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862 results for “Capillary”
Development of MeV TOF-SIMS capillary microprobe at the Ruđer Bošković Institute in Zagreb
<p>New Time-of-flight Secondary Ion Mass Spectrometry (TOF SIMS) setup using MeV heavy ions for the excitation is developed at the Ruđer Bošković Institute accelerator facility. To focus heavy MeV ions to micron dimensions, conical glass capillary is used instead of quadrupole magnetic lenses. The setup uses a continuous primary beam where START signal for TOF is obtained from the PIN diode placed behind the thin transmission sample. Results showing measured energy spectra for several primary heavy ions are presented and compared with theoretical simulations. . The first mass spectra obtained with the new setup using reflectron-type TOF analyzer are given together with the mass and spatial resolution values of the new setup. </p>
Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections - Supplementary videos
<p>We regard ROIs, regions of interest, from a human spleen specimen in single (four ROIs) and double (three ROIs) staining. The ROIs with the same number correspond to each other. Below we map references in manuscript (<strong>bold</strong>) to file names in this repository (<em>italics</em>).</p> <ul> <li>File <em>colour-deconvolution.png</em> – settings of colour deconvolution in Fiji for double staining.</li> <li>File <em>comments to videos.odt</em> – a commentary to S3[c,d] Video.</li> <li><strong>S1a,b Video to S3a,b Video</strong>: files <em>video_[1,2,3][a,b].mov</em> – sequence of section with single (a) and double (b) staining for ROI 1 to 3 in the main text.</li> <li><strong>S1c Video to S3c Video</strong>: files <em>video_[1,2,3]c.mov</em> – video of the reconstruction, single staining, special blood vessels highlighted.</li> <li><strong>S1d Video to S4d Video</strong>: files <em>video_[1,2,3]d.mov</em> – an overview video of the reconstruction, double staining.</li> <li><strong>S4 Video</strong>: file <em>video_4.mov</em> – quality control in virtual reality.</li> <li><strong>S1 Figure</strong>: a supplementary figure <em>fig_S1.tiff</em> and its caption <em>fig_S1_legend.odt</em></li> <li><strong>S2 Figure</strong>: a supplementary figure <em>fig_S2.tiff</em> and its caption <em>fig_S2_legend.odt</em></li> </ul> <p>This data corresponds to the publication "Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections" by B. S. Steiniger, C. Ulrich, M. Berthold, M. Guthe, and O. Lobachev, 2017.</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 9)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>GBCurvApprx_175_to_5200.zip<br> Single-grain-boundary-contour-point-resolved curvature estimation tracking data for time step 175 to 5200 with 1 time step resolution and all grains</p> <p>CurvatureEvolution.zip,<br> CurvatureEvolutionAverage.zip<br> TopologyTracer analysis capillary driving force evolution with 100 time step resolution based on the<br> GBContour* data --- not the GBCurvApprx* data.</p> <p>CurvatureEvolutionSuccessful.zip<br> TopologyTracer analysis matrix of segment-length-averaged capillary migration speed for the surviving<br> grains at 1 time step temporal resolution based on the GBCurvApprx* data</p> <p>CurvatureEvolutionUnsuccessful.zip<br> TopologyTracer analysis matrix of segment-length-averaged capillary migration speed for the false<br> positive sub-grains, see paper for details, based on the GBCurvApprx* data</p> <p>UnbiasedGrowthMeasures.zip<br> TopologyTracer analysis temporal evolution of long-range characterisation with the xi metric, see paper for details</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 7)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>Texture_Faces_450_to_5296.zip<br> Grain boundary network geometry and grain meta data tracking data for time step 450 to 5296 with 1 time step