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25 results for “Biotic filtering”
Data and scripts for: Idiosyncratic responses to biotic and environmental filters in wood-inhabiting fungal communities
<p>These files include the data, the scripts, and the pipeline for bioinformatic analyses for reproducing the results presented in the manuscript "<em>Idiosyncratic responses to biotic and environmental filters in wood-inhabiting fungal communities</em>".</p> <p>Description of the files can be found from the README.docx file.</p>
Environmental vs. biotic filtering: what if species traits contribute to both?
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Biotic filtering by species' interactions constrains food-web variability across spatial and abiotic gradients
<p>Despite intensive research on species dissimilarity patterns across communities (i.e. beta-diversity), we still know little about their implications for variation in food-web structures. Our analyses of 50 lake and 48 forest soil communities show that, while species dissimilarity depends on environmental and spatial gradients, these effects are only weakly propagated to the networks. Moreover, our results show that species and food-web dissimilarities are consistently correlated, but that much of the variation in food-web structure across spatial, environmental, and species gradients remains unexplained. Novel food-web assembly models demonstrate the importance of biotic filtering during community assembly by (1) the availability of resources, and (2) limiting similarity in species' interactions to avoid strong niche overlap and thus competitive exclusion. This reveals a strong signature of biotic filtering processes during local community assembly, which constrains the variability in structural food-web patterns across local communities despite substantial turnover in species composition.</p>
Do large-scale associations in birds imply biotic interactions or environmental filtering?
<p><strong>Aim</strong>: There has been a wide interest in the effect of biotic interactions on species' occurrences and abundances at large spatial scales, coupled with a vast development of the statistical methods to study them. Still, the evidence whether the effects of within-trophic level biotic interactions (e.g. competition and heterospecific attraction) are discernible beyond local scales remains inconsistent. Here, we present a novel hypothesis-testing framework based on joint dynamic species distribution models (JDSDMs) and functional trait similarity to dissect between environmental filtering and biotic interactions. </p> <p><strong>Location</strong>: France and Finland. </p> <p><strong>Taxon</strong>: Birds. </p> <p><strong>Methods</strong>: We estimated species-to-species associations within a trophic level, independent of the main environmental variables (mean temperature and total precipitation) for common species at large spatial scale with joint dynamic species distribution models (VAST). We created hypotheses based on species' functionality (morphological and/or diet dissimilarity) and habitat preferences about the sign and strength of the pairwise spatio-temporal associations to estimate the extent to which they result from biotic interactions (competition, heterospecific attraction) and/or environmental filtering. </p> <p><strong>Results</strong>: Spatio-temporal associations were mostly positive (80%), followed by random (15%), and only 5% were negative. Negative spatio-temporal associations in different communities were due to a few species when they existed. The relationship between spatio-temporal association and functional dissimilarity among species was negative, which fulfills the predictions of both environmental filtering and heterospecific attraction. </p> <p><strong>Main conclusions: </strong>We showed that processes leading to species aggregation (mixture between environmental filtering and heterospecific attraction) seem to dominate assembly rules, and we did not find evidence for competition. Altogether, hypothesis-testing framework based on joint dynamic species distribution models and functional trait similarity is beneficial in ecological interpretation of species-to-species associations from the long-term large-scale data. </p>
Data from: The importance of biotic filtering on boreal conifer recruitment at alpine treeline
<p>Treeline, the ecotone where forest transitions to alpine or tundra ecosystems, is considered the thermal limit to tree growth and survival. Despite temperature increases across mountainous areas and high latitudes globally, there has been no ubiquitous change in treeline position. The process of range expansion must initially depend on increased recruitment at, or beyond current range limits and recruitment limitations have been hypothesized as a mechanism for the variable response of treeline position to climate warming.<b> </b>We conducted a unique series of observational and experimental studies to quantify early-life stage constraints, from seed production to seedling establishment, on black spruce (<i>Picea mariana</i>) and tamarack (<i>Larix laricina</i>) recruitment at a model alpine treeline in Newfoundland, Canada.<b> </b>We found recruitment at treeline to be simultaneously seed and establishment limited. The treeline population produced fewer seeds than the forest population and black spruce seeds produced at treeline were less viable. Tamarack was more seed limited than black spruce where seed viability was low regardless of altitudinal position.<b> </b>Post-dispersal seed predation greatly constrained recruitment across the altitudinal gradient; however, black spruce seeds experienced the lowest levels of invertebrate seed predation on the lichen mat at treeline. If seeds were not consumed, individuals at treeline were establishment limited where germination and seedling establishment was both less abundant and delayed on lichen substrate. Our study highlights the need for multiple factors to align temporally for significant recruitment at treeline to occur.</p>
