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3 results for “Capirona”
Capirona decorticans Spruce from Colombia collected by L. Ramos, E. Álvarez, J. Cabezas, J. Rodriguez & C. Ibañez #25
<p><strong>File Name</strong>: <span>TOLI-24901-RAN-01-12-E-25.jpg</span></p> <p><strong>CÓDIGO FOTO</strong>: <span>TOLI-24901-RAN-01-12-E-25-</span></p> <p><strong>Fotografía</strong>: <span>SI</span></p> <p><strong>Nº TOLI</strong>: <span>TOLI-24901</span></p> <p><strong>PARCELA</strong>: <span>RAN-01</span></p> <p><strong>CÓDIGO</strong>: <span>12-E-25</span></p> <p><strong>Nº COLECTA</strong>: <span>25</span></p> <p><strong>NUEVOS COLECTORES</strong>: <span>Laura Isabel Ramos</span></p> <p><strong>COLECTORES</strong>: <span>L. Ramos, E. Álvarez, J. Cabezas, J. Rodriguez & C. Ibañez</span></p> <p><strong>Nº MUESTRAS MONTADAS</strong>: <span>1</span></p> <p><strong>Homologación</strong>: <span>Homologado</span></p> <p><strong>Nueva fecha del evento </strong>: <span>20/12/2018.</span></p> <p><strong>Fecha del evento</strong>: <span>27/11/2018.</span></p> <p><strong>Proyecto </strong>: <span>Recursos Botánicos Disponibles en Línea (BRAVO) para la flora Colombiana</span></p> <p><strong>Hábitat</strong>: <span>Bosque húmedo tropical (bh-T)</span></p> <p><strong>Continente</strong>: <span>SA</span></p> <p><strong>Pais</strong>: <span>Colombia</span></p> <p><strong>Estado/Provincia</strong>: <span>Meta</span></p> <p><strong>Municipio</strong>: <span>Puerto López</span></p> <p><strong>Centro poblado / Cabecera municipal</strong>: <span>La Serranía</span></p> <p><strong>Localidad</strong>: <span>Reserva Natural El Amparo</span></p> <p><strong>Elevación minima en metros</strong>: <span>200</span></p> <p><strong>Elevación maxima en metros</strong>: <span>250</span></p> <p><strong>Latitud</strong>: <span>4.020</span></p> <p><strong>Longitud original</strong>: <span>-72.600</span></p> <p><strong>datum geodésico</strong>: <span>WGS 84</span></p> <p><strong>Latitud decimal</strong>: <span>4.020</span></p> <p><strong>Longitud decimal</strong>: <span>-72.600</span></p> <p><strong>Identificado por</strong>: <span>Humberto Mendoza</span></p> <p><strong>Fecha de identificación</strong>: <span>24/01/2019.</span></p> <p><strong>Familia antigua</strong>: <span>Rubiaceae</span></p> <p><strong>Especie antigua</strong>: <span>NN</span></p> <p><strong>Nombre cientifico</strong>: <span>Capirona decorticans Spruce </span></p> <p><strong>Reino</strong>: <span>Plantae</span></p> <p><strong>Filo</strong>: <span>Magnoliophyta</span></p> <p><strong>Clase</strong>: <span>Equisetopsida</span></p> <p><strong>Orden</strong>: <span>Gentianales </span></p> <p><strong>Familia nueva</strong>: <span>Rubiaceae</span></p> <p><strong>Género nuevo</strong>: <span>Capirona</span></p> <p><strong>especie nueva</strong>: <span>decorticans </span></p> <p><strong>Autoría del nombre científico</strong>: <span>Spruce </span></p> <p><strong></strong>: <span>Rubiaceae</span></p> <p><strong>genero herbario</strong>: <span>Capirona</span></p> <p><strong>especie herbario</strong>: <span>decorticans</span></p> <p><strong>Especie de herbario para TNRS</strong>: <span>Capirona decorticans</span></p> <p><strong>Especie corregida herbario y desde TNRS</strong>: <span>Capirona decorticans</span></p> <p><strong>Familia corregida desde TNRS</strong>: <span>Rubiaceae</span></p> <p><strong></strong>: <span>3934</span></p>
Alignments used for phylogenetic analysis of capirona (Calycophyllum spruceanum, Rubiaceae)
<p>Capirona (<em>Calycophyllum spruceanum</em> Benth.) belongs to subfamily Ixoroideae, one of the major lineages in the Rubiaceae family, and is an important timber tree, with origin in the Amazon Basin and has widespread distribution in Bolivia, Peru, Colombia, and Brazil. In this study, we obtained the first complete chloroplast (cp) genome of capirona from department of Madre de Dios located in the Peruvian Amazon. High-quality genomic DNA was used to construct librar-ies. Pair-end clean reads were obtained by PE 150 library and the Illumina HiSeq 2500 platform. The complete cp genome of C. spruceanum has a 154,480 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (84,813 bp) and a small single-copy (SSC) region (18,101 bp), separated by two inverted repeat (IR) regions (25,783 bp). The annotation of <em>C. spruceanum</em> cp genome predicted 87 protein-coding genes (CDS), eight ribosomal RNA (rRNA) genes, 37 transfer RNA (tRNA) genes and one pseudogene. A total of 41 simple sequence repeats (SSR) of this cp genome were divided into mononucleotides (29), dinucleotides (5), trinucleotides (3), and tetranucleotide (4). Most of these repeats were distributed in the noncoding regions. Whole chloroplast genome comparison with the other six Ixoroideae species revealed that the small single copy and large single copy regions showed more divergence than invert regions. Finally, phylogenetic analysis resolved that C. spruceanum is a sister species to Emmenopterys henryi, and confirms its position within the subfamily Ixoroideae. This study reports for the first time the genome organization, gene content, and structural features of the chloroplast genome of <em>C. spruceanum</em>, providing valuable information for genetic and evolutionary studies in the genus Calycophyllum and beyond.</p>
Alignments used for phylogenetic analysis of capirona (Calycophyllum spruceanum, Rubiaceae)
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