resolution</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 5)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>Texture_Faces_171_to_259.zip<br> Grain boundary network geometry and grain meta data tracking data for time step 171 to 259 with 1 time step resolution</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 3)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>Texture_Faces_50_to_99.zip<br> Grain boundary network geometry and grain meta data tracking data for time step 50 to 99 with 1 time step resolution</p> <p> </p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 2)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>Texture_Faces_1_to_49.zip<br> Grain boundary network geometry and grain meta data tracking data for time step 1 to 49 with 1 time step resolution</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 4)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>Texture_Faces_100_to_170.zip<br> Grain boundary network geometry and grain meta data tracking data for time step 100 to 170 with 1 time step resolution</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX3D)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>0Synthesis.zip --- Microstructure synthesis<br> -Container.raw 3D implicit x,y,z right-handed coordinate system ID field describing the microstructure IDs refer to<br> -Microstructure.uds and MicrostructureDiagnostics.uds meta data for the grains<br> -parameters.xml parameterization of microstructure synthesis<br> -Scripts and additional input referred to by parameters.xml</p> <p>1Coarsening.zip --- Simulation<br> -Container.raw 3D implicit x,y,z right-handed coordinate system ID field describing the microstructure IDs refer to<br> -Microstructure.uds meta data for the grains<br> -VoxelizedParameters.xml parameterization of coarsening simulation<br> -NrGrains&EnergyStatistics.dat descriptive stats simulation (Time step, Real time, number of grains, ---, grid size)<br> -Network.zip implicit 3d x,y,z unsigned int ID container detailing the microstructure</p> <p>Texture_Faces_1_to_1261.zip<br> Grain boundary network geometry and grain meta data tracking data</p> <p>Network.zip<br> Rendering images for evolution of the grain boundary network and volume properties</p> <p>2DataAnalysis --- Data analyses<br> -All other archive Matlab analysis scripts and TopologyTracer results<br> </p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 1)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>0Synthesis.zip --- Microstructure synthesis<br> -Container.raw 3D implicit x,y,z right-handed coordinate system ID field describing the microstructure IDs refer to<br> -Microstructure.uds and MicrostructureDiagnostics.uds meta data for the grains<br> -parameters.xml parameterization of microstructure synthesis<br> -Scripts and additional input referred to by parameters.xml</p> <p>1Coarsening.zip --- Simulation<br> -Container.raw 3D implicit x,y,z right-handed coordinate system ID field describing the microstructure IDs refer to<br> -Microstructure.uds meta data for the grains<br> -VoxelizedParameters.xml parameterization of coarsening simulation<br> -NrGrains&EnergyStatistics.dat descriptive stats simulation (Time step, Real time, number of grains, ---, grid size)<br> -Network.zip implicit 3d x,y,z unsigned int ID container detailing the microstructure</p> <p>1CoarseningTrackCurvature.zip<br> -Files of the re-run to the simulation along which capillary data were tracked on the fly in each time step</p> <p>GBContourPoints_100_to_5296.zip<br> -Grain boundary face network for time steps 100 to 5296 at 100 time step resolution</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 8)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>GBCurvApprx_1_to_174.zip<br> Single-grain-boundary-contour-point-resolved curvature estimation tracking data for time step 1 to 174 with 1 time step resolution and all grains</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 