Find research datasets worth reusing

opencc-by-4.0Dec 2016View details →

X-ray diffraction images used for refinement of cytochrome cL from Methylobacterium extorquens.

X-ray diffraction images for cytchrome cL from M. extorquens extending to 1.6 Angstroms resolution that were collected at ID14-2 at the ESRF (Grenoble) in April 2001. This dataset was used for high resolution refinement of the structure.

opencc-by-4.0Oct 2022View details →

HOWS-CL-25: Household Objects Within Simulation Dataset for Continual Learning

HOWS-CL-25 (Household Objects Within Simulation dataset for Continual Learning) is a synthetic dataset especially designed for object classification on mobile robots operating in a changing environment (like a household), where it is important to learn new, never seen objects on the fly. This dataset can also be used for other learning use-cases, like instance segmentation or depth estimation. Or where household objects or continual learning are of interest. Our dataset contains 150,795 unique synthetic images using 25 different household categories with 925 3D models in total. For each of those categories, we generated about 6000 RGB images. In addition, we also provide a corresponding depth, segmentation, and normal image. The dataset was created with BlenderProc [Denninger et al. (2019)], a procedural pipeline to generate images for deep learning. This tool created a virtual room with randomly textured floors, walls, and a light source with randomly chosen light intensity and color. After that, a 3D model is placed in the resulting room. This object gets customized by randomly assigning materials, including different textures, to achieve a diverse dataset. Moreover, each object might be deformed with a random displacement texture. We use 774 3D models from the ShapeNet dataset [A. X. Chang et al. (2015)] and the other models from various internet sites. Please note that we had to manually fix and filter most of the models with Blender before using them in the pipeline! For continual learning (CL), we provide two different loading schemes: - Five sequences with five categories each - Twelve sequences with three categories in the first and two in the other sequences. In addition to the RGB, depth, segmentation, and normal images, we also provide the calculated features of the RGB images (by ResNet50) as used in our RECALL paper. In those two loading schemes, ten percent of the images are used for validation, where we ensure that an object instance is either in the training or the validation set, not in both. This avoids learning to recognize certain instances by heart. We recommend using those loading schemes to compare your approach with others. Here we provide three files for download: - HOWS_CL_25.zip [124GB]: This is the original dataset with the RGB, depth, segmentation, and normal images, as well as the loading schemes. It is divided into three archive parts. To open the dataset, please ensure to download all three parts. - HOWS_CL_25_hdf5_features.zip [2.5GB]: This only contains the calculated features from the RGB input by a ResNet50 in a .hdf5 file. Download this if you want to use the dataset for learning and/or want to compare your approach to our RECALL approach (where we used the same features). - README.md: Some additional explanation. For further information and code examples, please have a look at our website: https://github.com/DLR-RM/RECALL.

opencc-by-4.0Mar 2018View details →

Computational data for selection of PBE+50HFX functional for studying Ru-Cl/H-PR3 complexes

The dataset provides all relevant computational data for selecting the hybrid GGA functional (PBE) with 50% HF exchange and saturated (def2TZVP) basis set as the most reasonable level of theory that reproduces the current golden standard of CCSD(T) results for Ru-Cl/H-PR3 complexes. The file inventory gives you an overview of the data entries provided.  The PDF file labelling.pdf defines the symbols used for labelling various complexes. In brief, the archive content is as follows: basis sets - definition of BS1 to BS5  Z-matrix definitions - definition of internal coordinates for isomers considered operational procedures - operation procedures for how to derive atomic orbital compositions density functionals - optimized structures calculated using various density functionals wave functions - optimized structures calculated at various levels of wave function theory population analyses - summary of electronic structure analysis difference density - manipulated cube files used for electron density contours CCDB - optimized structures of XRD characterized Ru-Cl/H-PR3 complexes chemical speciation - structural optimization and energetics of reaction pathways

