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2,028 results for “Capacity”
Summer water chemistry; sediment phosphorus fluxes and sorption capacity; sedimentation and sediment resuspension dynamics; water column thermal structure; and zooplankton, macroinvertebrate, and macrophyte communities in eight shallow lakes in northwest Iowa, USA (2018-2020)
The primary aim of this data product is to characterize change in water chemistry, sediment-water interactions, and biological communities in shallow, eutrophic lakes undergoing a fishery biomanipulation. We studied eight glacial lakes located in northwest Iowa, USA, from 2018 to 2020 during the summer season (May to September). A subset of these lakes (n = 4; Center, Five Island, North Twin, and Silver Lakes) were part of a fishery biomanipulation in which the Iowa Department of Natural Resources (IDNR) incentivized commercial harvest of common carp (Cyprinus carpio) and bigmouth buffalo (Ictiobus cyprinellus). Harvests occurred in Center and Five Island Lakes during 2018-2019 and in North Twin and Silver Lakes during 2019-2020. Between 73 and 373 kg fish biomass per ha were removed each year. The other study lakes (n = 4; Blue, South Twin, Storm, and Swan Lakes) remained unmanipulated during the study period. Over the course of the biomanipulation, we quantified a suite of physical, chemical, and biological parameters across the study lakes. High frequency aquatic sensors were used to measure water column thermal structure, dissolved oxygen concentrations, and algal pigments. Manual water chemistry sampling further quantified suspended solids, total phosphorus and nitrogen, soluble reactive phosphorus, nitrate, and water clarity. We measured flux rates of phosphorus between bottom sediments and the overlying water using ex situ sediment core incubations under both oxic and anoxic conditions. We further quantified sediment phosphorus sorption capacity using equilibrium phosphorus concentration assays. Tiered sediment traps were used to measure sedimentation rates as well as sediment resuspension in bottom waters. We also measured change in zooplankton, macroinvertebrate, and macrophyte community composition and abundance. These data will be used to better understand the mechanisms of internal phosphorus loading in shallow lakes and the ecosystem effects of fisherie
Resilience estimates of Amazon and Congo rainforests based on mean annual precipitation and root zone storage capacity
<p>Resilience refers to the capacity of the ecosystem to absorb perturbations and remain in its native stable state. Here, we quantified forest resilience of South American and African ecosystems using mean annual precipitation and root zone storage capacity (2000-2019). We adopted Hirota et al. (2011) methodology for calculating resilience using logistic regression. This logistic regression predicts the probability of forest (tree cover > 50%) as a function of the independent variable. The predicted resilience estimates range between 0 to 1, where 1 represents the highest probability of finding forest – interpreted as highly resilient forest ecosystems.</p> <p>For more information, check: <a href="https://onlinelibrary.wiley.com/doi/full/10.1111/gcb.16115">https://onlinelibrary.wiley.com/doi/full/10.1111/gcb.16115</a></p>
Capacity factor time series for solar and wind power on a 50 km^2 grid in Europe
<p>This spatio-temporal dataset contains capacity factors timeseries for locations on a grid with 50km edge length in Europe. The data is resolved in one hour timesteps and comprises the years 2000--2016. It has been generated using <a href="https://www.renewables.ninja">Renewables.ninja</a> and is based on MERRA-2 reanalysis data. For each of the ~2700 onshore location, it contains one time series for onshore wind turbines and five time series for PV installations with different orientations and tilts. PV time series exist for (1) installations on open fields, (2) installations on all possible rooftops, (3) south-facing and flat rooftops, (4) east- and west-facing rooftops, (5) north-facing rooftops. For each of the ~2800 offshore location there is one timeseries for offshore wind turbines.</p> <p>Two GeoTIFF files contain spatial information of onshore and offshore locations. For each of the three technologies -- onshore wind, offshore wind, and PV -- there is one NetCDF file determining the temporal dimension and containing the data. The GeoTIFF and NetCDF files are linked through unique IDs for all locations.</p> <p>This data serves as input data to euro-calliope, a model of the European electricity system.