10)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>NetworkEvolutionPNG.zip<br> Rendered images of the evolving microstructure at very high resolution and reduced size FullHD</p> <p>PRX2DNetwork.gif and PRX2DNetwork.gifx<br> Video of the evolving microstructure and corresponding gif-x video generation file</p> <p>TrackingParallelRXEVO_Resolution_1.zip<br> TopologyTracer analysis of recrystallized volume fraction over time</p> <p>TrackingParallelSEE1002000.zip<br> TopologyTracer analysis of single-grain-resolved stored elastic energy driving forces segment length averaged</p> <p>TrackingParallelTrackingBK_Resolution_1.zip,<br> TrackingParallelTrackingBK_Resolution_100.zip<br> TopologyTracer analysis tracking backwards (BK) in time the evolution of the successful grains with different temporal resolution</p> <p>TrackingParallelTrackingFW_FID100.zip<br> TopologyTracer analysis tracking forward (FW) in time the metadata for all grains at time step 100</p> <p>TrackingParallelTrackingFW_Resolution_1.zip,<br> TrackingParallelTrackingFW_Resolution_20.zip,<br> TrackingParallelTrackingFW_Resolution_100.zip<br> TopologyTracer analysis tracking forward (FW) in time the evolution of all grains with different temporal resolution</p> <p>MPIEDevBranchPRX2D.zip<br> TopologyTracer analysis rendering of images and analysis scripts</p> <p>MPIEDevBranchPRX2DCapTrack.zip,<br> MPIEDevBranchPRX2DMajorRevPCA.zip,<br> MPIEDevBranchTrackSuccessful02.zip<br> TopologyTracer analysis of capillary tracking data in correlation with size and topology evolution and PCA</p>
Capillary- and stored-elastic-energy-driven anisotropic sub-grain coarsening (PRX2D) (Part 6)
<p><strong>Further details in the TopologyTracer documentation</strong><br> https://github.com/mkuehbach/TopologyTracer/tree/master/docs/build</p> <p><strong>Further details microstructure synthesis in the IMMMicrostructur generator documentation</strong><br> https://github.com/GraGLeS/IMM_MicrostructureGenerator/tree/master/docs/build/html</p> <p><strong>Repository content</strong></p> <p>Texture_Faces_260_to_449.zip<br> Grain boundary network geometry and grain meta data tracking data for time step 260 to 449 with 1 time step resolution</p>
Dataset for "A capillary bundle model for the electrical conductivity of saturated frozen porous media"
<p>This dataset supports the research study 'A capillary bundle model for the electrical conductivity of saturated frozen porous media' by H. L. Luo, D. Jougnot, A. Jost, J. D. Teng and L. D Thanh.</p> <p>We provide the experimental data from this study and the published data from Coperey et al. (2019a,b) and Duvillard et al. (2018, 2021) for verifing the proposed model with different PSDs (lognormal and fractal distribution).</p> <p>Matlab code Description:</p> <p>Untitled 1- the code for determining the electrical conductivity as a function of temperature and the sensitive analysis;</p> <p>Untitled 2- the code for comparison between the experimental data and the proposed model;</p> <p>Untitled 3- the code for comparison of the contribution between the bulk conduction and surface conduction to the total electrical conductivity;</p> <p>Untiled 4- the code for evolution of the effective formation factor as a function of the temperature.</p>
Figure 9. Mesochaetopterus xerecus. A, Dorsalmost capillary chaeta from A8. B in Description of a new species of Mesochaetopterus (Annelida, Polychaeta, Chaetopteridae), with redescription of Mesochaetopterus xerecus and an approach to the phylogeny of the family
Figure 9. Mesochaetopterus xerecus. A, Dorsalmost capillary chaeta from A8. B, Dorsolateral fine-lanceolate chaeta from A8. C, Lateroventral sickle-like chaeta from A8. D, Tip of the lateroventral sickle-like chaeta from A8. E, Ventralmost lancet-like chaeta from A8. F, Tip of the ventralmost lancet-like chaeta from A8. G, Ventralmost sickle-like chaeta from A10. Scale bars are in Mm.
