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19 results for “Caryophyllidea”
Supplementary material 6 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure S3. Amino acid alignment for sites under positive selection for cytb : Explanation note: The positions of each site are denoted on the top. An asterisk * denotes sites with posterior probability value ≥ 0.95 in Bayes Empirical Bayes (BEB) analysis.
Supplementary material 3 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Table S3. Nucleotide composition and skewness of different elements of the studied mitochondrial genome :
Supplementary material 5 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure S2. Relative Synonymous Codon Usage (RSCU) of Parabreviscolexniepini : Explanation note: Codon families are labelled on the x-axis. Values on the top of the bars denote amino acid usage.
Supplementary material 4 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure S1. Sequence alignment of trnS1 for Parabreviscolexniepini and other cestodes : Explanation note: The position of the anticodon sequences was indicated.
Supplementary material 2 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Table S2. The list of cestodes species and outgroups used for comparative mitogenomic and phylogenetic analyses :
Supplementary material 1 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Table S1. Primers used to amplify and sequence the mitochondrial genomes of Parabreviscolexniepini :
Fig. 8 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 8 Scanning electron micrographs of Monobothrioides species. a, b M. cunningtoni Fuhrmann and Baer, 1925 (type species) from Auchenoglanis occidentalis, Democratic Republic of the Congo; c, d M. chalmersius (Woodland, 1924) from Clarias sp., Sudan; e–h M.
Fig. 7 Monobothrioides zuheiri n in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 7 Monobothrioides zuheiri n. sp. from Auchenoglanis occidentalis, White Nile at Kostí, Sudan. a total view, ventrally; b, c anterior end with first testes and vitelline follicles; d region of gonopores, laterally; e posterior part, ventrally; note posterior extent of vitelline follicles reaching ovary; f scolex; g cross section at testicular level; note tightly packed testes in two layers and longitudinal musculature formed by separated muscle fibres
Fig. 4 Monobothrioides tchadensis Troncy, 1978 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 4 Monobothrioides tchadensis Troncy, 1978 from Auchenoglanis occidentalis, Lower Congo River at Bulu, Democratic Repulic of the Congo. a Total view, ventrally; b, e anterior end with first testes and vitelline follicles; c scolex; d posteriod end, ventrally; note large, elongate cirrus-sac; f cross section at testicular level; note outer and inner longitudinal musculature formed by isolated muscle fibres
Fig. 6 Monobothrioides longicollis n in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 6 Monobothrioides longicollis n. sp. from Auchenoglanis occidentalis, Democratic Republic of the Congo. a Total view, dorsally; note that testes and median vitelline follicles are omitted in middle part of the body; b anterior end with first vitelline follicles and testes; note long neck and conspicuous distance between first vitelline follicles and testes; c scolex; note numerous longitudinal grooves and wide band of dark cells in posterior part of the scolex; d posterior part, ventrally; note posterior extent of vitelline follicles reaching the ovary; e cross section at testicular level; note bundles of muscle fibres of the inner longitudinal musculature extended laterally around lateral osmoregulatory canals
Fig. 5 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 5 Monobothrioides woodlandi Mackiewicz and Beverley-Burton, 1967 from Clarias ngamensis (= C. mellandi), Lake Chali, Zambia. a Total view of holotype (USNPC 61727); b, c scoleces (c— paratype BMNH 1967.1.16.1); d posterior end of holotype; e cross section at testicular level; note inner longitudinal musculature formed by bundles of muscle fibres, with a pair of lateral and two pairs of sublateral wide bundles of muscles
Figure 4 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 4 Phylogenetic tree of five cestode orders inferred from maximum likelihood analysis with concatenated nucleotide sequence of all 36 genes (12 PCGs, 2 rRNAs, and 22 tRNAs). Bootstrap (BS)/bayesian posterior probability (BPP) support values are shown above the nodes, only BS < 100 and BPP < 1 are displayed. Scale bar represents the estimated number of substitutions per site.
Figure 2 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 2 a The comparison of nucleotide skewness of the full genomes for the mitogenome of Parabreviscolexniepini and other cestodes b, c Principal component (PC) analysis of the codon usage and amino acid usage in the PCGs of P.niepini and other cestodes. The first PC (PC1) and the second PC (PC2) of the codon usage and amino acid usage accounted for 96.7% and 98.08% of the variability, respectively. d G+T content of complete genomes and their individual elements. The six caryophyllideans are represented by triangles in a-c. Abbreviations: AH: Atractolytocestushuronensis; BO: Breviscolexorientalis; Ksp2: Khawia sp. 2; KSK: Khawiasinensis; Ksp1: Khawia sp. 1; PN: Parabreviscolexniepini.
Figure 1 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 1 Circular representation of the mitochondrial genome of Parabreviscolexniepini. Different colors were used to indicated protein-coding genes (12) (red), tRNAs (22) (yellow), rRNAs (2) (green), and non-coding regions (grey). Tapeworm was stained with iron acid carmine.
Figure 3 from: Xi B-W, Zhang D, Li W-X, Yang B-J, Xie J (2018) Characterization of the complete mitochondrial genome of Parabreviscolex niepini Xi et al., 2018 (Cestoda, Caryophyllidea). ZooKeys 783: 97-112. https://doi.org/10.3897/zookeys.783.24674
Figure 3 Tandem repeats in two main non-coding regions of Parabreviscolexniepini.
Fig. 9 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 9 Distribution map of nominal Monobothrioides spp. according to existing voucher material. Ichthyological provinces are marked as follows: I. Maghreb, II. Nilo Sudan, IIa. Abyssinian subprovince, III. Upper Guinea, IV. Lower Guinea, V. Congo, VI. Quanza, VII. Zambezi, VIII. East Coast, IX. Southern province (map orig. M. Jirků; delimitation of ichthyological provinces modified after Lévêque et al. 2008)
Fig. 2 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 2 Monobothrioides cunningtoni Fuhrmann and Baer, 1925 from Parauchenoglanis punctatus, Central African Republic (a, c, d—IPCAS C-535/1) and Auchenoglanis occidentalis, Zambia (b—BMNH 1928.5.22.117–124; e—syntype; MHNG-PLAT-41609). a Complete specimen, dorsal view; b, c scolex; d terminal genitalia, ventral view; e cross section at the testicular level
Fig. 3 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 3 Monobothrioides chalmersius (Woodland, 1924) from Clarias spp. a complete worm from C. anguillaris, Senegal (MHNG-PLAT-34719), dorsal view; b anterior region with first testes situated very far posterior to anteriormost vitelline follicles; c scolex; d posterior region of syntype from C. anguillaris, Sudan (BMNH 1961.3.14.43), dorsal view
Fig. 1 in High species diversity of fish tapeworms in congeneric hosts in Africa: revision of Monobothrioides (Cestoda: Caryophyllidea), including description of two new species and molecular phylogeny
Fig. 1 Best-scoring maximum likelihood tree based on the concatenated (ssrDNA, lsrDNA) dataset estimated in IQ-TREE under the TIM2+F+R2 model. Nodal supports depict standard bootstrap values (1000 replicates); only values>50 are shown. The branch length scale bar indicates number of
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