ddb022dd6e1349c23996e2<br> cfe47c25ec0210ac73c06b407beb20d9c58355cb15bae427fdc7541870ca2e4e<br> f73fc9e70bce8f21f0c96b8ef0903749d8f223f71343ab5a8910968f99c9b8b6</p> <p>--- end of file descriptions ---</p> <p><br> References</p> <p>[1] Biodiversity Heritage Library (BHL, https://biodiversitylibrary.org) accessed from 2019-05-19 to 2020-05-09 with provenance hash://sha256/34ccd7cf7f4a1ea35ac6ae26a458bb603b2f6ee8ad36e1a58aa0261105d630b1.<br> [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 .</p> <p><br> This work is funded in part by grant NSF OAC 1839201 from the National Science Foundation.</p>
A biodiversity dataset graph: Biodiversity Heritage Library (BHL)
<p>A biodiversity dataset graph: Biodiversity Heritage Library </p> <p>Biodiversity datasets, or descriptions of biodiversity datasets, are increasingly available through open digital data infrastructures such as the Biodiversity Heritage Library (BHL, https://biodiversitylibrary.org). "The Biodiversity Heritage Library improves research methodology by collaboratively making biodiversity literature openly available to the world as part of a global biodiversity community." - https://biodiversitylibrary.org , June 2019. </p> <p>However, little is known about how these networks, and the data accessed through them, change over time. This dataset provide snapshots of all OCR item texts (e.g., individual items) available through BHL as tracked by Preston (https://github.com/bio-guoda/preston , https://doi.org/10.5281/zenodo.1410543 ) over period May - June 2019.</p> <p>This snapshot contains about 120GB of uncompressed OCR texts across 227k OCR BHL items. Also, a snapshot of the BHL item catalog at https://www.biodiversitylibrary.org/data/item.txt is included.</p> <p>The archive consists of 256 individual parts (e.g., preston-00.tar.gz, preston-01.tar.gz, ...) to allow for parallel file downloads. The archive contains three types of files: index files, provenance files and data files. Only two index and provenance files are included and have been individually included in this dataset publication. Index files provide a way to links provenance files in time to eestablish a versioning mechanism. Provenance files describe how, when and where the BHL OCR text items were retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543). </p> <p>To retrieve and verify the downloaded BHL biodiversity dataset graph, first concatenate all the downloaded preston-*.tar.gz files (e.g., cat preston-*.tar.gz > preston.tar.gz). Then, extract the archives into a "data" folder. After that, verify the index of the archive by reproducing the following result:</p> <p>$ java -jar preston.jar history<br> <0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a> .<br> <hash://sha256/41b19aa9456fc709de1d09d7a59c87253bc1f86b68289024b7320cef78b3e3a4> <http://purl.org/pav/previousVersion> <hash://sha256/89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a> .</p> <p>To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.</p> <p>$ java -jar preston.jar verify<br> hash://sha256/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca file:/home/preston/preston-bhl/data/e0/c1/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca OK CONTENT_PRESENT_VALID_HASH 49458087<br> hash://sha256/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99 file:/home/preston/preston-bhl/data/1a/57/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99 OK CONTENT_PRESENT_VALID_HASH 25745<br> hash://sha256/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c file:/home/preston/preston-bhl/data/85/ef/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c OK CONTENT_PRESENT_VALID_HASH 519892</p> <p>Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". </p> <p>Files in this data publication:</p> <p>README - this file</p> <p>preston-[00-ff].tar.gz - preston archives containing BHL OCR item texts, their provenance and a provenance index.</p> <p>9e8c86243df39dd4fe82a3f814710eccf73aa9291d050415408e346fa2b09e70 - preston index file<br> 2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a - preston index file</p> <p>89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a - preston provenance file<br> 41b19aa9456fc709de1d09d7a59c87253bc1f86b68289024b7320cef78b3e3a4 - preston provenance file<br> </p> <p>This work is funded in part by grant NSF OAC 1839201 from the National Science Foundation.</p>
