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139
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ShareScore release 0.9.0
Dataset results
139 results for “CLIP-seq”
Data for Galaxy CLIP-Seq Training Material
<p>The eCLIP data provided here is a subset of the eCLIP data of RBFOX2 from a study published by Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). The dataset contains the first biological replicate of RBFOX2 CLIP-seq and the input control experiment (*fastq files). The data was changed and downsampled to reduce data processing time, thus the datasets does not correspond to the original data pulled from Nostrand et al. (2016, http://dx.doi.org/10.1038/nmeth.3810). Also included is a text file (.txt) encompassing the chromosome sizes of hg19 and hg38 obtained from UCSC (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes, http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes) and a genome annotation for hg19 (.gtf) taken from Ensembl (http://ftp.ensemblorg.ebi.ac.uk/pub/release-74/gtf/homo_sapiens/) and for hg38 taken from the Galaxy libraries (https://usegalaxy.eu/library/list#folders/F30cab321d898d2fb/datasets/9ba790aa79c9cf23). The data is used for a galaxy training course about CLIP-Seq data analysis. </p>
Peakhood: individual site context extraction for CLIP-seq peak regions
<p>Peakhood Supplementary Data Archive, see content.txt for file content descriptions.</p>
YTHDF1 CLIP-seq in WT and DHX36-KO HEK293T cells
GEO Series GSE264498. Homo sapiens. 4 samples. Type: Other.
Let-7 represses Nr6a1 and a mid-gestation developmental program in adult fibroblasts [CLIP-Seq]
GEO Series GSE45828. Mus musculus. 2 samples. Type: Other.
RNA binding protein PRRC2B mediates translation of specific proteins and regulates cell cycle progression [PAR_Clip-seq]
GEO Series GSE220057. Homo sapiens. 4 samples. Type: Other.
Transcription factor trapping by RNA in gene regulatory elements (CLIP-Seq)
GEO Series GSE68196. Mus musculus. 4 samples. Type: Other.
Argonaute CLIP defines a deregulated miR-122 bound transcriptome that correlates with patient survival in human liver cancer (Human CLIP-Seq)
GEO Series GSE97056. Homo sapiens. 28 samples. Type: Other.
Argonaute CLIP defines a deregulated miR-122 bound transcriptome that correlates with patient survival in human liver cancer (Mouse CLIP-Seq)
GEO Series GSE97058. Mus musculus. 9 samples. Type: Other.
The PURB-HOTAIR complex regulates p53-dependent promoter-specific transcriptional activation [CLIP-Seq]
GEO Series GSE295618. Homo sapiens. 1 samples. Type: Other.
Identification of RNAs bound to PUM2 in Norad+/+ and Norad-/- brains [CLIP-seq]
GEO Series GSE121684. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Characterization of gRNA-Dependent and gRNA-Independent Off-Target Binding Sites of PspCas13b and RfxCas13d in Mammalian Cells [CLIP-seq]
GEO Series GSE291436. Homo sapiens. 47 samples. Type: Other.
DHX9 suppresses spurious RNA processing defects originating from the Alu invasion of the human genome [XL8 DHX9 FLASH CLIP-seq]
GEO Series GSE89751. Mus musculus. 4 samples. Type: Other.
The RNA-binding protein Sfpq regulates long neuronal genes in transcriptional elongation [SFPQ_CLIP-seq]
GEO Series GSE96081. Mus musculus. 3 samples. Type: Other.
Identifying DAP5 mRNA translation and direct-binding targets in human embryonic stem cells (hESCs) using Ribo-seq and CLIP-seq.
GEO Series GSE193115. Homo sapiens. 25 samples. Type: Expression profiling by high throughput sequencing.
CLIP-seq analysis of WT and Gag chimera HIV-1 virions 1
GEO Series GSE281422. Homo sapiens. 49 samples. Type: Other.
CLIP-seq analysis of WT and Gag chimera HIV-1 virions 3
GEO Series GSE281424. Homo sapiens. 20 samples. Type: Other.
A dual role for the RNA helicase DHX34 in NMD and pre-mRNA splicing and its role in familial AML/MDS (CLIP-Seq)
GEO Series GSE204982. Homo sapiens. 9 samples. Type: Other.
DDX3X regulation of global translation is impaired by medulloblastoma-associated mutations [CLIP-Seq]
GEO Series GSE59094. Homo sapiens. 5 samples. Type: Other.
Control of immediate early gene expression by CPEB4-mediated mRNA degradation [CLIP-seq]
GEO Series GSE188693. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing; Other.
K8 CLIP-Seq in KSHV reactivated BCBL-1 cells
GEO Series GSE104711. Homo sapiens; Human gammaherpesvirus 8. 4 samples. Type: Other.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.