</p> <p>The following parameters have been used to generate the timeseries:</p> <pre><code>resolution-grid: 50 # [km^2] corresponding to MERRA resolution pv-performance-ratio: 0.9 hub-height: onshore: 105 # m, median hub height of V90/2000 in Europe between 2010 and 2018 offshore: 87 # m, median hub height of SWT-3.6-107 in Europe between 2010 and 2018 turbine: onshore: "vestas v90 2000" # most built between 2010 and 2018 in Europe offshore: "siemens swt 3.6 107" # most built between 2010 and 2018 in Europe</code></pre> <p>CHANGELOG:</p> <p>Version 3 (2022-05-18)</p> <p>* Update spatial scope to include Iceland and its offshore EEZ.<br> * Update temporal scope to include 2017 and 2018.</p> <p>Effect of increasing spatial scope is a slight change in the spatial position of the data points.</p> <p>Version 2 (2020-06-18)</p> <p>* Add time series for rooftop PV with different orientations.</p>
MOD-LSP: MODIS-Based Parameters for Variable Infiltration Capacity (VIC) Model over the Continental US, Mexico, and Southern Canada
<p>The MOD-LSP project contains MODIS-based land and surface (soil and vegetation) parameters for the Variable Infiltration Capacity (VIC) model (Liang et al., 1994), release 5.0 and later (Hamman et al., 2018). The MOD-LSP spatial domain covers the continental United States, Mexico, and southern Canada; the associated domain files can be found in the <a href="https://zenodo.org/record/2564019">PITRI archive</a> (Bohn et al. 2018). This spatial domain and 0.625° (6 km) grid resolution are compatible with the gridded daily meteorological forcings of Livneh et al. (2015) ("L2015" hereafter) (http://ciresgroups.colorado.edu/livneh/data/daily-observational-hydrometeorology-data-set-north-american-extent), which can be disaggregated to hourly time step via the MetSim tool (Bennett et al. 2018) using the <a href="https://zenodo.org/record/2564019">aforementioned PITRI domain files</a> (Bohn et al. 2018).</p> <p>These parameters have two main purposes: (1) to improve upon previous widely-used parameters over the region (e.g., L2015) with updated, higher-resolution land cover maps and spatially explicit observations of surface properties; and (2) to expand from a single parameter set corresponding to one point in time to a series of parameter sets that account for temporal variability at seasonal to decadal scales.</p> <p>A detailed description of methods, the data sources and purposes of different VIC parameter sets within MOD-LSP, and how to use them with VIC, can be found in the MOD-LSP User Guide.pdf, included here. The scripts that were used to create the MOD-LSP parameters are archived on <a href="https://zenodo.org/record/3364149">Zenodo and GitHub</a> (Bohn 2019).</p> <p>If you wish to present or publish results that use these parameter sets, please cite the following paper:</p> <p>Bohn, T. J., and E. R. Vivoni, 2019b: MOD-LSP, MODIS-based land surface properties for assessing land cover variability and change over North America. Sci. Data, 6, 144, doi: 10.1038/s41597-019-0150-2.</p> <p>In addition, if you use the domain files associated with the PITRI precipitation disaggregation to accompany the MOD-LSP parameter files in VIC simulations, please cite the following paper:</p> <p>Bohn, T. J., K. M. Whitney, G. Mascaro, and E. R. Vivoni, 2019: A deterministic approach for approximating the diurnal cycle of precipitation for use in large-scale hydrological modeling. J. Hydrometeorol., 20, 297–317, doi:10.1175/JHM-D-18-0203.1.</p> <p>Contents:</p> <ul> <li>MOD-LSP User Guide v1.0.pdf - Explains how parameters were generated and how to set up the files for input in VIC simulations.</li> <li>global_param.template - Template for global_parameter file, which lists the locations of the other input files and sets various simulation options. The template contains placeholders for some filenames and simulation options, which must be replaced with real values by the user.</li> <li>params.$DOMAIN.L2015.nc - VIC-5 compliant NetCDF parameter files with values taken from the L2015 project for domain $DOMAIN (which is one of "CONUS_MX" or "USMX").</li> <li>params.CONUS_MX.MOD_IGBP.mode.2000_2016.nc - VIC-5 compliant NetCDF parameter file over the CONUS_MX domain, with land cover fractions taken from the MODIS MCD12Q1.006 product and an annual cycle of land surface properties (LAI, Fcanopy, albedo) derived from the climatological mean of MODIS observations over the period 2000-2016.</li> <li>params.USMX.NLCD_INEGI.$LCID.2000_2016.nc - VIC-5 compliant NetCDF parameter file over the USMX domain, with land cover fractions taken from the NLCD_INEGI dataset, from year = $LCID, and an annual cycle of land surface properties (LAI, Fcanopy, albedo) derived from the climatological mean of MODIS observations over the period 2000-2016.</li> <li>params.USMX.NLCD_INEGI.$LCID.$YYYY_$YYYY.nc - VIC-5 compliant NetCDF parameter file over the USMX domain, with land cover fractions taken from the NLCD_INEGI dataset, from year = $LCID, and an annual cycle of land surface properties (LAI, Fcanopy, albedo) derived from the MODIS observations from a single year $YYYY.</li> <li>veg_hist.$DOMAIN.$LCTYPE.$LCID.2000_2016.nc - timeseries of monthly land surface properties (LAI, Fcanopy, albedo) from MODIS observations spanning years 2000-2016, over domain $DOMAIN, aggregated over land cover classification $LCTYPE from year $LCID.</li> </ul>
