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815
datasets available to search
ShareScore release 0.9.0
Dataset results
815 results for “CUT&RUN”
CUT&RUN_myProtein
<p>CUT&RUN samples for my proteins 1-3 after degradation of protein 2; includes negative and positive control and information on sequencing identifiers </p>
Datasets for the CUT&RUN data analysis
<p>The datasets are used for the Galaxy CUT&RUN training material. CUT&RUN data was generated by <a href="https://doi.org/10.1186/s13059-019-1802-4">Zhu et al. 2019</a> and down sampled to speed up the training. ChIP-seq data comes from an experiment for GATA1 by <a href="https://doi.org/10.1038/ng.3793">Canver et al. 2017</a>.</p>
CUT&RUN_X
<p>CUT&RUN data of human cancer cell line.</p>
Quantification of RNAseq and CUT&RUN from MeCP2 adult knockout hippocampus
Open the record for dataset details and reuse information.
Epigenomic profiling of TASOR in Hela cells using ChIP, CUT&RUN and CUT&Tag
<p>Example bigwig coverage tracks illustrating TASOR-regulated H3K9me3 and TASOR genome binding.</p> <p>Mapped to hg38.</p> <p>For detailed methods, see linked preprint.</p>
Beta cell-derived cholecystokinin drives obesity-associated pancreatic adenocarcinoma development [CUT&RUN]
GEO Series GSE280947. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
CUT&RUN in cadmium resistant breast cancer MDA-MB-231 cells
GEO Series GSE222587. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cut & Run-seq analysis for transcription factors overexpression in GI-MEN cells
GEO Series GSE214793. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
SUMOylated Etv1 establishes tumor-initiating cells during mammary oncogenesis [CUT&RUN]
GEO Series GSE272057. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Receptor Interacting Protein 140 (Nrip1) Controls Cardiac Fuel Metabolism and Function [CUT&RUN]
GEO Series GSE205315. Mus musculus. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma [CUT&RUN]
GEO Series GSE270196. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Profiling Sox4 binding sites and histone post-translational modifications in adult hepatocytes (CUT&RUN II)
GEO Series GSE221224. Mus musculus. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcription factor dynamics, oscillation, and functions in human enteroendocrine cell differentiation [Cut&Run]
GEO Series GSE238272. Homo sapiens. 12 samples. Type: Other.
The transcription factor NFIL3 drives innate lymphoid cell specification from lymphoid progenitors [CUT&RUN]
GEO Series GSE291321. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome organization regulates nuclear pore complex formation and promotes differentiation during Drosophila oogenesis [CUT&RUN]
GEO Series GSE250350. Drosophila melanogaster. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
MEF2C CUT&RUN in PV and SST interneurons.
GEO Series GSE165018. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Jarid2 promotes temporal progression of retinal progenitors via repression of Foxp1 [Jarid2 cKO CUT&RUN]
GEO Series GSE222955. Mus musculus. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide profiling of transcription factor-DNA binding interactions in Candida albicans: a comprehensive CUT&RUN method and data analysis workflow
GEO Series GSE193803. Candida albicans. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Targeting SUMOylation triggers interferon-beta-dependent activation of patient and allogenic Natural Killer cells in preclinical models of Acute Myeloid Leukemia [CUT&RUN]
GEO Series GSE285061. Homo sapiens. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
MARK2/MARK3 kinases are catalytic co-dependencies of YAP/TAZ in human cancer [CUT&RUN]
GEO Series GSE241897. Homo sapiens. 12 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.