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3,643 results for “Cervical”
TCGA Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (CESC) Gene Expression
<p><strong>Abstract:</strong></p> <p>The Cancer Genome Atlas (TCGA) was a large-scale collaborative project initiated by the National Cancer Institute (NCI) and the National Human Genome Research Institute (NHGRI). It aimed to comprehensively characterize the genomic and molecular landscape of various cancer types. This dataset contains information about CESC, a type of cancer that affects the cells lining the cervix and can have squamous cell or adenocarcinoma histological subtypes. The gene expression profile was measured experimentally using the Illumina HiSeq 2000 RNA Sequencing platform by the University of North Carolina TCGA genome characterization center. The Sample IDs serve as unique identifiers for each sample.</p> <p><strong>Inspiration:</strong></p> <p>This dataset was uploaded to UBRITE for GTKB project. </p> <p><strong>Instruction:</strong></p> <p>The log2(x+1) normalization was removed, and z-normalization was performed on the dataset using a Python script.</p> <p><strong>Acknowledgments:</strong></p> <p>Goldman, M.J., Craft, B., Hastie, M. et al. Visualizing and interpreting cancer genomics data via the Xena platform. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0546-8</p> <p>The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113–1120 (2013). https://doi.org/10.1038/ng.2764</p> <p><strong>U-BRITE last update: </strong>07/13/2023</p>
Supplementary files for Molecular Differences Between Squamous Cell Carcinoma and Adenocarcinoma Cervical Cancer Subtypes: Potential Prognostic Biomarkers
<p>Supplementary files for Molecular Differences Between Squamous Cell Carcinoma and Adenocarcinoma Cervical Cancer Subtypes: Potential Prognostic Biomarkers</p>
Artificial Intelligence Enables Precision Diagnosis of Cervical Cytology Grades and Cervical Cancer
<p>This repository includes source data used to genrtate all tables and figures for published stduy "Artificial Intelligence Enables Precision Diagnosis of Cervical Cytology Grades and Cervical Cancer". Besides, a small set of digital images for different class of cervical smear samples are included.</p>
Data to "Phantom-based quality assurance for multicenter quantitative MRI in locally advanced cervical cancer"
<p>This record includes the DICOM images and analysed data that were used in the multicenter QA program for quantitative MRI in cervical cancer as published (<a href="https://www.sciencedirect.com/science/article/pii/S0167814020307854?via%3Dihub">https://doi.org/10.1016/j.radonc.2020.09.013</a> ).</p> <p>The DICOM data includes the acquired DICOM data for each institute selected to those that were used in the publication. Acquisitions that were not used were removed. Data was anonymized with conquest dicom server tools.</p> <p>The analyzed data files are included giving per measurement the estimated quantitative parameter values as well as the position of the ROIs and extracted signal intensity values per phantom sample. An explanation of the structure of the files is added in the readme file. The analysis was done with in-house written code in matlab.</p> <p>Included are a description of the sequence parameters for each institute (IQEMBRACE_PhantomQA_OverviewInstitutionalSequenceParameters_20241114) and details on the choices in the analysis of the data (IQEMBRACE_PhantomQA_OverviewPhantomData_20241114). As background also the description of the measurements was added, giving more information on how the measurements were performed.</p> <p>This work was in preparation for the IQ-EMBRACE trial (clinicaltrials.gov NCT03210428)</p>
Full summary statistics of mixQTL for GTEx v8 Brain_Spinal_cord_cervical_c-1
The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original paper if using the data.