Small mammal granivory as a biotic filter for tree establishment beyond elevation range boundaries
<p>Trees often experience migration lags in their response to rapidly changing climate. Preferential granivory by nocturnal small mammals has the potential to create lags by reducing germination success beyond range edges. To determine how granivory may limit establishment of trees beyond their range margins, we conducted a seed choice experiment which offered seeds of five regionally dominant tree species to small mammals within distinct forest communities across a 400m elevational gradient on four mountains in the northeastern United States. Multinomial logistic mixed effects models were used to (a) quantify seed preference of each species across the elevational gradient and (b) assess relationships between seed preference and abiotic variables. A separate seed dispersal experiment was used to compare the probability of seed consumption versus seed caching. The low-elevation temperate tree species <em>Fagus</em> <em>grandifolia</em> and <em>Acer</em> <em>saccharum</em> had an equally high probability of granivory within and beyond their range margins (~40% and ~20%, respectively). Generally, seed preference was positively correlated with seed mass and nutrient content regardless of elevation. Our seed dispersal experiment revealed that seeds were 3× more likely to be consumed than cached, suggesting that small mammals can potentially decrease germination success. Overall, temperate tree species with either high seed mass or nutritional value may experience substantial granivory beyond their range margin, partially explaining the observed lag between tree dispersal and climate change. Thus, granivory is vital to consider when modeling future tree species distributions under various climate change scenarios.</p>
Biotic filtering by species’ interactions constrains food-web variability across spatial and abiotic gradients
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Data from: The importance of biotic filtering on boreal conifer recruitment at alpine treeline
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Data from: Experimental assessment of biotic and abiotic filters driving community composition
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Do large-scale associations in birds imply biotic interactions or environmental filtering?
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Small mammal granivory as a biotic filter for tree establishment beyond elevation range boundaries
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Data from: Trait-mediated community assembly: distinguishing the signatures of biotic and abiotic filters
Conflicting hypotheses predict how traits mediate species establishment and community assembly. Traits of newly establishing individuals are predicted to converge, or be more similar to the resident, preexisting community, when the biotic or abiotic environment favors a single best phenotype, but are predicted to diverge when trait differences reduce competitive interactions. We tested these competing hypotheses using transplant seedlings in an old-field environment, and assessed the contribution of inter- and intra-specific transplant trait variation to community-level patterns. Using a soil moisture gradient and resident plant removals, we determined when traits of newly-establishing plants converge or diverge from the resident community by calculating community weighted mean traits for transplant and resident communities. We saw evidence of environmentally- and competitively-driven trait shifts that resulted in both trait convergence and divergence from the resident community, whose traits reflect the combined effects of both drivers. Leaf dry matter content (LDMC) of transplants diverged in the presence of competition, whereas plant height and stem-specific density (SSD) showed the opposite pattern, converging with the resident community in their presence. Specific leaf area (SLA) shifted with competition but did not reflect resident community SLA. All transplant traits were influenced by soil moisture, often in an interaction with competition, indicating that the strength of convergence or divergence is contingent on the abiotic environment. Intraspecific differences in transplant traits among treatments were evident in three of four traits; intraspecific height and SLA trends mirrored transplant community-level trends, whereas intraspecific shifts in SSD were distinct from community-level trends. Our study shows competition between plant species may cause traits of newly establishing plants to converge with the resident community, as frequently as it selects for trait divergence. These opposing effects of competition suggest that it plays a pervasive role in both intraspecific and species-level trait differences among communities.