opencc-by-4.0Jun 2023View details →

CL-MASR

CL-MASR Dataset This is the dataset used in the continual learning for multilingual ASR (CL-MASR) benchmark. It is composed of speech recordings from 20 languages selected from the Common Voice 13 dataset. For each language, it includes up to 10/1/1 hours for train/dev/test, respectively. The CL-MASR benchmark platform is available in the SpeechBrain toolkit (see recipes/CommonVoice): https://github.com/speechbrain/speechbrain The original Common Voice 13 data are available at: https://commonvoice.mozilla.org/en/datasets List of Languages - English (en) - Chinese (zh-CN) - German (de) - Spanish (es) - Russian (ru) - French (fr) - Portuguese (pt) - Japanese (ja) - Turkish (tr) - Polish (pl) - Kinyarwanda (rw) - Esperanto (eo) - Kabyle (kab) - Luganda (lg) - Meadow Mari (mhr) - Central Kurdish (ckb) - Abkhaz (ab) - Kurmanji Kurdish (kmr) - Frisian (fy-NL) - Interlingua (ia)

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Porewater nutrient concentration data [SRP, NH4+, S-2, Cl-] from several sites along the Rowley and Parker Rivers, MA and Wells NEER, ME.

openCustomJan 2020View details →

opencc-by-4.0Dec 2016View details →

X-ray diffraction images for cytochrome cL from the methylotrophic bacterium Methylobacterium extorquens.

X-ray diffraction images for cytochrome cL from Methylobacterium extorquens collected at the ESRF beamline ID14-2 using an ADSC detector in Feb 2001. The diffraction data extend to around 2.0 Angstroms resolution and were used for the initial structure determination of this protein. Further details in the log files and the notes.

opencc-by-4.0Oct 2023View details →

2D Halide Perovskite (PEA2PbBr4, PEA2PbI4) CL and EDX dataset

1) Dataset of hyperspectral cathodoluminescence (CL) maps for three samples: PEA2PbBr4, PEA2PbI4 and lateral heterostructures PEA2PbBr4-I4.Hyperspectral data is stored in the <a href="http://hyperspy.org/hyperspy-doc/current/user_guide/io.html#hspy-format">"hspy"</a> HyperSpy HDF5 specification, and can be loaded and analysed using Python (see <a href="http://hyperspy.org/hyperspy-doc/current/index.html">HyperSpy documentation</a>). Each hspy file contains comprehensive measurement metadata accessible in the "original_metadata" attribute in Python.2) Dataset of hyperspectral energy-dispersive X-ray (EDX) spectroscopy for PEA2PbBr4-I4. Also in "hspy" format.

opencc-by-4.0Apr 2024View details →

Phenomenological images (CL-CAM1B) of Crater Lake CALM site, Deception island, Antarctica (2023).

Images acquired by a phenomenological automatic time-lapse camera (CL-CAM1B) located in Crater Lake permafrost and active layer monitoring site in Crater Lake sounders in Deception island, Antarctica, in 2023. <ul> <li>File code: DEC_CL_CAM1B_2023_v100</li> <li>Location code: DEC</li> <li>Site code: CL</li> <li>Instrument code: CAM1B</li> <li>Period: 2023</li> <li>Version: 1.0.0 (jpg images as they were obtained from camera, without processing)</li> <li>Camera/manufacturer: CC5MPX by Campbell Scientific Inc.</li> <li>Resolution/Type/Format: 5Mpixels in RGB in jpg files</li> <li>Frequency: 3 images per day at 14h, 15h and 16h GMT</li> <li>Site: Close to Crater Lake CALM site, in Crater Lake sounders of Deception island, Antarctica.</li> <li>Location: </li> <li>Elevation:</li> <li>Initial dataset date/time: March 6, 2023 16:00h GMT</li> <li>Final dataset date/time: February 18, 2024 16:00h GMT</li> <li>Gaps: None</li> <li>Notes: <ul> <li>Folders: 12</li> <li>Files: 1048</li> <li>Other files: none</li> <li>Folder names structure: year_month</li> <li>Datafiles names structure:  Site_camera_year_month_day_hour_minute_second.jpg</li> </ul> </li> </ul>

Expert Finding Benchmark Datasets (IR, CL and SW communities)

This is the updated version of the original benchmark expert finding datasets proposed by the authors of this paper - <a href="https://doi.org/10.1145/2508497.2508501">https://doi.org/10.1145/2508497.2508501</a>. The current version is released as part of Neural Expert Finder (NEF), a novel expert finding approach utilizing transformer based pre-trained language models.