Lysozyme, BSA, Thyroglobulin: SAXS measurement in solution in two capillary thicknesses (1 mm and 1.5 mm) with in situ UV-Vis
<p>SAXS measurement of three different proteins in solution in two capillary thicknesses (1 mm and 1.5 mm). Data include in situ UV-Vis absorption spectroscopy and UV-Vis absoroption spectroscopy using microvolume spectrometer (DeNovix DS-11) for comparison.</p> <p>Proteins used: Lysozyme, bovine serum albumine, thyroglobuline</p> <table> <tbody> <tr> <td><strong>File Name</strong></td> <td><strong>Description</strong></td> </tr> <tr> <td>sample_description.csv</td> <td>detailed description of individual samples</td> </tr> <tr> <td>DS11_UV_Tyr_Lys_BSA.zip</td> <td>data from microvolume spectrometer </td> </tr> <tr> <td>SAXS_1mm_raw.zip</td> <td>Raw unreduced SAXS data (2D images in H5 format), collected in 1mm capillary. Detailed description is in included HTML file.</td> </tr> <tr> <td>SAXS_1mm_reduced.zip</td> <td>SAXS data collected in 1mm capillary, reduced to 1D curves. Q-values are in 1/nm</td> </tr> <tr> <td>SAXS_1mm_subtracted.zip</td> <td>SAXS data collected in 1mm capillary, buffer subtracted. Q-values are in 1/nm</td> </tr> <tr> <td>SAXS_1p5mm_raw.zip</td> <td>Raw unreduced SAXS data (2D images in H5 format), collected in 1.5mm capillary. Detailed description is in included HTML file.</td> </tr> <tr> <td>SAXS_1p5mm_reduced.zip</td> <td>SAXS data collected in 1.5mm capillary, reduced to 1D curves. Q-values are in 1/nm</td> </tr> <tr> <td>SAXS_1p5mm_subtracted.zip</td> <td>SAXS data collected in 1.5mm capillary, buffer subtracted. Q-values are in 1/nm</td> </tr> <tr> <td>SAXS_UV_1mm_absorbance_sample_nonaveraged.zip</td> <td>UV-Vis absorption data collected using in-situ spectrometer. Mesurement in 1mm capillary. Only spectra collected when sample was present in capillary</td> </tr> <tr> <td>SAXS_UV_1mm_raw.zip</td> <td>Raw UV-Vis absorption data collected using in-situ spectrometer. Mesurement in 1mm capillary.</td> </tr> <tr> <td>SAXS_UV_1p5mm_absorbance_sample_nonaveraged.zip</td> <td>UV-Vis absorption data collected using in-situ spectrometer. Mesurement in 1.5mm capillary. Only spectra collected when sample was present in capillary</td> </tr> <tr> <td>SAXS_UV_1p5mm_raw.zip</td> <td>Raw UV-Vis absorption data collected using in-situ spectrometer. Mesurement in 1.5mm capillary.</td> </tr> </tbody> </table> <p> </p>
Imaging of Organic Samples with Megaelectron Volt Time-of-Flight Secondary Ion Mass Spectrometry Capillary Microprobe
<p>Time-of-flight Secondary Ion Mass Spectrometry (TOF SIMS) with MeV primary ions offers a fine balance between secondary ion yield for molecules in the mass range from 100 to 1000 Da and beam spot size, both of which are critical for imaging applications of organic samples. Using conically shaped glass capillaries with an exit diameter of a few micrometers, a high energy heavy primary beam can be collimated to less than 10 μm. In this work, imaging capabilities of such a setup are presented for some organic samples (leucine-evaporated mesh, fly wing section, ink deposited on paper). Lateral resolution measurement and molecular distributions of selected mass peaks are shown. The negative influence of the beam halo, an unavoidable characteristic of primary beam collimation with a conical capillary, is also discussed. A new start trigger for TOF measurements based on the detection of secondary electrons released by the primary ion is presented. This method is applicable for a continuous primary ion beam, and for thick targets that are not transparent to the primary ion beam. The solution preserves the good mass resolution of the thin target setup, where the detection of primary ions with a PIN diode is used for a start trigger, reduces the background, and enables a wide range of samples to be analyzed.</p>
Dataset for the journal article: " In-situ Capillary Pressure and its Interrelationships with Flow Characteristics during Steady-state Three-phase Flow in Water-wet Berea Sandstone"
<p>Dataset 1 contains the summary results of the image analysis performed on a set of three-phase micro-CT images. <br> The analysis are:(1) Fluid saturations, (2) Characteristics of Gas clusters, (3) Characteristics of Oil clusters, (4) Pore-fluid occupancy, and (5) In-situ capillary pressure measurements. </p> <p>Dataset 2 contains the three-phase relative permeability data with the correction analysis. </p>
Crepis capillaris (L.) Wallr. (BR0000011691129)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
Crepis capillaris (L.) Wallr. (BR0000011696018)
Belgium Herbarium image of <a href="https://www.plantentuinmeise.be">Meise Botanic Garden</a>.
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