Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
17
datasets available to search
ShareScore release 0.9.0
Dataset results
17 results for “Calonectria”
Potential distribution of invasive boxwood blight pathogen (Calonectria pseudonaviculata) as predicted by process-based and correlative models
<p>R project, R scripts, and data files for reproducing most of the analyses presented in a climatic suitability study for boxwood blight. The README. md file describes how to run the scripts and provides details on data inputs.</p> <p><strong>Abstract: </strong>Boxwood blight caused by <em>Cps</em> is an emerging disease that has had devastating impacts on <em>Buxus</em> spp. in the horticultural sector, landscapes, and native ecosystems. In this study, we produced a process-based climatic suitability model in the CLIMEX program and combined outputs of four different correlative modeling algorithms to generate an ensemble correlative model. All models were fit and validated using a presence record dataset comprised of <em>Cps</em> detections across its entire known invaded range. Evaluations of model performance provided validation of good model fit for all models. A consensus map of CLIMEX and ensemble correlative model predictions indicated that not-yet-invaded areas in eastern and southern Europe and in the southeastern, midwestern, and Pacific coast regions of North America are climatically suitable for <em>Cps</em> establishment. Most regions of the world where<em> Buxus</em> and its congeners are native are also at risk of establishment. These findings provide the first insights into <em>Cps</em> global invasion threat, suggesting that this invasive pathogen has the potential to significantly expand its range.</p>
Supplementary material 7 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of cmdA gene sequences : Data type: molecular data
Supplementary material 3 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Prolate group based on maximum likelihood (ML) analysis of cmdA gene sequences : Data type: molecular data
Supplementary material 6 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of his3 gene sequences : Data type: molecular data
Supplementary material 2 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Prolate group based on maximum likelihood (ML) analysis of his3 gene sequences : Data type: molecular data
Supplementary material 1 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Prolate group based on maximum likelihood (ML) analysis of tef1 gene sequences : Data type: molecular data
Supplementary material 5 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of tef1 gene sequences : Data type: molecular data
Supplementary material 4 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Prolate group based on maximum likelihood (ML) analysis of tub2 gene sequences : Data type: molecular data
Supplementary material 8 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of tub2 gene sequences : Data type: molecular data
Supplementary material 1 from: Pham NQ, Marincowitz S, Chen SF, Rodas CA, Wingfield MJ (2022) Soil-borne Calonectria (Hypocreales, Nectriaceae) associated with Eucalyptus plantations in Colombia. MycoKeys 94: 17-35. https://doi.org/10.3897/mycokeys.94.96301
Phylogenetic tree based on maximum likelihood (ML) analysis of individual gene region (ACT, CMDA, HIS3, TUB2, TEF1 and RBP2)
The Genome sequences of Calonectria ilicicola (anamorph Cylindrocladium parasiticum) causing Cylindrocladium black rot of peanut and red crown rot of soybean
<p>The fungus <em>Calonectria ilicicola</em> (anamorph <em>Cylindrocladium parasiticum</em>) is an important plant pathogen causing Cylindrocladium black rot (CBR) on peanut and Red crown rot (RCR) on soybean. CBR infection of peanuts cause symptoms such as chlorosis of leaves, blackening of taproots, and wilting, while RCR infection of soybeans lead to root and interveinal necrosis of soybean. In the present study, we sequenced the genome of four CBR-related<em> Ca. ilicicola</em> strains and three RCR-related<em> Ca. ilicicola</em> strains. The draft genome of <em>Ca. ilicicola</em>, ranged from 68.63 Mb to 70.35 Mb in genome size, containing 18536 to 19361 protein-coding genes. The described genome sequences will provide insights into factors that contribute to pathogenicity toward peanut and soybean and will be useful for future research in population genomics and molecular diagnostic marker development to quickly detect this pathogen.</p>
Supplementary material 1 from: Sanchez-Gonzalez EI, Farias Soares TdP, Galafassi Zarpelon T, Valverde Zauza EA, Gonçalves Mafia R, Alves Ferreira M (2022) Two new species of Calonectria (Hypocreales, Nectriaceae) causing Eucalyptus leaf blight in Brazil. MycoKeys 91: 169-197. https://doi.org/10.3897/mycokeys.91.84896
Figures S1–S6
Figure 2 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 2 - Phylogenetic tree of Calonectria species in the Sphaero-Naviculate group based on maximum likelihood (ML) analysis of combined DNA dataset of tef1, his3, cmdA and tub2 gene sequences. ML and MP (maximum parsimony) bootstrap values (ML/MP) are shown above branches, with bootstrap values below 60 % marked with an *, and absent analysis values are marked with -. Isolates representing ex-type material are marked with "T", isolates highlighted in bold were sequenced in this study and novel species were covered in orange. The tree was rooted to Ca. pauciramosa (CMW 5683 and CMW 30823).
Figure 4 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 4 - Calonectria montana. a–c Macroconidiophores d–f Sphaeropedunculate vesicles g–h Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides i–j Macroconidia Scale bars: a–c = 20 μm; d–j = 10 μm.
Figure 3 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 3 - Calonectria lichi. a–c Macroconidiophore d–f Clavate vesicles g–i Conidiogenous apparatus with conidiophore branches and doliiform to reniform phialides j–k Macroconidia Scale bars: a–c = 50 μm; d–f = 5 μm; g–k = 10 μm.
Figure 1 from: Liu QL, Chen SF (2017) Two novel species of Calonectria isolated from soil in a natural forest in China. MycoKeys 26: 25-60. https://doi.org/10.3897/mycokeys.26.14688
Figure 1 - Phylogenetic tree of Calonectria species in the Prolate group based on maximum likelihood (ML) analysis of combined DNA dataset of tef1, his3, cmdA and tub2 gene sequences. ML and MP (maximum parsimony) bootstrap values (ML/MP) are shown above branches, with bootstrap values below 60 % marked with an *, and absent analysis values are marked with -. Isolates representing ex-type material are marked with "T", isolates highlighted in bold were sequenced in this study and novel species were covered in blue. The tree was rooted to Ca. hongkongensis (CBS 114711 and CBS 114828).
Supplementary material 2 from: Pham NQ, Marincowitz S, Chen SF, Rodas CA, Wingfield MJ (2022) Soil-borne Calonectria (Hypocreales, Nectriaceae) associated with Eucalyptus plantations in Colombia. MycoKeys 94: 17-35. https://doi.org/10.3897/mycokeys.94.96301
Collection details and GenBank accessions of isolates included in the phylogenetic analyses
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.