РИС. 2. Скульптура постЭмбриональных оборотов раковины крымских Clausiliidae. A. Cochlodina laminata. B. Mentissa canalifera. C. Balea perversa. D. Mentissa gracilicosta. E. Macrogastra plicatula. F–I. Устье и ЗатылочнаЯ область раковины Balea perversa с г. Демерджи (Крым, РоссиЯ). Все иЗображениЯ приблиЗительно в одном масШтабе. FIG. 2. Sculpture of postembryonic whorls of the Crimean Clausiliidae shells. A. Cochlodina laminata. B. Mentissa canalifera. C. Balea perversa. D. Mentissa gracilicosta. E. Macrogastra plicatula. F–I. Mouth and cervical area of the Balea perversa shell from Demerdzhi mountain (Crimea, Russia). All images are approximately at the same scale. in О достоверности находок Balea perversa (Gastropoda: Pulmonata: Clausiliidae) в Крыму
РИС. 2. Скульптура постЭмбриональных оборотов раковины крымских Clausiliidae. A. Cochlodina laminata. B. Mentissa canalifera. C. Balea perversa. D. Mentissa gracilicosta. E. Macrogastra plicatula. F–I. Устье и ЗатылочнаЯ область раковины Balea perversa с г. Демерджи (Крым, РоссиЯ). Все иЗображениЯ приблиЗительно в одном масШтабе. FIG. 2. Sculpture of postembryonic whorls of the Crimean Clausiliidae shells. A. Cochlodina laminata. B. Mentissa canalifera. C. Balea perversa. D. Mentissa gracilicosta. E. Macrogastra plicatula. F–I. Mouth and cervical area of the Balea perversa shell from Demerdzhi mountain (Crimea, Russia). All images are approximately at the same scale.
FIG. 4. — Cervical PVL 4170 in Osteological revision of the holotype of the Middle Jurassic sauropod dinosaur Patagosaurus fariasi Bonaparte, 1979 (Sauropoda: Cetiosauridae)
FIG. 4. — Cervical PVL 4170 (3) in lateral (A, B), posterior, (C) anterior, (D), ventral (E) and dorsal (F) views. Abbreviations: acdl, anterior centrodiapophyseal lamina, cprl, centroprezygapophyseal lamina, cpol, centropostzygapophyseal lamina, dp, diapophysis, hypa, hypapophysis, nc, neural canal, ns, neural spine, pcdl, posterior centrodiapophyseal lamina, pp, parapophysis, po, postzygapophysis, prcdf, prezygapophyseal centrodiapophyseal fossa, pocdf, postzyga- pophyseal centrodiapophyseal fossa, prdl, prezygapophyseal diapophyseal lamina, pre, prezygapophysis, sdf, spinodiapophysal fossa, spof, spinopostzyga- pophyseal fossa, spol, spinopostzygapophyseal lamina, sprf, spinoprezygapophyseal fossa, sprl, spinoprezygapophyseal lamina, tprl, intraprezygapophyseal lamina, vk, ventral keel. Scale bar: 10 cm.
nal; E', F', internal, G'-J', Pal. 1341 (peripheral 8); G', H', external; I', J', internal; K'-N', Pal. 1343 (peripheral 9); K', L', external; M', N', internal; O'-R', Pal. 1345 (peripheral 10); O', P', external; Q', R', internal; S'-V', Pal. 1348 (peripheral 11); S', T', external; U', V', internal views; W', reconstruction of carapace Thick lines correspond to scute sulci, dotted lines denote plate sutures, and oblique lines indicate missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Spr, supracaudal; Ve, vertebral. Scale bars: A-V', 1 cm; W', 2.5 cm. in Fossil turtles from the early Miocene localities of Mokrá-Quarry (Burdigalian, MN4), South Moravian Region, Czech Republic
nal; E', F', internal, G'-J', Pal. 1341 (peripheral 8); G', H', external; I', J', internal; K'-N', Pal. 1343 (peripheral 9); K', L', external; M', N', internal; O'-R', Pal. 1345 (peripheral 10); O', P', external; Q', R', internal; S'-V', Pal. 1348 (peripheral 11); S', T', external; U', V', internal views; W', reconstruction of carapace Thick lines correspond to scute sulci, dotted lines denote plate sutures, and oblique lines indicate missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Spr, supracaudal; Ve, vertebral. Scale bars: A-V', 1 cm; W', 2.5 cm.
