Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
136
datasets available to search
ShareScore release 0.9.0
Dataset results
136 results for “CITE-seq”
PBMC CITE-seq, 10x Multiome, and TEA-seq multiomic datasets from Swanson, et al. eLife (2021).
<p>Assembled multiomic datasets from Swanson, et al. <em>Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq</em>. eLife 2021;10:e63632 DOI: <a href="https://doi.org/10.7554/eLife.63632">10.7554/eLife.63632</a> </p> <p>Datasets were assembled from the GEO repository: <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE158013">GSE158013</a> </p> <p>Data are provided as SeuratObjects stored in separate .rds files using the saveRDS() function in R.</p> <p>MuData files for use with Python tools (muon, scanpy, scvitools, et al.) will be added soon.</p> <p>Contact Lucas Graybuck (lucasg at alleninstitute dot org) if there are problems with these datasets.</p>
10K-Cell Subset of PBMC CITE-Seq Dataset for CITEViz
<p>This repository contains an example CITE-Seq data (10K peripheral blood mononuclear cells) to test the CITEViz program. The CITEViz preprint is available <a href="https://www.biorxiv.org/content/10.1101/2022.05.15.491411v1">here</a>, and the documentation website is located <a href="https://maxsonbraunlab.github.io/CITEViz/">here</a>. The original data underlying this article are available in GEO (Gene Expression Omnibus) at <a href="https://www.ncbi.nlm.nih.gov/geo/">https://www.ncbi.nlm.nih.gov/geo/</a>, and can be accessed with GSE164378. </p>
PBMC CITE-seq reference
<p>This PBMC CITE-seq reference object was constructed using Seurat v5.</p>
CITE-Seq analysis of total PBMC pre- and post-PfSPZ vaccination in the IMRAS trial
GEO Series GSE191332. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
scRNAseq of isolated fetal liver erythroid progenitor cell subpopulations, and CITE-seq of mouse fetal liver erythroid progenitors
GEO Series GSE188287. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
CITE-seq analysis of mouse LSK cells
GEO Series GSE145491. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
CITE-seq of Neuropilin 2-expressing CD4+ T cells
GEO Series GSE225955. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing; Other.
Neoadjuvant CD40 agonism remodels the tumor immune microenvironment in locally advanced esophageal/gastroesophageal junction cancer [CITE-seq]
GEO Series GSE244746. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
Gene expression profile at the single cell level of splenic LCMV-specific B cells in acute versus chronic LCMV infection [scRNA-seq, CITE-seq]
GEO Series GSE225933. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Cohesin-mediated chromatin remodeling controls the differentiation and function of conventional dendritic cells (CITE-Seq of SMC3 KO splenic cDCs +/- activation)
GEO Series GSE312960. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing; Other.
Metabolic adaptation pilots the differentiation of human hematopoietic cells (scRNA-Seq and CITE-Seq)
GEO Series GSE243005. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Other.
Expanding the CITE-seq tool-kit: Detection of proteins, transcriptomes, clonotypes and CRISPR perturbations with multiplexing, in a single assay
GEO Series GSE126310. Homo sapiens; Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
Tumor-specific CD4 T cells instruct monocyte differentiation in pancreatic ductal adenocarcinoma [CITE-seq]
GEO Series GSE233067. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing; Other.
Suppression of IL-1β promotes beneficial accumulation of fibroblast-like cells in atherosclerotic plaques in clonal hematopoiesis [CITE-seq]
GEO Series GSE248289. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
Multimodal human thymic profiling reveals trajectories and cellular milieu for T agonist selection [CITE-seq]
GEO Series GSE207204. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
Ontogeny and transcriptional regulation of Thetis cells [CITE-Seq]
GEO Series GSE316673. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Effect of depletion of LRIG1 on CD8+ tumor infiltrating T cells [CITE-Seq]
GEO Series GSE245840. Mus musculus. 4 samples. Type: Other.
Deconvolution of the tumor-educated platelet transcriptome reveals activated platelet and inflammatory cell transcript signatures [CITE-seq]
GEO Series GSE271073. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Uncovering human yolk sac-derived innate lymphoid-biased multipotent progenitors prior to hematopoietic stem cell formation (CITE-Seq)
GEO Series GSE268141. Homo sapiens. 1 samples. Type: Other.
Comprehensive Benchmarking of CITE-seq versus DOGMA-seq Single Cell Multimodal Omics
GEO Series GSE200417. Homo sapiens. 15 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.