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30 results for “Bacilli”
Figure 6. Paracaudina bacillis O in The paracaudinid sea cucumbers of Australia and New Zealand (Echinodermata: Holothuroidea: Molpadida: Caudinidae)
Figure 6. Paracaudina bacillis O'Loughlin and Barmos sp. nov. a, b, SEM images of rod ossicles from the mid-body wall of a paratype from Westernport Bay, Victoria (NMV F174893); c, photo of live specimen in Blairgowrie Marina, Port Phillip Bay, at 5 m depth (photo by J. Finn, 18 June 2011).
Fig. 1 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources
Fig. 1. Transmission electron micrographs of cells. Strains: 1, 17J49-1; 2, GH4-58; 3, GH1-30; 4, LM2308; 5, MMS17-SY053; 6, LM2412; 7, LM2319; 8, NA_4; 9, 17J48-21; 10, MMS17-SY085; 11, HMF8043; 12, GH4-63; 13, r2a103fa330; 14, HC_97; 15, 17J76-8; 16, 16_H1_ F15; 17, LT3404; 18, HC_63; 19, KYW1352; 20, 17J30-13; 21, 17J49-7; 22, GH4-13; 23, NA_7; 24, CAU 1472; 25, R2A_1; 26, VM3406; 27, CAU 1479; 28, LPB0164; 29, LPB0165; 30, LPB0166; 31, CAU 1476; 32, CAU 1477; 33, CAU 1478; 34, BT3501; 35, VR3408; 36, LR3301; 37, HMF7345; 38, NM-1.
Fig. 2 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources
Fig. 2. Neighbor-joining phylogenetic tree based on 16S rRNA sequences, showing the relationship between the isolates and their relatives of the order Bacillales. Bootstrap values (>70%) are shown. Escherichia coli DSM 30083T (X801725) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.
Fig. 4 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources
Fig. 4. Neighbor-joining phylogenetic tree based on 16S rRNA sequences, showing the relationship between the isolates and their relatives of the order Deinococcales. Bootstrap values (>70%) are shown. Truepera radiovictrix RQ-24T (DQ022076) was used as an outgroup. Bar, 0.02 substitutions per nucleotide position.
Trial for the Treatment of Extensively Drug-Resistant Gram-negative Bacilli (OVERCOME)
ClinicalTrials.gov study NCT01597973. IPD Sharing: Not stated. Countries: 7. Publications: 1.
New Strategies for Assessment of the Persistence of Viable Bacilli in Latent and Active Tuberculosis
ClinicalTrials.gov study NCT05621343. IPD Sharing: Not stated. Countries: 1. Publications: 1.
Gram-negative Bacilli and MRSA Screening in ICU in China
ClinicalTrials.gov study NCT04310722. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Different Dosing Strategies of Colistin in Multidrug-Resistant Gram-Negative Bacilli Infections
ClinicalTrials.gov study NCT06843668. IPD Sharing: NO. Countries: 1. Publications: 2.
Efficacy of a Probiotic or Fecal Microbiota Transplantation (FMT) on the Eradication of Rectal Multidrug-resistant Gram-negative Bacilli (MDR-GNB) Carriage (PROFTMDECOL)
ClinicalTrials.gov study NCT04431934. IPD Sharing: UNDECIDED. Countries: 1. Publications: 26.
Seven Versus 14 Days of Antibiotic Therapy for Multidrug-resistant Gram-negative Bacilli Infections
ClinicalTrials.gov study NCT05210387. IPD Sharing: NO. Countries: 1. Publications: 2.
Multidrug Resistant Gram-negative Bacilli Colonization and Infection in Burn
ClinicalTrials.gov study NCT02653157. IPD Sharing: Not stated. Countries: 1. Publications: 15.
Duration of Antibiotics for the Treatment of Gram-negative Bacilli Bacteremia
ClinicalTrials.gov study NCT01737320. IPD Sharing: Not stated. Countries: 2. Publications: 1.
Fig. 3 in A report of 38 unrecorded bacterial species in Korea within the classes Bacilli and Deinococci isolated from various sources
Fig. 3. Neighbor-joining phylogenetic tree based on 16S rRNA sequences, showing the relationship between the isolates and their relatives of the order Lactobacillales. Bootstrap values (>70%) are shown. Escherichia coli DSM 30083T (X801725) was used as an outgroup. Bar, 0.05 substitutions per nucleotide position.
Fluorescent in situ hybridization of Mycobacterium tuberculosis rRNA species for analysis of ribosomal synthesis as a marker of bacterial growth of individual bacilli in distinct lesional microenvironments of lung granulomas from C3HeB/FeJ mice
Open the record for dataset details and reuse information.
RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli
GEO Series GSE62506. Bos taurus. 78 samples. Type: Expression profiling by high throughput sequencing.
Natural mutations in the sensor kinase of the PhoPR two-component regulatory system modulate virulence of ancestor-like tuberculosis bacilli
GEO Series GSE229680. Mycobacterium tuberculosis; Mycobacterium canetti. 12 samples. Type: Expression profiling by high throughput sequencing.
Data from: Evolution of smooth tubercle bacilli PE and PE_PGRS genes: evidence for a prominent role of recombination and imprint of positive selection
Background: PE and PE_PGRS are two mycobateria-restricted multigene families encoding membrane associated and secreted proteins that have expanded mainly in the pathogenic species, notably the Mycobacterium tuberculosis complex (MTBC). Several lines of evidence attribute to PE and PE_PGRS genes critical roles in mycobacterial pathogenicity. To get more insight into the nature of these genes, we sought to address their evolutionary trajectories in the group of smooth tubercle bacilli (STB), the putative ancestor of the clonal MTBC. Methodology/Principal Findings: By focussing on six polymorphic STB PE/PE_PGRS genes, we demonstrate significant incongruence among single gene genealogies and detect strong signals of recombination using various approaches. Coalescent-based estimation of population recombination and mutation rates (ρ and θ, respectively) indicates that the two mechanisms are of roughly equal importance in generating diversity (ρ/θ = 1.457), a finding in a marked contrast to house keeping genes (HKG) whose evolution is chiefly brought about by mutation (ρ/θ = 0.012). In comparison to HKG, we found 15 times higher mean rate of nonsynonymous substitutions, with strong evidence of positive selection acting on PE_PGRS62 (dN/dS = 1.42), a gene that has previously been shown to be essential for mycobacterial survival in macrophages and granulomas. Imprint of positive selection operating on specific amino acid residues or along branches of PE_PGRS62 phylogenetic tree was further demonstrated using maximum likelihood- and covarion-based approaches, respectively. Strikingly, PE_PGR62 proved highly conserved in present-day MTBC strains. Conclusions/Significance: Overall the data indicate that, in STB, PE/PE_PGRS genes have undergone a strong diversification process that is speeded up by recombination, with evidence of positive selection. The finding that positive selection involved an essential PE_PGRS gene whose sequence appears to be driven to fixation in present-day MTBC strains lends further support to the critical role of PE/PE_PGRS genes in the evolution of mycobacterial pathogenicity.
Development and Evaluation of Rapid Bacterial Species Identification for Acid-Fast Bacilli Smear Using Image Analysis AI
ClinicalTrials.gov study NCT06519032. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Empiric Antibiotic Therapy for Ventilator-acquired Pneumonia With Gram-negative Bacilli in Intensive Care
ClinicalTrials.gov study NCT02127528. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Clinical Impact of Fluoroquinolone Resistance in Bacteremia Caused by Gram-Negative Bacilli of Urinary Tract Origin
ClinicalTrials.gov study NCT00414362. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.