CL emission and absorption spectra of MoS2 pyramids

Cathodoluminescence spectra of MoS2 pyramid on sapphire substrate. Extensive experimental data used for the publication: <a href="https://doi.org/10.1039/D1NR06041D">https://doi.org/10.1039/D1NR06041D</a> "Excitonic absorption and defect related emission in three-dimensional MoS2 pyramids" In the file the maps with the different areas highlighted. To each area corresponds an average spectrum.

opencc-by-4.0Mar 2022View details →

Boron-Doped-HPHT-Diamond CL Dataset

Cathodoluminescence datasets and analysis notebooks accompanying the following publication: https://doi.org/10.1016/j.carbon.2022.01.030 The analysis files rely on the development hyperspy version at the time of release (1.6.1). If compatibility issues arise with newer versions, please ask the curator of this repository for an update of the analysis notebooks.

Text-fig. 9. Paramblypterus cf. rohani. Scale bars 5 mm. a, b: drawing and photograph of the skull in lateral view, locality Otovice "Stěnava", DP 4529; c, d: photograph and drawing of the skull in lateral view, locality Otovice "Chmelnice", P 64673; e: bones of the skull roof in dorsal view, locality Otovice "Chmelnice", P 64656; f: bones of the skull roof in dorsal view, locality Otovice "Chmelnice", P 30945; g, h: drawing and photograph (whitened) of the bones of the skull roof in dorsal view, locality Otovice "Chmelnice", P 64658. Abbreviations: ap – anterior pit line, Cl – cleithrum, Cor – coronoid, Dhy – dermohyal, Dpt – dermopterotic, Dsph – dermosphenotic, Extl – extrascapular lateral, Extm – extrascapular medial, Fr – frontal, Gul – lateral gular, Gum – medial gular, ioc – infraorbital canal, Ios – infraorbital superior, Ju – jugal, mc – mandibular canal, Md – mandible, Mx – maxila, mp – medial pit line, Na – nasal, Op – operculum, Pa – parietal, Pop – preoperculum, pp – posterior pit line, Psp – postspiracular, Pt – posttemporal, Ptr – postrostral, Qu – quadratum, Rbr – branchiostegaly rays, Sbo – suborbital, soc – supraorbital canal, Sop – suboperculum, Spi – spiracular. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)

Text-fig. 9. Paramblypterus cf. rohani. Scale bars 5 mm. a, b: drawing and photograph of the skull in lateral view, locality Otovice "Stěnava", DP 4529; c, d: photograph and drawing of the skull in lateral view, locality Otovice "Chmelnice", P 64673; e: bones of the skull roof in dorsal view, locality Otovice "Chmelnice", P 64656; f: bones of the skull roof in dorsal view, locality Otovice "Chmelnice", P 30945; g, h: drawing and photograph (whitened) of the bones of the skull roof in dorsal view, locality Otovice "Chmelnice", P 64658. Abbreviations: ap – anterior pit line, Cl – cleithrum, Cor – coronoid, Dhy – dermohyal, Dpt – dermopterotic, Dsph – dermosphenotic, Extl – extrascapular lateral, Extm – extrascapular medial, Fr – frontal, Gul – lateral gular, Gum – medial gular, ioc – infraorbital canal, Ios – infraorbital superior, Ju – jugal, mc – mandibular canal, Md – mandible, Mx – maxila, mp – medial pit line, Na – nasal, Op – operculum, Pa – parietal, Pop – preoperculum, pp – posterior pit line, Psp – postspiracular, Pt – posttemporal, Ptr – postrostral, Qu – quadratum, Rbr – branchiostegaly rays, Sbo – suborbital, soc – supraorbital canal, Sop – suboperculum, Spi – spiracular.