sal; W, visceral; X-Z, Pal. 1308 (costal 5); X, Y, dorsal; Z, visceral; A'-C', Pal. 1309 (costal 6); A', B', dorsal; C', visceral; D'-F', Pal. 1310 (costal 8); D', E', dorsal; F', visceral; G'-J', Pal. 1312 (peripheral 1); G', H', dorsal; I', J', visceral; K'-N', Pal. 1313 (peripheral 7); K', L', dorsal; M', N', visceral; O'-R', Pal. 1314 (peripheral 8); O', P', dorsal; Q', R', visceral views; S', reconstruction of carapace. Thick lines indicate to scute sulci, dotted lines sutures and oblique lines denote missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Ve, vertebral. Scale bars: 1 cm. in Fossil turtles from the early Miocene localities of Mokrá-Quarry (Burdigalian, MN4), South Moravian Region, Czech Republic
sal; W, visceral; X-Z, Pal. 1308 (costal 5); X, Y, dorsal; Z, visceral; A'-C', Pal. 1309 (costal 6); A', B', dorsal; C', visceral; D'-F', Pal. 1310 (costal 8); D', E', dorsal; F', visceral; G'-J', Pal. 1312 (peripheral 1); G', H', dorsal; I', J', visceral; K'-N', Pal. 1313 (peripheral 7); K', L', dorsal; M', N', visceral; O'-R', Pal. 1314 (peripheral 8); O', P', dorsal; Q', R', visceral views; S', reconstruction of carapace. Thick lines indicate to scute sulci, dotted lines sutures and oblique lines denote missing plate portions. Abbreviations: Ce, cervical; co, costal; Ma, marginal; ne, neural; nu, nuchal; per, peripheral; Pl, pleural; py, pygal; sp, suprapygal; Ve, vertebral. Scale bars: 1 cm.
Breaking the constraint on the number of cervical vertebrae in mammals: on homeotic transformations in lorises and pottos
<p><strong>Data-collection</strong></p> <p><em>Specimens</em>. We analysed 1090 skeletons of wild-born primates belonging to 60 species of ten families (Table 1). These skeletons are held in collections of ten European and American natural history museums (Naturalis Biodiversity Center, Leiden (Naturalis); The Natural History Museum, London (NHMUK); the Royal Museum for Central Africa, Tervuren (RMCA); the Royal Belgian Institute of Natural Sciences, Brussels (RBINS); the Natural History Museum of Denmark, Copenhagen (ZMUC); Naturhistorisches Museum Wien, Vienna (NHMW); the Swedish Museum of Natural History, Stockholm (NRM); Museum fur Naturkunde, Berlin (MfN); and the National Museum for Natural History, Paris (MNHN), Natural History Museum Oslo, American Museum of Natural History, New York, Field Museum of Natural History, Chicago (FMNH). Five families belonged to the Strepsirrhini (Lorisidae, Galagidae, Daubentoniidae, Lemuridae, Indriidae) and five to the Haplorrhini, of which two Platyrrhini (Cebidae, Atelidae) and three Catarrhini (Cercopithecidae, Hylobatidae, Hominidae).</p> <p><strong>Cervical vertebrae and transitional cervicothoracic vertebrae</strong>. We determined the number of cervical vertebrae and transitional cervicothoracic vertebrae (vertebrae with both cervical and thoracic characteristics, i.e. a seventh vertebrae with a rudimentary rib or one full rib instead of two, or an eighth vertebrae with rudimentary ribs or without ribs on one side). The identification of transitional cervicothoracic vertebrae was based on the presence of cervical or rudimentary first ribs. In the case of a fusion of rudimentary cervical ribs with the transverse process (apophysomegaly), the vertebra was counted as a transitional cervicothoracic vertebra when the transverse process was at least 15% longer than that of the first thoracic vertebra, or when traces of the articulation were still visible.</p> <p><strong>Explanatory variables. </strong>Per specimen where we determined the vertebral pattern, we recorded the species, life style ("fast" vs. "slow"), individual age class and sex and whether the animal was kept in a zoo later in life or not. This last indicator variable can accommodate effects of relaxed selection in captive environments on the probability of finding an abnormal pattern.</p> <p><strong>Phylogeny. </strong>We used the consensus phylogeny of primates provided by the 10k Trees Project (Arnold & Nunn, 2010) to represent our data per species graphically and to calculate correlations between species effects</p> <p><strong>Statistical analysis. </strong>The R script with our analysis is added.</p> <p> </p>
FIGURE 3. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians
FIGURE 3. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in ventral aspect. 1. Vertebrae 23,24,25, anterior end, to right. Scale bar, 5 cm. 2. Enlargement of osteophytic bridging between vertebrae 23-24, 24- 25. Abbreviations: ns, neural spine; cr, cervical rib. Scale bar equals 5 cm.
