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128 results for “Beta vulgaris”
The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris): Recombination and re-shuffling leads to a high structural variability
<p>Here we provide supplementary data for our study of non-autonomous Cassandra terminal-repeat retrotransposons in miniature (TRIMs) in sugar beet and related genomes.</p> <p>Cassandra sequences are distributed across the plant kingdom and share a unique feature: conserved 5S rDNA promoter motifs within their long terminal repeats (LTRs). This dataset contains two multiple sequence alignments and a sequence list of tandemly-arranged (TA) Cassandra sequences in FASTA format. Alignments cover LTR and internal regions of all Amaranthaceae Cassandra (Ama-Cassandra) from our study. This includes Cassandra full-length sequences from <em>B. vulgaris</em> (Ama_Cassandra_Beet_full-length) and <em>C. quinoa</em> (Ama_Cassandra_Quinoa_full-length). Sequence names include information on host plant, subfamily classification, localisation (scaffold), start and stop position, a Lab-unique TE identifier and sequence orientation. For the tandemly-arranged Cassandra sequences from sugar beet, we provide a sequence list of twelve sequences (Ama_Cassandra_TA_Beet_list). Here, sequence names refer to TA copy number, host, localisation (scaffold), start and stop position, a Lab-unique TE identifier and sequence orientation.</p> <p>All sequences were identified in the recent genome assemblys of <em>B. vulgaris</em> (RefBeet1.2; Dohm <em>et al</em>. 2014) and <em>C. quinoa</em> (ASM168347v1; Jarvis <em>et al</em>., 2017).</p>
Hiding in the heterochromatin: Endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris)
<p>Here we provide supplementary data for our study of endogenous pararetroviruses in the sugar beet genome (beetEPRVs).</p> <p>Our genome-wide screen showed the presence of three beetEPRVs families in the genome of sugar beet (<em>Beta vulgaris</em>). This dataset contains the consensus sequence for each beetEPRV family (Data S1) and the underlying multiple sequence alignments of individual, genomic beetEPRV copies (Data S2-S5). All data are provided in FASTA format. Sequence names include information on the analysed sugar beet assembly (EL10.1; genebank accession SAMN07736104; Funk <em>et al.</em>, 2018), chromosomal position (chromosome identifier; start and stop position), and sequence orientation (forward = plus; reverse = minus).</p>
Beta vulgaris W357B genome
<p>Beta vulgaris W357B genome assembly </p>
Beta vulgaris L. subsp. vulgaris (BR0000011879893)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. vulgaris (BR0000011880226)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011880219)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011879923)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011880080)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. vulgaris (BR0000012128167)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. vulgaris (BR0000011879954)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. vulgaris (BR0000011879299)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000014457463)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011880189)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. vulgaris (BR0000011879381)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011879831)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011879510)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011879596)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000010436530)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011880196)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Beta vulgaris L. subsp. maritima (L.) Arcang. (BR0000011880066)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
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