Text-fig. 12. Paramblypterus cf. rohani. Arrows indicate directio cranialis. a, b: photograph and drawing of four ridge scales in front of the dorsal fin base, locality Otovice "Chmelnice", P 80178, scale bars 5 mm; c: scale rows from the area between the pectoral and pelvic fins, outer surfaces of the scales bear fine ridges terminating as denticles on the posterior edge of the scales, locality Otovice "Chmelnice", NM-M 4916, scale bar 5 mm; d: isolated scale, from anterior area of the lateral side of the body, with denticulated posterior edge, locality Otovice "Chmelnice", P 30945, scale bar 2 mm; e: isolated scale from the pelvic area of the body, locality Otovice "Chmelnice", P 30945, scale bar 2 mm; f, g: drawing and photograph of the postcleithrum and the scales behind the pectoral girdle (the scales bear conspicuous ridges on their outer surface; well preserved large postcleithrum is without ridges.), locality Otovice "Chmelnice", NM-M 4915, scale bars 5 mm. Abbreviations: Cl – cleithrum, Pcl – postcleithrum, Scl – supracleithrum. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)

Text-fig. 12. Paramblypterus cf. rohani. Arrows indicate directio cranialis. a, b: photograph and drawing of four ridge scales in front of the dorsal fin base, locality Otovice "Chmelnice", P 80178, scale bars 5 mm; c: scale rows from the area between the pectoral and pelvic fins, outer surfaces of the scales bear fine ridges terminating as denticles on the posterior edge of the scales, locality Otovice "Chmelnice", NM-M 4916, scale bar 5 mm; d: isolated scale, from anterior area of the lateral side of the body, with denticulated posterior edge, locality Otovice "Chmelnice", P 30945, scale bar 2 mm; e: isolated scale from the pelvic area of the body, locality Otovice "Chmelnice", P 30945, scale bar 2 mm; f, g: drawing and photograph of the postcleithrum and the scales behind the pectoral girdle (the scales bear conspicuous ridges on their outer surface; well preserved large postcleithrum is without ridges.), locality Otovice "Chmelnice", NM-M 4915, scale bars 5 mm. Abbreviations: Cl – cleithrum, Pcl – postcleithrum, Scl – supracleithrum.

Text-fig. 6. Paramblypterus vratislaviensis (AGASSIZ, 1833). a: restoration of the body in lateral view, scale bar 10 mm; b: restoration of the skull in lateral view (bones that are not clearly retained on the skull are marked with dashed lines), scale bar 10 mm; c: restoration of the skull in dorsal view, scale bar 10 mm. Abbreviations: Cl – cleithrum, Dhy – dermohyal, Dpt – dermopterotic, Dsph – dermosphenotic, Ext – extrascapular, Fr – frontal, Gul – lateral gular, Ios – infraorbital superior, Ju – jugal, La – lacrymal, Md – mandible, Mx – maxilla, Na – nasal, Op – operculum, Orb – orbit, Pa – parietal, Pmx – premaxilla, Pop – preoperculum, Pt – posttemporal, Ptr – postrostral, Rbr- branchiostegal rays, Scl – supracleithrum, Soant – supraorbital anterior, Sop – suboperculum, Spi – spiracular, sr – sclerotic ring. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)

Text-fig. 6. Paramblypterus vratislaviensis (AGASSIZ, 1833). a: restoration of the body in lateral view, scale bar 10 mm; b: restoration of the skull in lateral view (bones that are not clearly retained on the skull are marked with dashed lines), scale bar 10 mm; c: restoration of the skull in dorsal view, scale bar 10 mm. Abbreviations: Cl – cleithrum, Dhy – dermohyal, Dpt – dermopterotic, Dsph – dermosphenotic, Ext – extrascapular, Fr – frontal, Gul – lateral gular, Ios – infraorbital superior, Ju – jugal, La – lacrymal, Md – mandible, Mx – maxilla, Na – nasal, Op – operculum, Orb – orbit, Pa – parietal, Pmx – premaxilla, Pop – preoperculum, Pt – posttemporal, Ptr – postrostral, Rbr- branchiostegal rays, Scl – supracleithrum, Soant – supraorbital anterior, Sop – suboperculum, Spi – spiracular, sr – sclerotic ring.