Dataset for "Study of Rapid Capacity Fade in Prismatic Li-ion Cells with Flexible Packaging"
<p>Prismatic lithium-ion batteries (LIBs) are considered promising electric energy sources in electromobility applications due to their cell to pack density. However, their sensitivity to external and internal influences, and reduced durability lead to inflation risk and potential explosions throughout their lifecycle. These critical processes are strongly influenced by the inner construction of the cell, especially concerning the coating and mechanical fixation. This study subjects a commercially available prismatic LIB cell to comprehensive, correlative analysis employing various imaging techniques. The inner structure of the entire cell is visualized non-destructively by X-ray computed tomography (CT), enabling the identification of critical design flaws prior to electrochemical cycling. Electrochemical cycling simulates the battery lifecycle, and the cell is subsequently disassembled in the fully charged state. The usage of the inert-gas transfer system allowed the preparation of Broad Ion Beam (BIB) electrodes cross-sections in a fully native state and for the first time to observe the tearing of graphite particles due to over-lithiation. Established region labeling system allowed to use CT and scanning electron microscopy (SEM) correlatively to identify critical regions. After 100 cycles, a 40% capacity loss was observed and event diagram describing deagradation mechanisms, related both to the cell design and to the processes occurring at high load, was created.</p>
Examining the Capacity of Text Mining and Software Metrics in Vulnerability Prediction [dataset]
<p>This dataset contains the extension of a publicly available dataset that was published initially by Ferenc et al. in their paper:</p> <p><em>“Ferenc, R.; Hegedus, P.; Gyimesi, P.; Antal, G.; Bán, D.; Gyimóthy, T. Challenging machine learning algorithms in predicting vulnerable javascript functions. 2019 IEEE/ACM 7th InternationalWorkshop on Realizing Artificial Intelligence Synergies in Software Engineering (RAISE). IEEE, 2019, pp. 8–14.”</em></p> <p>The dataset contained software metrics for source code functions written in JavaScript (JS) programming language. Each function was labeled as vulnerable or clean. The authors gathered vulnerabilities from publicly available vulnerability databases.</p> <p>In our paper entitled: “<strong>Examining the Capacity of Text Mining and Software Metrics in Vulnerability Prediction</strong>” and cited as:</p> <p><em>“Kalouptsoglou I, Siavvas M, Kehagias D, Chatzigeorgiou A, Ampatzoglou A. Examining the Capacity of Text Mining and Software Metrics in Vulnerability Prediction. Entropy. 2022; 24(5):651. <a href="https://doi.org/10.3390/e24050651">https://doi.org/10.3390/e24050651</a>”</em></p> <p>, we presented an extended version of the dataset by extracting textual features for the labeled JS functions. In particular, we got the dataset provided by Ferenc et al. in CSV format and then we gathered all the GitHub URLs of the dataset's functions (i.e., methods). Using these URLs, we collected the source code of the corresponding JS files from GitHub. Subsequently, by utilizing the start and end line information for every function, we cut off the code of the functions. Each function was then tokenized to construct a list of tokens per function.</p> <p>To extract text features, we used a text mining technique called sequences of tokens. As a result, we created a repository with all methods' source code, the token sequences of each method, and their labels. To boost the generalizability of type-specific tokens, all comments were eliminated, as well as all integers and strings, which were replaced with two unique IDs.</p> <p>The dataset contains 12,106 JavaScript functions, from which 1,493 are considered vulnerable.</p> <p>This dataset was created and utilized during the Vulnerability Prediction Task of the Horizon2020 IoTAC Project as training and evaluation data for the construction of vulnerability prediction models. The dataset is provided in the csv format. Each row of the csv file has the following parts:</p> <ul> <li>Label: Flag with values ‘1’ for vulnerable and ‘0’ for non-vulnerable methods</li> <li>Name: The name of the JavaScript method</li> <li>Longname: The longname of the JavaScript method</li> <li>Path: The path of the file of the method in the repository</li> <li>Full_repo_path: The GitHub URL of the file of the method</li> <li>TokenX: Each next row corresponds to each token included in the method</li> </ul>
