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11 results for “Canis lupus chanco”
Supplementary material 4 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Median-joining networks of Himalayan wolf and related wolf and dog clades : Explanation note: Median-joining networks of Himalayan wolf and related wolf and dog clades. Golden jackal and Ethiopian wolf haplotypes are shown for comparison. Circle size and branches are proportional to sampled haplotype frequency and number of nucleotide mutation steps among haplotypes, respectively. Branch numbers refer to mutation steps separating individual haplotypes. Scat samples sequenced in this study are represented by arrows falling within the Himalayan wolf (HWF) and Indian feral dog (IDH) haplotypes. Nomenclature for the African wolf follows Koepfli et al. (2015).
Supplementary material 2 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Genebank sequences analysed in this study : Explanation note: GenBank accession numbers for sequences analyzed in this study.
Supplementary material 1 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Best model selection for Bayesian analysis : Explanation note: Estimating the best model of molecular substitution inferred using Log Bayes Factors (LBF) from Bayesian posterior distributions in Mr Bayes. Rate variation for tested models - gamma distributed rate variation across sites (gamma); gamma distributed with proportion of invariable sites (invgamma); rate variation with proportion of invariable sites (propinv); equal rate variation across sites (equal).
Supplementary material 3 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Aligned CR sequences of selected samples of wolves and dogs from GenBank, with the obtained scat samples : Explanation note: Aligned CR sequences of selected samples of wolves, dogs from GenBank, with scat samples obtained in this study. Numbers refer to mtDNA nucleotide positions referenced with respect to the complete mtDNA genome of gray wolf (GenBank Accession No. KF857179). Scat sequences D2137, D2138, D2139 and D2143 match each other differs from known Himalayan wolf haplotypes by at least two substitutions, while D2140 completely matches domestic dog and a wolf sequence in GenBank.
Fig. 4 in Comparative analysis of peripheral blood reveals transcriptomic adaptations to extreme environments on the Qinghai-Tibetan Plateau in the gray wolf (Canis lupus chanco)
Fig. 4 Reconstructed mitochondrial DNA tree of the worldwide distributed wolves. The numbers at each node are the Bayesian posterior probabilities (right) and ML bootstrap propor- tions (left)
Fig. 3 in Comparative analysis of peripheral blood reveals transcriptomic adaptations to extreme environments on the Qinghai-Tibetan Plateau in the gray wolf (Canis lupus chanco)
Fig. 3 Scatterplot of enriched KEGG pathways for DEGs between the Tibetan and lowland wolves. The enrichment factor is the ratio of the DEG number to the total gene number in the pathway. The dot size and color represent the gene number and the range of the p value respectively
Fig. 1 in Comparative analysis of peripheral blood reveals transcriptomic adaptations to extreme environments on the Qinghai-Tibetan Plateau in the gray wolf (Canis lupus chanco)
Fig. 1 Gene expression profiles of blood in Tibetan and lowland wolves. a Boxplot of the log transformed FPKM expression values across eight wolf blood samples. FPKM: fragments per kilobase of exon per million fragments. The solid horizontal line represents the median, and the box
Supplementary material 5 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Blast report of sample D2140 : Explanation note: Blast search result for D2140 scat sequence.
Figure 3 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Figure 3 - Phylogenetic trees constructed using 229 bp of aligned CR sequence data. The values at nodes correspond to A bootstrap support > 50% in maximum likelihood (ML) and maximum parsimony (MP) analyses; and B Bayesian posterior probability > 0.50. Scat samples sequenced in this study are highlighted in bold. Four samples (D2137, D2138, D2139 and D2143) represented a novel haplotype HWF within the Himalayan wolf clade, while a fifth sample (D2140) matched with existing domestic dog haplotypes.
Figure 1 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Figure 1 - A Himalayan wolf photographed in Upper Mustang of Annapurna Conservation Area, Nepal (29.17356°N, 84.13422°E; datum WGS84, elevation 5,050 m) during May 2014.
Figure 2 from: Chetri M, Jhala YV, Jnawali SR, Subedi N, Dhakal M, Yumnam B (2016) Ancient Himalayan wolf (Canis lupus chanco) lineage in Upper Mustang of the Annapurna Conservation Area, Nepal. ZooKeys 582: 143-156. https://doi.org/10.3897/zookeys.582.5966
Figure 2 - Fecal sample and direct sighting locations of the Himalayan wolf in Upper Mustang of Annapurna Conservation Area, Nepal.
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