The role of environmental vs. biotic filtering in the structure of European ant communities: a matter of trait type and spatial scale
<p>Functional trait-based approaches are increasingly used for studying the processes underlying community assembly. The relative influence of different assembly rules might depend on the spatial scale of analysis, the environmental context and the type of functional traits considered. By using a functional trait-based approach, we aim to disentangle the relative role of environmental filtering and interspecific competition on the structure of European ant communities according to the spatial scale and the type of trait considered. We used a large database on ant species composition that encompasses 361 ant communities distributed across the five biogeographic regions of Europe; these communities were composed of 155 ant species, which were characterized by 6 functional traits. We then analysed the relationship between functional divergence and co-occurrence between species pairs across different spatial scales (European, biogeographic region and local) and considering different types of traits (ecological tolerance and niche traits). Three different patterns emerged: negative, positive and non-significant regression coefficients suggest that environmental filtering, competition and neutrality are at work, respectively. We found that environmental filtering is important for structuring European ant communities at large spatial scales, particularly at the scale of Europe and most biogeographic regions. Competition could play a certain role at intermediate spatial scales where temperatures are more favourable for ant productivity (i.e. the Mediterranean region), while neutrality might be especially relevant in spatially discontinuous regions (i.e. the Alpine region). We found that no ecological mechanism (environmental filtering or competition) prevails at the local scale. The type of trait is especially important when looking for different assembly rules, and multi-trait grouping works well for traits associated with environmental responses (tolerance traits), but not for traits related to resource exploitation (niche traits). The spatial scale of analysis, the environmental context and the chosen traits merit special attention in trait-based analyses of community assembly mechanisms.</p>
Data from: Disentangling biotic interactions, environmental filters, and dispersal limitation as drivers of species co-occurrence
A key focus in ecology is to search for community assembly rules. Here we compare two community modelling frameworks that integrate a combination of environmental and spatial data to identify positive and negative species associations from presence-absence matrices, and incorporate an additional comparison using joint species distribution models (JSDM). The frameworks use a dichotomous logic tree that distinguishes dispersal limitation, environmental requirements, and interspecific interactions as causes of segregated or aggregated species pairs. The first framework is based on a classical null model analysis complemented by tests of spatial arrangement and environmental characteristics of the sites occupied by the members of each species pair (Classic framework). The second framework, (SDM framework) implemented here for the first time, builds on the application of environmentally-constrained null models (or JSDMs) to partial out the influence of the environment, and includes an analysis of the geographical configuration of species ranges to account for dispersal effects. We applied these approaches to examine plot-level species co-occurrence in plant communities sampled along a wide elevation gradient in the Swiss Alps. According to the frameworks, the majority of species pairs were randomly associated, and most of the non-random positive and negative species associations could be attributed to environmental filtering and/or dispersal limitation. These patterns were partly detected also with JSDM. Biotic interactions were detected more frequently in the SDM framework, and by JSDM, than in the Classic framework. All approaches detected species aggregation more often than segregation, perhaps reflecting the important role of facilitation in stressful high-elevation environments. Differences between the frameworks may reflect the explicit incorporation of elevational segregation in the SDM framework and the sensitivity of JSDM to the environmental data. Nevertheless, all methods have the potential to reveal general patterns of species co-occurrence for different taxa, spatial scales, and environmental conditions.