A biodiversity dataset graph: BHL
<p>A biodiversity dataset graph: BHL</p> <p>The intended use of this archive is to facilitate (meta-)analysis of the Biodiversity Heritage Library (BHL). The Biodiversity Heritage Library improves research methodology by collaboratively making biodiversity literature openly available to the world as part of a global biodiversity community. </p> <p>This dataset provides versioned snapshots of the BHL network as tracked by Preston [2] between 2019-05-13 and 2019-10-07 using "preston update -u https://biodiversitylibrary.org". </p> <p>The archive consists of 256 individual parts (e.g., preston-00.tar.gz, preston-01.tar.gz, ...) to allow for parallel file downloads. The archive contains three types of files: index files, provenance logs and data files. In addition, index files have been individually included in this dataset publication to facilitate remote access. Index files provide a way to links provenance files in time to establish a versioning mechanism. Provenance files describe how, when, what and where the BHL content was retrieved. For more information, please visit https://preston.guoda.bio or https://doi.org/10.5281/zenodo.1410543 . </p> <p>To retrieve and verify the downloaded BHL biodiversity dataset graph, first concatenate all the downloaded preston-*.tar.gz files (e.g., cat preston-*.tar.gz > preston.tar.gz). Then, extract the archives into a "data" folder. Alternatively, you can use the preston[2] command-line tool to "clone" this dataset using:</p> <p>$ java -jar preston.jar clone --remote https://zenodo.org/record/3484555/files</p> <p>After that, verify the index of the archive by reproducing the following provenance log history:</p> <p>$ java -jar preston.jar history<br> <0659a54f-b713-4f86-a917-5be166a14110> <http://purl.org/pav/hasVersion> <hash://sha256/89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a> .<br> <hash://sha256/41b19aa9456fc709de1d09d7a59c87253bc1f86b68289024b7320cef78b3e3a4> <http://purl.org/pav/previousVersion> <hash://sha256/89926f33157c0ef057b6de73f6c8be0060353887b47db251bfd28222f2fd801a> .<br> <hash://sha256/7582d5ba23e0d498ca4f55c29408c477d0d92b4fdcea139e8666f4d78c78a525> <http://purl.org/pav/previousVersion> <hash://sha256/41b19aa9456fc709de1d09d7a59c87253bc1f86b68289024b7320cef78b3e3a4> .<br> <hash://sha256/a70774061ccded1a45389b9e6063eb3abab3d42813aa812391f98594e7e26687> <http://purl.org/pav/previousVersion> <hash://sha256/7582d5ba23e0d498ca4f55c29408c477d0d92b4fdcea139e8666f4d78c78a525> .<br> <hash://sha256/007e065ba4b99867751d688754aa3d33fa96e6e03133a2097e8a368d613cd93a> <http://purl.org/pav/previousVersion> <hash://sha256/a70774061ccded1a45389b9e6063eb3abab3d42813aa812391f98594e7e26687> .<br> <hash://sha256/4fb4b4d8f1ae2961311fb0080e817adb2faa746e7eae15249a3772fbe2d662a1> <http://purl.org/pav/previousVersion> <hash://sha256/007e065ba4b99867751d688754aa3d33fa96e6e03133a2097e8a368d613cd93a> .<br> <hash://sha256/67cc329e74fd669945f503917fbb942784915ab7810ddc41105a82ebe6af5482> <http://purl.org/pav/previousVersion> <hash://sha256/4fb4b4d8f1ae2961311fb0080e817adb2faa746e7eae15249a3772fbe2d662a1> .</p> <p>To check the integrity of the extracted archive, confirm that each line produce by the command "preston verify" produces lines as shown below, with each line including "CONTENT_PRESENT_VALID_HASH". Depending on hardware capacity, this may take a while.</p> <p>$ java -jar preston.jar verify<br> hash://sha256/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca file:/home/preston/preston-bhl/data/e0/c1/e0c131ebf6ad2dce71ab9a10aa116dcedb219ae4539f9e5bf0e57b84f51f22ca OK CONTENT_PRESENT_VALID_HASH 49458087<br> hash://sha256/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99 file:/home/preston/preston-bhl/data/1a/57/1a57e55a780b86cff38697cf1b857751ab7b389973d35113564fe5a9a58d6a99 OK CONTENT_PRESENT_VALID_HASH 25745<br> hash://sha256/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c file:/home/preston/preston-bhl/data/85/ef/85efeb84c1b9f5f45c7a106dd1b5de43a31b3248a211675441ff584a7154b61c OK CONTENT_PRESENT_VALID_HASH 519892<br> hash://sha256/251e5032afce4f1e44bfdc5a8f0316ca1b317e8af41bdbf88163ab5bd2b52743 