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5 results for “Biocuration”
International Society for Biocuration 2021 Survey results
<p>The ISB Equity, Diversity, and Inclusion Subcommittee surveyed members and non-members of the International Society for Biocuration to better understand the community and identify ways in which the ISB could better serve our community. These are the results of the 2021 survey.</p> <p> </p>
Enhanced Kinase Dictionaries associated with KinDER: A Biocuration Tool for Extracting Kinase Knowledge from Biomedical Literature
<p>This zip file contains Kinase dictionaries used for annotating documents with KinDER described in the following paper: </p> <p>Dopp, Daniel, Adam Morrone, and Indika Kahanda. "KinDER: A Biocuration Tool for Extracting Kinase Knowledge from Biomedical Literature." <em>Proceedings of the BioCreative VI Workshop</em>. 2017.</p>
Biocuration 2023 Conference Booklet
A description of organizers, sponsors, speakers, and the schedule of the Biocuration 2023 Conference
Biocuration - mapping resources and needs - Underlying Data
<p>A variety of teams and individuals are involved in biocuration worldwide. However, they may not self-identify as biocurators <em>per se</em>, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. The lack of a clear, up-to-date profile of biocuration creates challenges for organisations like ELIXIR, the ISB and GOBLET to systematically support biocurators and for biocurators themselves to develop their own careers. Therefore, the ELIXIR Training Platform launched an Implementation Study in order to i) identify communities of biocurators, ii) map the type of curation work being done, iii) assess biocuration training, and iv) draw a picture of biocuration career development. To achieve the goals of the study we carried out a global survey about the nature of biocuration work, the tools and resources that are used, training that has been received and additional training needs. To examine these topics in more detail we ran workshop-based discussions at ISB Biocuration Conference<strong> </strong>2019 and the ELIXIR All Hands Meeting 2019. We also had guided conversations with selected people from the EMBL-European Bioinformatics Institute.</p> <p>The following files represent the underlying data for this study:</p> <ul> <li> <p>Pilot survey questions.docx (questionnaire sent to staff of Wellcome Genome Campus)</p> </li> <li> <p>Questions to guide conversations with biocurators.docx (conversation guide outlines the type of questions to be asked)</p> </li> <li> <p>Global survey questions.docx (globally disseminated questionnaire revised on the basis of the pilot survey)</p> </li> <li> <p>Themed summary of the responses given in the guided conversations – deidentified.docx (de-identified outcomes of the guided conversations)</p> <ul> <li> <p>Information that may lead to the identification of respondents has been redacted.</p> </li> </ul> </li> <li> <p>Global_survey_deidentified.xlsx (de-identified responses to the global survey)</p> <ul> <li> <p>This file includes de-identified responses to the survey questions. Responses that may lead to the identification of respondents have been redacted. Free text responses to questions 6, 14 and 15 have been categorised into tasks, topics and skills, respectively. </p> </li> </ul> </li> <li> <p>Bar graphs of global survey.xlsx (quantitative responses to multiple choice questions in the global survey. For some questions, respondents could choose more than one option)</p> </li> <li> <p>Tools and resources.xlsx (Tools and resources used for biocuration work and listed by the respondents of the global survey)</p> </li> <li> <p>Biocuration training course list.xlsx (formal training courses listed by respondents of the global survey)</p> </li> </ul> <p> </p>
International Society for Biocuration 2020 Survey results
<p>During the past three years, the ISB Executive Committee sent out a survey to members and non-members to identify ways in which the ISB could better serve our community. These are the results of the 2020 survey.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.