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12 results for “Coccomyxa”
Fastqc reports of sequencing data from Coccomyxa elongata SAG 216-3b
<p>Here we provide access to the fastqc files of the corresponding PacBio Hifi, ONT, Hi-C and RNAseq data that were used to generate a high-quality chromosome-scale genome assembly and annotation for the freshwater alga <em>Coccomyxa elongata </em>SAG 216-3b.</p>
Figure 3 from: Cao S, Zhang F, Zheng H, Liu C, Peng F, Zhou Q (2018) Coccomyxa antarctica sp. nov. from the Antarctic lichen Usnea aurantiacoatra. PhytoKeys 98: 107-115. https://doi.org/10.3897/phytokeys.98.25360
Figure 3 The NJ tree based on ITS rDNA (a) and SSU rDNA (b) sequences phylogenetic analyses. The sequences obtained by the authors were exhibited in bold font. The clades referred to Malavasi et al. (2016).
Figure 2 from: Cao S, Zhang F, Zheng H, Liu C, Peng F, Zhou Q (2018) Coccomyxa antarctica sp. nov. from the Antarctic lichen Usnea aurantiacoatra. PhytoKeys 98: 107-115. https://doi.org/10.3897/phytokeys.98.25360
Figure 2 Ultrastructure of Coccomyxa antarctica Shunan Cao & Qiming Zhou, sp. nov. a–c cultured in BBM medium; d-f cultured in PDA medium. a, b mature autosporangium c, d Cup-shaped chloroplast e, f vegetative cell. Key: Ch: chloroplast; Cw: cell wall; Mit: mitochondria; N: nucleus; S: starch granules; Th: thylakoids. Scale bars: 0.5 μm(a, d); 0.2 μm (b, c, e, f).
Figure 1 from: Cao S, Zhang F, Zheng H, Liu C, Peng F, Zhou Q (2018) Coccomyxa antarctica sp. nov. from the Antarctic lichen Usnea aurantiacoatra. PhytoKeys 98: 107-115. https://doi.org/10.3897/phytokeys.98.25360
Figure 1 Morphology of Coccomyxa antarctica Shunan Cao & Qiming Zhou, sp. nov. a–d cultured in BBM medium; e-f cultured in PDA medium. Scale bars: 10 μm.
Supplementary material 3 from: Cao S, Zhang F, Zheng H, Peng F, Liu C, Zhou Q (2018) Coccomyxa greatwallensis sp. nov. (Trebouxiophyceae, Chlorophyta), a lichen epiphytic alga from Fildes Peninsula, Antarctica. PhytoKeys 110: 39-50. https://doi.org/10.3897/phytokeys.110.26961
Table S3. Comparison of the closely related species :
Supplementary material 1 from: Cao S, Zhang F, Zheng H, Peng F, Liu C, Zhou Q (2018) Coccomyxa greatwallensis sp. nov. (Trebouxiophyceae, Chlorophyta), a lichen epiphytic alga from Fildes Peninsula, Antarctica. PhytoKeys 110: 39-50. https://doi.org/10.3897/phytokeys.110.26961
Table S1. Pairwise distance calculated using ITS rDNA sequences :
Supplementary material 2 from: Cao S, Zhang F, Zheng H, Peng F, Liu C, Zhou Q (2018) Coccomyxa greatwallensis sp. nov. (Trebouxiophyceae, Chlorophyta), a lichen epiphytic alga from Fildes Peninsula, Antarctica. PhytoKeys 110: 39-50. https://doi.org/10.3897/phytokeys.110.26961
Table S2. Pairwise distance calculated using SSU rDNA sequences :
Figure 3 from: Cao S, Zhang F, Zheng H, Peng F, Liu C, Zhou Q (2018) Coccomyxa greatwallensis sp. nov. (Trebouxiophyceae, Chlorophyta), a lichen epiphytic alga from Fildes Peninsula, Antarctica. PhytoKeys 110: 39-50. https://doi.org/10.3897/phytokeys.110.26961
Figure 3 The NJ tree based on ITS rDNA (a) and the ML tree based on SSU rDNA (b) sequences phylogenetic analyses. The sequences marked with Coccomyxa clade A–N referred after Malavasi et al. (2016).
Figure 2 from: Cao S, Zhang F, Zheng H, Peng F, Liu C, Zhou Q (2018) Coccomyxa greatwallensis sp. nov. (Trebouxiophyceae, Chlorophyta), a lichen epiphytic alga from Fildes Peninsula, Antarctica. PhytoKeys 110: 39-50. https://doi.org/10.3897/phytokeys.110.26961
Figure 2 Ultrastructure of Coccomyxagreatwallensis Shunan Cao & Qiming Zhou, sp. nov. in PDA medium; note: chloroplast (2), plastoglobuli (2), cell wall (3), starch granules (4), thylankoids (5) and mitochondria (6). Scale bar: 0.2 µm.
Figure 1 from: Cao S, Zhang F, Zheng H, Peng F, Liu C, Zhou Q (2018) Coccomyxa greatwallensis sp. nov. (Trebouxiophyceae, Chlorophyta), a lichen epiphytic alga from Fildes Peninsula, Antarctica. PhytoKeys 110: 39-50. https://doi.org/10.3897/phytokeys.110.26961
Figure 1 Coccomyxagreatwallensis Shunan Cao & Qiming Zhou, sp. nov., light microphotographs. Cells cultured in BBM medium (a, b) and in PDA medium (c, d). Scale bar: 10 µm.
Transcriptome analysis reveals global regulation in response to CO2 supplementation in oleaginous microalga Coccomyxa subellipsoidea C-169
GEO Series GSE76638. Coccomyxa subellipsoidea C-169. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome wide RNA-Seq of CsubMADS1 OX and wildtype Coccomyxa subellipsoidea C-169 cultures
GEO Series GSE214369. Coccomyxa subellipsoidea C-169. 6 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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