FIGURE 1. Fused cervical vertebrae 12 and 13 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians
FIGURE 1. Fused cervical vertebrae 12 and 13 in juvenile Muraenosaurus sp. (NWM 19.96.G17) in 1. ventral 2. left lateral 3. right lateral and 4. dorsal view. 5. Ventral view of vertebral series (numbered), showing abnormal position of ventral foramina in vertebrae 10 and 11, and symmetrical positioning in 14, 15. 6. Reconstruction of Muraenosaurus (from Andrews, 1910) showing position of vertebral fusion. Abbreviations: for, foramina subcentralia; naf, neural arch facets. Scale bar equals 4 cm.
FIGURE 4. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in Congenital and late onset vertebral fusions in long necked plesiosaurs: The first report of spondylosis deformans in Sauropterygians
FIGURE 4. Cervical vertebral series from Callawayasaurus columbensis UCMP 38349 in ventral aspect. 1. Vertebrae 15-18, anterior end to right. Scale bar equals 5 cm. 2. Enlargement showing claw-like ventral expansion projecting antero-posteriorly between vertebrae 16-17, 17-18. 3. Ventral view of cervical series from UCMP 38349 without pathologies, vertebrae 32-35. Abbreviations: ns, neural spine; cr, cervical rib; ve, pathological ventral expansion. Scale bar equals 5 cm.
→ Fig. 2. Representative skeletal elements of ornithosuchid archosaur Dynamosuchus collisensis gen. et sp. nov. (CAPPA/UFSM 0248) from Janner outcrop, Carnian, Late Triassic. A. Selected skull bones in left lateral view. B. Reconstruction of the skull. C. Skull in ventral view. D. Left quadrate and quadratojugal in posterodorsal view. E. Parabasisphenoid in left lateral view. F. Neural arch of an anterior cervical vertebra in anterior view. G. Centrum of a cervical vertebra in left lateral view. H. Right osteoderm in dorsal view. I. Neural arch of an anterior dorsal vertebra in left lateral view. J. Left ilium in lateral view. L. Right humerus in anterior view. M. Right forearm in medial view. N. Left manus in dorsal view. O. Right (reversed) pubis in lateral view. P. Left femur in anterior view. Q. Left fibula in lateral view. Some unpreserved portions are modified from Baczko et al. in press, for the reconstruction of the skeleton of CAPPA/UFSM 0248 (preserved elements indicated in orange) (K). Scale bars 20 mm. in The first ornithosuchid from Brazil and its macroevolutionary and phylogenetic implications for Late Triassic faunas in Gondwana
→ Fig. 2. Representative skeletal elements of ornithosuchid archosaur Dynamosuchus collisensis gen. et sp. nov. (CAPPA/UFSM 0248) from Janner outcrop, Carnian, Late Triassic. A. Selected skull bones in left lateral view. B. Reconstruction of the skull. C. Skull in ventral view. D. Left quadrate and quadratojugal in posterodorsal view. E. Parabasisphenoid in left lateral view. F. Neural arch of an anterior cervical vertebra in anterior view. G. Centrum of a cervical vertebra in left lateral view. H. Right osteoderm in dorsal view. I. Neural arch of an anterior dorsal vertebra in left lateral view. J. Left ilium in lateral view. L. Right humerus in anterior view. M. Right forearm in medial view. N. Left manus in dorsal view. O. Right (reversed) pubis in lateral view. P. Left femur in anterior view. Q. Left fibula in lateral view. Some unpreserved portions are modified from Baczko et al. in press, for the reconstruction of the skeleton of CAPPA/UFSM 0248 (preserved elements indicated in orange) (K). Scale bars 20 mm.