List of capacity building resources for combating climate mis/disinformation created by EU-funded projects
<p>This dataset is the result of collaborative work for Deliverable 1.3 (WP1; T1.3) of the AGORA project. It compiles resources from projects funded by the European Commission under the last two Framework Programmes (Horizon 2020 and Horizon Europe) and focused on combating climate change misinformation and disinformation. The resources identified and analysed include training materials, guidelines and interactive digital platforms designed for various target groups.</p>
List of capacity building resources for climate change adaptation created by EU-funded projects
<p>This dataset is the result of collaborative work for Deliverable 1.3 (WP1; T1.3) of the AGORA project. It compiles resources from projects funded by the European Commission under the last two Framework Programmes (Horizon 2020 and Horizon Europe) and focused on climate change adaptation. The resources identified and analysed include training materials, guidelines and interactive digital platforms designed for various target groups.</p>
Carbon Sequestration Capacity Groups
<p>Marginal Lands (MLs) as detected by MaiL Project were classified in Carbon Sequestration Capacity (CSC) Groups. The methodology based on multicriteria GIS analysis with data including tree species maps (Brus et al., 2011), land cover maps (Malinowski, et al., 2020) and Aboveground Biomass maps (Spawn, Sullivan, Lark, & Gibbs, 2020). The aim was to estimate potential suitable species for afforestation for each Marginal Land as well species’ Above Ground Biomass Carbon (AGBC) and proceed to classification into CSC groups.<br> In order to estimate CSC for MLs and classify in CSC groups, it is crucial to estimate potential suitable species for afforestation and their Aboveground Biomass Carbon. The MLs as calculated on Task 2.3 of MAIL project is the basemap, where the most frequent species from neighbor forested areas, both dominant 1 and 2 species, and species’ Aboveground Biomass Carbon values are assigned. Dominant 1 and 2 species of neighbor forested areas are adapted to the ecological and climatological conditions and therefore are considered to be the most suitable for afforestation projects. Through classification into CSC groups, we get a better understanding regarding the relative interconnections between groups and each one's potential trend.The frequency distribution of the formula’s results is presented in a histogram. Classification into CSC groups was done by manually defining classes ranges, in such a way so each class to cover approximately the same area across Europe, with the exception of higher and lower sequestration groups, Group A and Group E respectively. Group A represents higher sequestration MLs, covering 5% of Europe’s total MLs and on the other side Group E represents lower sequestration MLs covering 31% of Europe’s MLs.</p>
GERONTE H2020 project - GERDAT005 - Intrinsic capacity evaluation and intervention protocol
<p><strong>The present document is a dataset generated as part of Deliverable D1.1. of the GERONTE project, which has received funding from the European Union’s Horizon 2020 Programme under Grant Agreement N°945218. It aims to provide the geriatric oncology professional community with a protocol for the evaluation of intrinsic capacity and frailty, with subsequent interventions aimed at optimizing health status and support for older patients with multimorbidity and cancer.</strong></p> <p>GERONTE is a 5-year research and innovation project (April 2021 to Mars 2026) funded by the European Union within the framework of the H2020 Research and Innovation programme, in response to the health societal challenge topic SC1-BHC-24-2020 “Healthcare interventions for the management of the elderly multimorbid patient”. The overall aim of GERONTE is to improve quality of life - defined as well-being on three levels: global health status, physical functioning and social functioning- for older multimorbid patients, while reducing overall costs of care. To this end, GERONTE will co-design, test, and prepare for deployment an innovative cost-effective patient-centred holistic health management system, hereafter referred to as the GERONTE intervention. GERONTE intervention will rely on an ICT based application for real-time collection and integration of standardised clinical and home patient-reported data. GERONTE intervention will be demonstrated in the context of care of multimorbid patients having cancer as a dominant morbidity, and be adaptable to any other combination of morbidities.