Text-fig. 11. Paramblypterus cf. rohani. Arrows indicate directio cranialis. Scale bars 5 mm. a: isolated maxilla, cleithrum and supracleithrum in lateral view, locality Otovice "Chmelnice", P 64661; b: left posttemporal in dorsal view, locality Otovice "Chmelnice", P 64664; c: right operculum in lateral view, locality Otovice "Chmelnice", P 64883; d: anal fin, locality Otovice "Stěnava", DP 4529; e: dorsal fin, locality Otovice "Chmelnice", NM-M 4916. Abbreviations: Cl – cleithrum, Mx – maxilla, Scl – supracleithrum. in Actinopterygians Of The Broumov Formation (Permian) In The Czech Part Of The Intra-Sudetic Basin (The Czech Republic)

Text-fig. 11. Paramblypterus cf. rohani. Arrows indicate directio cranialis. Scale bars 5 mm. a: isolated maxilla, cleithrum and supracleithrum in lateral view, locality Otovice "Chmelnice", P 64661; b: left posttemporal in dorsal view, locality Otovice "Chmelnice", P 64664; c: right operculum in lateral view, locality Otovice "Chmelnice", P 64883; d: anal fin, locality Otovice "Stěnava", DP 4529; e: dorsal fin, locality Otovice "Chmelnice", NM-M 4916. Abbreviations: Cl – cleithrum, Mx – maxilla, Scl – supracleithrum.

opencc-by-4.0Nov 2017View details →

CheckMyBlob evaluation data set (CL)

A data set of ligands used to evaluate the CheckMyBlob method, described in the Kowiel et al. paper "Automatic recognition of ligands in electron density by machine learning methods". This data set repeats the setup used in the study of Carolan & Lamzin titled "Automated identification of crystallographic ligands using sparse-density representations". It consists of ligands from X-ray diffraction experiments with 1.0–2.5 Å resolution. Adjacent PDB ligands were not connected. Ligands were labeled according to the PDB naming convention. The data set was limited to the 82 ligand types listed by Carolan & Lamzin. The resulting data set consists of 121,360 examples with ligand counts ranging from 42,622 examples for SO4 to 16 for SPO (spheroidene). For machine learning (classification) purposes, the target attribute is: res_name.

opencc-by-4.0Dec 2022View details →

Рис. 4. Фотографии Mongolotheristus tsalolichini sp. nov., гоΛотип самца (a, b, d, f, g, h, k) и паратип самца (с, e, i): a — общий виΑ; b, с — гоΛова; d — переΑний конец теΛа; e — теΛо в обΛасти прекΛоакаΛьных суппΛементов; f — прекΛоакаΛьный отΑеΛ теΛа; g — теΛо в обΛасти кΛоаки; h, i — хвост, k — терминус хвоста. Обозначения: cl — кΛоака; c.p. — хвостовые папиΛΛы; f.a. — фовея амфиΑ; gub — руΛек; ols — внешние губные щетинки; ph — фаринкс; phst — фарингостома; spic — спикуΛа; sup — суппΛементы; t — хвост; t.s. — терминаΛьная щетинка. Масштаб: a — 50 мкм; d — 20 мкм; с, f, h, i — 10 мкм; b, e, g, k — 5 мкм Fig. 4. Light micrographs of Mongolotheristus tsalolichini sp. nov., male holotype (a, b, d, f, g, h, k) and male paratype (c, e, i): a — general view; b, с — head; d — anterior body end; e — body in the region of precloacal supplements; f — precloacal region of the body; g — cloaca region; h, i — tail, k — tail terminus. Abbreviations: cl — cloaca; c.p. — caudal papillae, f.a. — fovea of amphid; gub — gubernaculum; ols — outer labial setae; ph — pharynx; phst — pharyngostoma; spic — spicula; sup — supplements; t — tail; t.s. — terminal setae. Scale bars: a — 50 µm; d — 20 µm; с, f, h, i — 10 µm; b, e, g, k — 5 µm in Geomonhystera longisoma sp. nov. and Mongolotheristus tsalolichini sp. nov. (Nematoda, Monhysterida) from Mekong River mouth, Vietnam