Cervical Proprioception, Postural Control, and Pain
<p>The dataset comprises demographic and clinical characteristics of two groups: 82 Rheumatoid Arthritis (RA) patients and 82 asymptomatic individuals. The RA patients have a mean age of 55.25 years (SD = 10.02), while the asymptomatic individuals have a mean age of 54.18 years (SD = 10.15), with both groups having an age range of 40-70 years. Gender distribution is identical, with 20% males and 80% females in each group. Marital status differs slightly; 36% of RA patients are single, and 66% are married, compared to 39% and 61% in the control group. Educational attainment shows 27% of RA patients completed high school, 49% have college degrees, and 24% hold graduate degrees, compared to 30%, 43%, and 27% in the control group. Employment status reveals 61% of RA patients are employed, 24% are unemployed, and 15% fall into other categories, similar to 63%, 22%, and 15% in the control group. </p>
Dataset of Cervical Cell Images for the Study of Changes Associated with Malignancy in Conventional Pap Test
<p>This data set was approved by CEP, a human-research ethics committee {Comitê de Ética em Pesquisa de Campinas}, Brazil <em>(CAAE approval number: 71277217.6.0000.5404) </em></p> <p>Cervical cancer prevention campaign was carried out at the University of Campinas (Brazil), where 71 women were treated. For this study, six women were chosen: non-pre-menopausal, non-pregnant and between the ages of 25 and 40 years. Samples diagnosed with normal squamous lesions, atypia in squamous cells of undetermined significance (AC-US), low-grade squamous intraepithelial lesion LEI (changes associated with HPV infection or light dislocation (NIC 1)), and immature squamous metaplasia, were chosen. All samples were collected before treatment. The patients were anonymized and assigned a unique identifier. The criterion to limit the number of plates used in this study is related to the large amount of data to be processed and the computational cost necessary for this process.</p> <p>Raw data sets are available as CSV files. Each data was numbered to include the identification of the meta-data, along with the tag of the images following a sequence. For example, the data file<em> “ 01-CAP091868-MORF.csv ”</em> has the prefix 01 that refers to the sequential numbering of the files with the data from the digitized slide.</p> <p>The data set contains 102 digitized images of the human papilloma examination of 7 different patients. They were segmented 962</p>
Pelvic arcade and vertebral structure of the second chief specimen of Tyrannosaurus rex, Amer. Mus. 5027, discovered in 1908. An orthogonal projection executed on a very large scale and reproduced one-twelfth natural size. C 1-C 10 cervical series, D 1-D 13 dorsal or thoracic series, S 1-S 5 sacral series, Cd 1- Cd 53 caudal series. The caudals actually preserved are shaded; those drawn in outline are conjectural and restored. The total number of caudals is conjectural. in Skeletal Adaptations of Ornitholestes, Struthiomimus, Tyrannosaurus
Pelvic arcade and vertebral structure of the second chief specimen of Tyrannosaurus rex, Amer. Mus. 5027, discovered in 1908. An orthogonal projection executed on a very large scale and reproduced one-twelfth natural size. C 1-C 10 cervical series, D 1-D 13 dorsal or thoracic series, S 1-S 5 sacral series, Cd 1- Cd 53 caudal series. The caudals actually preserved are shaded; those drawn in outline are conjectural and restored. The total number of caudals is conjectural.
anatomical measurement of cervical lateral mass for cervical pedicle screw and paravertebral foramen screw insertion
<p>The anatomical pedicle transverse angle (PTA) and linear parameters of the lateral mass were measured, and the relationship between the calculated angles and the anatomical PTA was investigated. θp was defined as the convergence angle from the posterolateral edge of the lateral mass to the pedicle, and θc was defined as the convergence angle from the posterolateral edge of the lateral mass to the anterolateral corner of the vertebral foramen. The thickness of the cortical bone of the medial wall of the lateral mass (cT) and the medial (mT) and lateral (lT) walls of the pedicle at C3–7 were also measured.</p>
Fig. 4. Morphological comparisons between Lower and Middle Jurassic African sauropod middle cervical vertebrae. A in Sauropod dinosaur remains from a new Early Jurassic locality in the Central High Atlas of Morocco
Fig. 4. Morphological comparisons between Lower and Middle Jurassic African sauropod middle cervical vertebrae. A. Pulanesaura (BP/1/6199; McPhee et al. 2015: fig. 4). B. Jobaria tiguendis (MNN TIG F40-49; PDM personal observation 2013). C. Eusauropoda indet. (NHMUK PV R36834). D. Spinophorosaurus nigerensis (Remes et al. 2009: fig. 3A). Scale bars 100 mm.
Fig. 11. Abelisaurid dinoasaur Carnotaurus sastrei Bonaparte, 1985 in The cervical vertebrae of the Late Cretaceous abelisaurid dinosaur Carnotaurus sastrei
Fig. 11. Abelisaurid dinoasaur Carnotaurus sastrei Bonaparte, 1985 (MACN-CH 894), Argentina, La Colonia Formation, Maastrichtian, Upper Cretaceous. Cervical 10 in anterior (A), posterior (B), left lateral (C), dorsal (D), and ventral (E) views.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.