Data from: Biotic-drivers of seedling establishment in Neotropical savannas: selective granivory and seedling herbivory by leaf-cutter ants as an ecological filter
Herbivory has been shown to have prominent top-down effects on vegetation in Paleotropical savannas, where consumers of early stages of life history act as demographic bottlenecks. Such impact has been largely ignored in Neotropical savannas, however, despite insect consumption being linked to reduced recruitment of woody species. We hypothesize that Atta leaf-cutter ants – the prevalent herbivores in the Neotropics – alter the establishment of woody plant seedlings in the Brazilian Cerrado by reducing seed availability and seedling survival. We also hypothesize that the demographic effects will be species-specific. To test these hypotheses, we experimentally (i) compared seed removal in areas with and without Atta foraging and (ii) compared the survivorship of seedlings exposed to or protected from Atta foraging. Both experiments were performed with the same common Cerrado species which allowed us to evaluate the potential net effects of consumers at the population and community levels. Overall seed removal rates in sites with Atta foraging were greater than those where ants were absent (59.2% and 39.2% of seeds removed, respectively). There were differences in removal for 10 of the 12 tested species, with per species removal 1.1- to 3.8-fold greater in areas with Atta foraging. On transplanted plants, 45% of seedlings exposed to Atta were attacked, resulting in a survival 7.6% lower than that of protected seedlings. Seedling survival was 11.8–31.5% lower in five species, with the largest differences in survival between treatments during the dry season. Taken together, these results support the hypothesis that consumers can lead to demographic bottlenecks in Neotropical savanna plant species, with effects varying among life-history stages and between species. Synthesis. Granivory by ants has been linked to reduced seedling recruitment of woody species in the Brazilian Cerrado. Our results show that leaf-cutter ants may largely limit early seedling establishment of woody species by reducing seed availability and seedling survival with differential species-specific effects. Atta ants may therefore be acting as an ecological filter, which coupled with potential selectivity in foraging on reproductive life-history stages, may ultimately influence the relative abundance of different species and hence the structure and composition of Cerrado vegetation.
Data from: Spatial variation in the biotic and abiotic filters of oyster recruitment: Implications for restoration
<p>Attempts to restore marine ecosystems are increasing, but the success of projects remains variable. For marine invertebrates, the establishment of self-sustaining populations requires a larval supply as well as conditions that permit recruitment.</p> <p>Abiotic and biotic conditions that determine recruitment can vary across environmental gradients and have opposing or reinforcing effects. We assessed how predation and tidal inundation influence recruitment of the reef-forming oyster, Saccostrea glomerata, at 15 sites, 5 estuaries and 8 degrees of latitude in eastern Australia.</p> <p>Oysters recruited to all 15 sites, but their density displayed spatially variable effects of tidal inundation and caging. Effects of tidal inundation and caging were weakest at the two lower-latitude estuaries where recruitment was low overall, average temperature and turbidity were high and dissolved oxygen low.</p> <p>At higher-latitude estuaries, where abiotic conditions were more favourable for recruitment, recruit density displayed tidal elevation gradients that were dependent on caging and time. Initially, recruit density decreased with tidal inundation (and exposure to finfish predators), in the uncaged but not the caged treatment. However, over time the elevation gradient disappeared, and recruitment and survival of oysters was greater in caged than uncaged treatments irrespective of elevation.</p> <p>Synthesis and applications: Our results suggest that both abiotic (i.e. temperature, turbidity and dissolved oxygen) and biotic (i.e. predation) factors can negatively influence oyster recruitment and, hence, restoration success. Consequently, oyster reef restoration projects should be planned to prioritise sites with low turbidity, high dissolved oxygen and low predation unless these stressors can be mitigated. Restoration projects that are designed with knowledge of local stressors are more likely to be successful.</p>
Disentangling the role of environmental filtering and biotic resistance on alien invasions in a reservoir area
<p>Data from: Disentangling the role of environmental filtering and biotic resistance on alien invasions in a reservoir area</p>
Data from: Biotic-drivers of seedling establishment in Neotropical savannas: selective granivory and seedling herbivory by leaf-cutter ants as an ecological filter
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Data from: Spatial variation in the biotic and abiotic filters of oyster recruitment: Implications for restoration
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Data from: Trait-mediated community assembly: distinguishing the signatures of biotic and abiotic filters
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