</p> <p>An important component of Geronte is to take account of intrinsic capacity. Most older patients who are diagnosed with cancer also suffer from other illnesses and impairments that could affect their prognosis, priorities and ability to tolerate and benefit from treatment. For tailored oncologic decision making, it is essential to obtain a complete overview of the patient’s health status. This dataset contains the protocol for evaluation intrinsic capacity and potential interventions for impairments or vulnerabilities that were identified in this evaluation. It is going to be used in the assessment and management of older patients with multimorbidity and cancer, within the GERONTE care pathway.</p>
Coefficients for Tight Logarithmic Approximations and Bounds for Generic Capacity Integrals
<p>This is a supplementary dataset for the publication:</p> <p>I. M. Tanash and T. Riihonen, "Tight Logarithmic Approximations and Bounds for Generic Capacity Integrals and Their Applications to Statistical Analysis of Wireless Systems," in <em>IEEE Transactions on Communications</em>, 2022, doi: 10.1109/TCOMM.2022.3198435.</p> <p>The dataset contains the sets of optimized coefficients for the novel minimax approximations of the Nakagami and lognormal capacity integrals in terms of absolute error. The proposed approximations have the form of a weighted sum of logarithmic functions. The optimized coefficients are found for a wide range of the corresponding fading parameters, namely m for the Nakagami capacity integral and σ (standard deviation) for the lognormal capacity integral. Please note that the optimized coefficients in the provided dataset for the lognormal capacity integral are calculated for σdB (standard deviation in decibels) so σ=0.1 log_e(10) σdB in Eq. 5.</p> <p>The Matlab function (func_extract_coef.m) extracts the required set of optimal coefficients from the provided dataset according to the selected capacity integral, the parameter's value, and the number of terms. See help func_extract_coef for more information.</p> <p>The Matlab script (general_any_func) implements the theory presented in the corresponding journal paper: More specifically, it implements solving Eq. 22 to calculate the optimized coefficients of Eq. 7 for the Nakagami capacity integral. The code also provides general comments on how to generalize it to obtain the optimized coefficients of any communication system in terms of absolute error. Number of supplementary Matlab functions (general_any_func, func_abs_gen_any_func, calc_d_gen, calc_Cappr_gen, calc_d_gen_derivative, calc_Cappr_gen_derivative, Gauss_Laguerre, and peakseek) are provided herein and are used in the main Matlab script.</p> <p>A Matlab script (Example.m) is also provided as an example to illustrate the use of the provided Matlab function (func_extract_coef.m) in extracting the required coefficients from the dataset, to calculate and plot the corresponding absolute error which is shown by figure Example.jpg.</p>
DS3_DITOs_Capacity_Building_Tools_Results-events-database
<p>This csv file is the dataset of events that were completed by the DITOs consortium during the 3 year H2020 Coordination and Support Action 1/6/16-31/5/19</p> <p>It contains the following fields:</p> <p>Partner - The consortium partner responsible for organising the event</p> <p>Title - The name of the event</p> <p>Name of event as described in the DoA - The type of the event as listed in the DoA, or the word 'additional' if the event was not envisaged in the DoA</p> <p>Page link - the link to the together science.eu page that held the event detail</p> <p>Status - the status of the event (planned, completed or cancelled)</p> <p>Date - the start date of the event in YYY-MM-DD format</p> <p>Time - the start time of the event in 24HH:MM format</p> <p>End date - the end date of the event in YYY-MM-DD format</p> <p>End time - the end time of the event in 24HH:MM format</p> <p>The event type - conference, exhibition, gaming competition, online, travelling bus or workshop</p> <p>Audience number - an estimate (from the hosting partner) of the number of attendees</p> <p>%Female - an estimate (from the hosting partner) of the percentage of attendees</p> <p>Workpackage - WP1-6 - the work package from the DoA relevant to that event</p> <p>Partner org name and facilitator - the partner to contact and name(s) of facilitators</p> <p>Lower age bracket - an estimate of the age of the youngest attendee</p> <p>Upper age bracket - an estimate of the age of the oldest attendee</p> <p>URLs - any associated websites for outputs or publicity</p> <p>Event ID - a unique event