file:/home/preston/preston-bhl/data/25/1e/251e5032afce4f1e44bfdc5a8f0316ca1b317e8af41bdbf88163ab5bd2b52743 OK CONTENT_PRESENT_VALID_HASH 787414</p> <p>Note that a copy of the java program "preston", preston.jar, is included in this publication. The program runs on java 8+ virtual machine using "java -jar preston.jar", or in short "preston". </p> <p>Files in this data publication:</p> <p>--- start of file descriptions ---</p> <p>-- description of archive and its contents (this file) --<br> README </p> <p>-- executable java jar containing preston[2] v0.1.8. --<br> preston.jar</p> <p>-- preston archives containing BHL data files, associated provenance logs and a provenance index --<br> preston-[00-ff].tar.gz </p> <p>-- individual provenance index files --<br> 2a5de79372318317a382ea9a2cef069780b852b01210ef59e06b640a3539cb5a<br> 2b1104cb7749e818c9afca78391b2d0099bbb0a32f2b348860a335cd2f8f6800<br> 4081bc59dff58d63f6a86c623cb770f01e9a355a42495b205bcb538cd526190f<br> 6f99a1388823fca745c9e22ac21e2da909a219aa1ace55170fa9248c0276903c<br> 82903464889fea7c53f53daedf4e41fa31092f82619edeb3415eb2b473f74af3<br> 9e8c86243df39dd4fe82a3f814710eccf73aa9291d050415408e346fa2b09e70<br> bcec6df2ea7f74e9a6e2830d0072e6b2fbe65323d9ddb022dd6e1349c23996e2</p> <p>--- end of file descriptions ---</p> <p><br> References </p> <p>[1] Biodiversity Heritage Library (BHL, https://biodiversitylibrary.org) accessed from 2019-05-13 to 2019-10-07 with provenance hash://sha256/4fb4b4d8f1ae2961311fb0080e817adb2faa746e7eae15249a3772fbe2d662a1.<br> [2] https://preston.guoda.bio, https://doi.org/10.5281/zenodo.1410543 . </p> <p><br> This work is funded in part by grant NSF OAC 1839201 from the National Science Foundation.</p>
Flickr: BHL Flickr cropped images
The Biodiversity Heritage Library (BHL), the digitization component of the Encyclopedia of Life, is a consortium of 15 major natural history museum libraries, botanical libraries, and research institutions organized to digitize, serve, and preserve the legacy literature of biodiversity. The BHL is growing globally with project partners in Africa, Australia, Brazil, China, Egypt, and Europe. These projects work together to share content, protocols, services, and digitization best practices. The BHL collection is available for open access and responsible use as a part of a global Biodiversity Commons. We work with the global taxonomic community, rights holders, and other interested parties to ensure that this legacy literature is available to all. "Science has no borders". <p></p>https://www.flickr.com/photos/biodivlibrary/
Flickr: Flickr BHL (544)
The Biodiversity Heritage Library (BHL), the digitization component of the Encyclopedia of Life, is a consortium of 15 major natural history museum libraries, botanical libraries, and research institutions organized to digitize, serve, and preserve the legacy literature of biodiversity. The BHL is growing globally with project partners in Africa, Australia, Brazil, China, Egypt, and Europe. These projects work together to share content, protocols, services, and digitization best practices. The BHL collection is available for open access and responsible use as a part of a global Biodiversity Commons. We work with the global taxonomic community, rights holders, and other interested parties to ensure that this legacy literature is available to all. "Science has no borders". <p></p>https://www.flickr.com/photos/biodivlibrary/
Book of Abstracts from Conference for the Society for the Preservation of Natural History Collections (SPNHC), International Partner – BHL (Biodiversity Heritage Library) and National Partner – NatSCA (Natural Sciences Collections Association) 2022
<p>The complete book of abstracts (Posters & Oral Presentations). </p>
Metrics: BHL data coverage
Open the record for dataset details and reuse information.
Evaluation of the PACE/PACENET BHL Clinical Program
ClinicalTrials.gov study NCT02463266. IPD Sharing: NO. Countries: 1. Publications: 7.
Evaluation of the PACE/PACENET BHL Caregiver Program
ClinicalTrials.gov study NCT02463708. IPD Sharing: NO. Countries: 1. Publications: 5.
ScienceDex guides
Understand access before you commit
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OpenNeuro
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