Рис. 4. Фотографии Mongolotheristus tsalolichini sp. nov., гоΛотип самца (a, b, d, f, g, h, k) и паратип самца (с, e, i): a — общий виΑ; b, с — гоΛова; d — переΑний конец теΛа; e — теΛо в обΛасти прекΛоакаΛьных суппΛементов; f — прекΛоакаΛьный отΑеΛ теΛа; g — теΛо в обΛасти кΛоаки; h, i — хвост, k — терминус хвоста. Обозначения: cl — кΛоака; c.p. — хвостовые папиΛΛы; f.a. — фовея амфиΑ; gub — руΛек; ols — внешние губные щетинки; ph — фаринкс; phst — фарингостома; spic — спикуΛа; sup — суппΛементы; t — хвост; t.s. — терминаΛьная щетинка. Масштаб: a — 50 мкм; d — 20 мкм; с, f, h, i — 10 мкм; b, e, g, k — 5 мкм Fig. 4. Light micrographs of Mongolotheristus tsalolichini sp. nov., male holotype (a, b, d, f, g, h, k) and male paratype (c, e, i): a — general view; b, с — head; d — anterior body end; e — body in the region of precloacal supplements; f — precloacal region of the body; g — cloaca region; h, i — tail, k — tail terminus. Abbreviations: cl — cloaca; c.p. — caudal papillae, f.a. — fovea of amphid; gub — gubernaculum; ols — outer labial setae; ph — pharynx; phst — pharyngostoma; spic — spicula; sup — supplements; t — tail; t.s. — terminal setae. Scale bars: a — 50 µm; d — 20 µm; с, f, h, i — 10 µm; b, e, g, k — 5 µm

opencc-by-4.0Dec 2022View details →

Рис. 2. Фотографии Geomonhystera longisoma sp. nov., гоΛотип самца (a, c, d, g, h) и паратип самки (b, e, f, i): a, b — общий виΑ; с — переΑний конец теΛа; d, e — гоΛова; f — теΛо в обΛасти вуΛьвы и ануса; g — теΛо в обΛасти кΛоаки; h, i — хвост. Обозначения: an — анус; c.g. — карΑиаΛьные жеΛезы; cl — кΛоака; eg — яйцо; f.a. — фовея амфиΑ; gub — руΛек; in — среΑняя кишка; ols — внешние губные щетинки; ph — фаринкс; spic — спикуΛа; t — хвост. Масштаб: a, b — 100 мкм; с, f, i — 50 мкм; h — 20 мкм; d, e, g — 10 мкм Fig. 2. Light micrographs of Geomonhystera longisoma sp. nov., male holotype (a, c, d, g, h) and female paratype (b, e, f, i): a, b — general view; с — anterior body end; d, e — head; f — vulva and anus region; g — cloaca region; h, i — tail. Abbreviations: an — anus; c.g. — cardial glands; cl — cloaca; eg — egg; f.a. — fovea of amphid; gub — gubernaculum, ols — outer labial setae; in — intestine; ph — pharynx; spic — spicula; t — tail. Scale bars: a, b — 100 µm; с, f, i — 50 µm; h — 20 µm; d, e, g — 10 µm in Geomonhystera longisoma sp. nov. and Mongolotheristus tsalolichini sp. nov. (Nematoda, Monhysterida) from Mekong River mouth, Vietnam

Рис. 2. Фотографии Geomonhystera longisoma sp. nov., гоΛотип самца (a, c, d, g, h) и паратип самки (b, e, f, i): a, b — общий виΑ; с — переΑний конец теΛа; d, e — гоΛова; f — теΛо в обΛасти вуΛьвы и ануса; g — теΛо в обΛасти кΛоаки; h, i — хвост. Обозначения: an — анус; c.g. — карΑиаΛьные жеΛезы; cl — кΛоака; eg — яйцо; f.a. — фовея амфиΑ; gub — руΛек; in — среΑняя кишка; ols — внешние губные щетинки; ph — фаринкс; spic — спикуΛа; t — хвост. Масштаб: a, b — 100 мкм; с, f, i — 50 мкм; h — 20 мкм; d, e, g — 10 мкм Fig. 2. Light micrographs of Geomonhystera longisoma sp. nov., male holotype (a, c, d, g, h) and female paratype (b, e, f, i): a, b — general view; с — anterior body end; d, e — head; f — vulva and anus region; g — cloaca region; h, i — tail. Abbreviations: an — anus; c.g. — cardial glands; cl — cloaca; eg — egg; f.a. — fovea of amphid; gub — gubernaculum, ols — outer labial setae; in — intestine; ph — pharynx; spic — spicula; t — tail. Scale bars: a, b — 100 µm; с, f, i — 50 µm; h — 20 µm; d, e, g — 10 µm