identifier of the format XXXX_YYYYMMDD(z) where XXXX is partner identifier (ECSA, eutema, UCL, UPD, RBINS, Tekiu, UNIGE, WS, meritum, KI, MP - as defined in the Grant agreement), YYYYMMDD is the start date of the event and z is an optional suffix (a through z) used if the partner ran more than one event on that date</p> <p>Location - the address where the event took place</p> <p>Reporting period - the Grant agreement reporting period the event relates to</p> <p>Phase - the DoA phase the event relates to</p> <p>NGO - A list of any NGOs involved in co-hosting / contributing to the event</p> <p>DIY and local communities - A list of any DIY and local communities s involved in co-hosting / contributing to the event</p> <p>Local and national government - A list of any government bodies involved in co-hosting / contributing to the event</p> <p>Industry, company and start-ups - A list of any industry/start-ups involved in co-hosting / contributing to the event</p> <p>Other - A list of any other organisations involved in co-hosting / contributing to the event</p> <p>Online resources - URLs for any related resources</p> <p>Geolocation, latitude and longitude - coordinates of the event location</p>
PAsCAL WP6 Pilot 1 High-Capacity Bus Operations
<p>This dataset was collected within the context of the PAsCAL research project between June 2021 and September 2021 at the E-Bus Competence Centre premises in Livange, Luxembourg. Subject of the pilot was a Wizard of Oz experiment, which consisted of a modified high-capacity bus vehicle to simulate a Level-5 automated vehicle to the passengers, although the bus was operated and driven by a human driver, which was not visible to the participants.</p> <p>The participants experienced several malfunctions of the bus and were offered a Human-Machine-Interface (HMI), which connected them to a traffic control centre for troubleshooting. The purpose of the pilot was to evaluate whether available HMIs are able to bridge the gap to human driver support to passengers. Some of the participants were blind or partially sighted to also observe the adequacy of the solution on vulnerable travellers.</p> <p>In order to analyse the answers given to the questions, it is recommended to consult also the "PAsCAL WP6 Pilots Surveys" dataset, which contains all questions and possible answers.</p>
Predicted Beaver Dam Building Capacity in the Minneapolis-St. Paul Metro Area
The Beaver Restoration Assessment Tool (BRAT) (MacFarlane et al., 2015) is a predictive model that integrates hydrology, topography, vegetation, and land use data to predict existing and historical beaver dam building capacity within a watershed. The model was run on the HUC8 Mississippi River Twin Cities Watershed (07010206) in March 2025. The output displayed is a shapefile of the Conservation Restoration Model, which includes existing and historical dam building capacity as well as restoration opportunities.
Electron shuttling capacity and greenhouse gas production of soils for three high-elevation wetlands at Niwot Ridge, 2024.
High-elevation wetlands are important indicators of how mountain ecosystems may respond to global climate change. These wetlands also act as locations of disproportionate biogeochemical processing on the landscape, but they remain relatively understudied compared to lowland wetlands. This study aimed to characterize redox-active organic matter (RAOM) reduction, a known key control on carbon cycling in high-latitude peatland ecosystems, to better understand biogeochemical cycling in high elevation wetlands and carbon greenhouse gas production at Niwot Ridge LTER. Soils were collected from three different types of wetlands, a subalpine wetland, a periglacial solifluction lobe, and an alpine wet meadow. Samples were incubated at a common temperature in the laboratory to measure RAOM reduction, carbon dioxide production, and methane production over 63-d. This dataset reports the electron shuttling values, a measure of RAOM reduction, and the greenhouse gas production over the incubation period.
Modelled root zone storage capacities Hubbard Brook WS5
Modelled root zone storage capacities for the Hubbard Brook Experimental Forest - Watershed 5. Root zone storage capacities were derived based on a simple water balance based model (Nijzink et al. 2016). Long term equilibrium root zone storage capacities yearly root zone storage capacities were determined.
Modelled root zone storage capacities HJ Andrews
Modelled root zone storage capacities for the HJ Andrews Experimental Forest - Watershed 1. Root zone storage capacities were derived based on a simple water balance based model (Nijzink et al. 2016). Long term equilibrium root zone storage capacities yearly root zone storage capacities were determined.
Modelled root zone storage capacities Hubbard Brook
Modelled root zone storage capacities for the Hubbard Brook Forest - Watershed 2. Root zone storage capacities were derived based on a simple water balance based model (Nijzink et al. 2016). Long term equilibrium root zone storage capacities yearly root zone storage capacities were determined.
Global rooting zone water storage capacity and rooting depth estimates
<p>Global rooting zone water storage capacity (<em>S</em><sub>CWDX80</sub>, mm) and rooting depth (<em>z</em><sub>CWDX80</sub>, mm) estimates from Stocker et al., (2023). </p> <p>Additional global maps for rooting zone water storage capacity and rooting depth are provided and may be used as vegetation model forcing. These are created using the code from <code>whc_forcing_map.Rmd</code> , available <a href="https://github.com/geco-bern/mct/blob/master/whc_forcing_map.Rmd">here</a> (Zenodo entry: https://doi.org/10.5281/zenodo.7429129). The following steps were taken for creating these maps:</p> <ol> <li>The relationship between vegetation height and rooting depth was fitted using quantile regression (lower 10%) and data from Tumber-Davila et al. (2023). This yields a lower-bound rooting depth.</li> <li>A global map of vegetation height (Simard et al., 2011) was used for predicting the lower-bound rooting depth distribution globally.</li> <li>The lower-bound rooting depth was converted into a lower-bound root zone water storage capacity following methods as described in Stocker et al. (2023).</li> <li>The maximum of the lower-bound rooting depth and the inferred rooting depth (<em>z</em><sub>CWDX80</sub>) from Stocker et al., (2023) was determined for each grid cell. This is what's in the file <code>zroot_cwdx80_forcing.nc</code>. Anaologusly for <code>cwdx80_forcing.nc</code>.</li> </ol> <p>Please cite published paper:</p> <div> <div>Stocker, B. D., Tumber-Dávila, S. J., Konings, A. G., Anderson, M. C., Hain, C., and Jackson, R. B.: Global patterns of water storage in the rooting zones of vegetation, Nat. Geosci., 1–7, <a href="https://doi.org/10.1038/s41561-023-01125-2">https://doi.org/10.1038/s41561-023-01125-2</a>, 2023.</div> </div> <p> </p>
Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities
<p>Simulation output files for 'Modeling robust COVID-19 intensive care unit occupancy thresholds for imposing mitigation to prevent exceeding capacities'.</p> <p>Simulating COVID-19 transmission and hospital burden to assess at which intensive care unit (ICU) occupancies mitigation, that reduces transmission, needs to be triggered to avoid exceeding ICU capacity limits, using the city of Chicago, Illinois as an example.</p> <p>Manuscript is under review for scientific publication, (see <a href="https://www.medrxiv.org/content/10.1101/2021.06.27.21259530v1">preprint on medRxiv</a>) and scripts are available from the GitHub repository at https://github.com/numalariamodeling/ICUtrigger_covid_chicago_paper_2021. </p> <p>Simulation output files uploaded per scenario including projected COVIID-19 transmission and burden trajectories for Chicago city for March 2020 to May 2021 per day.</p> <p>Simulation scenarios:</p> <p><reopening % above ICU capacity>_<delay after reaching ICU threshold>_<%mitigation>_<common simulation name> i.e. `50perc_1daysdelay_pr6_triggeredrollback_reopen`</p> <ul> <li>`emodl` file <ul> <li>required file for COVID-19 transmission model in the <a href="https://docs.idmod.org/projects/cms/en/latest/index.html">Compartmental Modeling Software</a> (see <a href="https://github.com/numalariamodeling/ICUtrigger_covid_chicago_paper_2021">GitHub repository</a> for details)</li> </ul> </li> <li>sampled_parameters.csv <ul> <li>simulation input and scenario parameters, (nrow=4400, 400 unique parameter combinations * 11 scenario values)</li> </ul> </li> <li>rt_trajectoriescovidregion_11.csv <ul> <li>estimated reproductive numbers per trajectory for complete timeline per day</li> </ul> </li> <li>trajectoriesDat_region_11_traces.csv <ul> <li>filtered to include top 100 trajectories fitted to ICU data</li> </ul> </li> <li>trajectoriesDat_region_trimfut.csv <ul> <li>truncated to only include projections after September 1st 2020</li> </ul> </li> </ul> <p>The folder `mainfigures_csvs.zip` includes processed simulation output data for the publication figures.</p>
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.